C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for Y54H5A.1

Gene ID Gene Name Reads Transcripts Annotation
Y54H5A.1 Y54H5A.1 12787 Y54H5A.1.1, Y54H5A.1.2, Y54H5A.1.3

Genes with expression patterns similar to Y54H5A.1

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. Y54H5A.1 Y54H5A.1 12787 4 - 1.000 - 1.000 1.000 1.000 - -
2. C16A3.3 let-716 8448 3.844 - 0.977 - 0.977 0.926 0.964 - -
3. T23F6.4 rbd-1 5825 3.835 - 0.982 - 0.982 0.927 0.944 - - RBD (RNA binding domain) protein [Source:RefSeq peptide;Acc:NP_502432]
4. F10G7.1 tag-151 9031 3.828 - 0.984 - 0.984 0.887 0.973 - - Pre-rRNA-processing protein TSR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q19329]
5. ZK1128.6 ttll-4 6059 3.826 - 0.974 - 0.974 0.908 0.970 - - Tubulin polyglutamylase ttll-4 [Source:UniProtKB/Swiss-Prot;Acc:Q09647]
6. Y71G12B.9 lin-65 7476 3.824 - 0.970 - 0.970 0.907 0.977 - - LIN-65L; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q95XN0]
7. B0035.12 sart-3 7188 3.82 - 0.976 - 0.976 0.921 0.947 - - human SART-3/p110 homolog [Source:RefSeq peptide;Acc:NP_502136]
8. F01F1.7 ddx-23 4217 3.819 - 0.972 - 0.972 0.903 0.972 - - DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_498260]
9. Y38E10A.6 ceh-100 5505 3.815 - 0.958 - 0.958 0.921 0.978 - - C. Elegans Homeobox [Source:RefSeq peptide;Acc:NP_001022428]
10. C25A1.10 dao-5 18351 3.814 - 0.966 - 0.966 0.915 0.967 - - Dauer or Aging adult Overexpression [Source:RefSeq peptide;Acc:NP_001021004]
11. H20J04.8 mog-2 3084 3.813 - 0.968 - 0.968 0.929 0.948 - - Probable U2 small nuclear ribonucleoprotein A' [Source:UniProtKB/Swiss-Prot;Acc:Q9BLB6]
12. Y14H12B.2 Y14H12B.2 6496 3.813 - 0.969 - 0.969 0.942 0.933 - -
13. C02F5.4 cids-1 3125 3.812 - 0.942 - 0.942 0.965 0.963 - - CID domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P34281]
14. T20B12.1 trd-1 2860 3.811 - 0.981 - 0.981 0.931 0.918 - - Tetratricopeptide repeat-containing protein trd-1 [Source:UniProtKB/Swiss-Prot;Acc:P41842]
15. Y39E4B.2 snpc-1.2 5800 3.809 - 0.960 - 0.960 0.948 0.941 - - SNAPc (Small Nuclear RNA Activating Complex) homolog [Source:RefSeq peptide;Acc:NP_499719]
16. C14A4.4 crn-3 6558 3.808 - 0.982 - 0.982 0.877 0.967 - - Cell-death-Related Nuclease [Source:RefSeq peptide;Acc:NP_871964]
17. Y23H5B.6 Y23H5B.6 5886 3.808 - 0.982 - 0.982 0.879 0.965 - -
18. T03D8.2 mrps-12 8253 3.807 - 0.964 - 0.964 0.904 0.975 - - Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_508023]
19. C41C4.6 ulp-4 13338 3.806 - 0.961 - 0.961 0.922 0.962 - - Ubiquitin-like protease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09275]
20. C15H11.9 rrbs-1 9177 3.805 - 0.971 - 0.971 0.909 0.954 - - Ribosome biogenesis regulatory protein homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9XVT0]
21. T28D9.2 rsp-5 6460 3.801 - 0.971 - 0.971 0.903 0.956 - - Probable splicing factor, arginine/serine-rich 5 [Source:UniProtKB/Swiss-Prot;Acc:Q10021]
22. F09F7.3 rpc-2 9751 3.798 - 0.960 - 0.960 0.910 0.968 - - DNA-directed RNA polymerase [Source:RefSeq peptide;Acc:NP_498192]
23. B0041.4 rpl-4 161951 3.796 - 0.929 - 0.929 0.961 0.977 - - 60S ribosomal protein L4 [Source:UniProtKB/Swiss-Prot;Acc:O02056]
24. Y116A8C.42 snr-1 17062 3.796 - 0.972 - 0.972 0.882 0.970 - - Small nuclear ribonucleoprotein Sm D3 [Source:UniProtKB/Swiss-Prot;Acc:Q17348]
25. K09H9.6 lpd-6 5459 3.795 - 0.950 - 0.950 0.931 0.964 - - LiPid Depleted [Source:RefSeq peptide;Acc:NP_491108]
26. C34E10.11 mrps-26 4649 3.795 - 0.965 - 0.965 0.902 0.963 - - Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_498113]
27. ZK381.1 him-3 4913 3.795 - 0.972 - 0.972 0.899 0.952 - - High Incidence of Males (increased X chromosome loss) [Source:RefSeq peptide;Acc:NP_501078]
28. F41G3.14 exos-8 2300 3.794 - 0.972 - 0.972 0.883 0.967 - - EXOSome (multiexonuclease complex) component [Source:RefSeq peptide;Acc:NP_495376]
29. R05D3.11 met-2 3364 3.794 - 0.958 - 0.958 0.916 0.962 - - Histone-lysine N-methyltransferase met-2 [Source:UniProtKB/Swiss-Prot;Acc:P34544]
30. D2096.8 nap-1 59459 3.794 - 0.975 - 0.975 0.880 0.964 - - Nucleosome Assembly Protein [Source:RefSeq peptide;Acc:NP_501422]
31. F55A12.8 nath-10 4253 3.791 - 0.971 - 0.971 0.893 0.956 - - N-acetyltransferase 10 homolog [Source:UniProtKB/Swiss-Prot;Acc:O01757]
32. C26E6.4 rpb-2 7053 3.79 - 0.982 - 0.982 0.838 0.988 - - DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578]
33. T02G5.9 kars-1 9763 3.789 - 0.974 - 0.974 0.858 0.983 - - Lysine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:Q22099]
34. Y17G7A.1 hmg-12 29989 3.787 - 0.973 - 0.973 0.867 0.974 - - HMG [Source:RefSeq peptide;Acc:NP_496544]
35. B0464.2 ctr-9 7610 3.787 - 0.949 - 0.949 0.913 0.976 - - RNA polymerase-associated protein CTR9 [Source:UniProtKB/Swiss-Prot;Acc:Q03560]
36. C07E3.2 pro-2 4193 3.786 - 0.945 - 0.945 0.930 0.966 - - Nucleolar complex protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:O17580]
37. C42D4.8 rpc-1 5000 3.786 - 0.945 - 0.945 0.955 0.941 - - DNA-directed RNA polymerase [Source:RefSeq peptide;Acc:NP_501127]
38. C09G5.2 dph-2 2159 3.786 - 0.963 - 0.963 0.940 0.920 - - Diphthamide biosynthesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q09454]
39. Y37D8A.11 cec-7 8801 3.786 - 0.967 - 0.967 0.885 0.967 - - C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_001022828]
40. Y71A12B.1 rps-6 123721 3.785 - 0.946 - 0.946 0.967 0.926 - - 40S ribosomal protein S6 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEN6]
41. Y46G5A.4 snrp-200 13827 3.784 - 0.974 - 0.974 0.858 0.978 - - Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Source:UniProtKB/Swiss-Prot;Acc:Q9U2G0]
42. Y113G7B.17 prmt-1 43709 3.784 - 0.979 - 0.979 0.885 0.941 - - PRotein arginine MethylTransferase [Source:RefSeq peptide;Acc:NP_507909]
43. B0285.4 B0285.4 3474 3.782 - 0.954 - 0.954 0.942 0.932 - - Probable leucine carboxyl methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:P46554]
44. F52F12.4 lsl-1 4055 3.781 - 0.948 - 0.948 0.932 0.953 - - LSY-2-Like [Source:RefSeq peptide;Acc:NP_492621]
45. C49H3.10 xpo-3 9101 3.781 - 0.988 - 0.988 0.837 0.968 - - eXPOrtin (nuclear export receptor) [Source:RefSeq peptide;Acc:NP_001294153]
46. F55H2.6 clu-1 21404 3.78 - 0.975 - 0.975 0.852 0.978 - - Clustered mitochondria protein homolog [Source:UniProtKB/Swiss-Prot;Acc:P34466]
47. F58B3.5 mars-1 6729 3.779 - 0.960 - 0.960 0.877 0.982 - - Methionine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q20970]
48. C34E10.5 prmt-5 12277 3.779 - 0.980 - 0.980 0.842 0.977 - - Protein arginine N-methyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:P46580]
49. C14B9.7 rpl-21 118616 3.778 - 0.947 - 0.947 0.951 0.933 - - 60S ribosomal protein L21 [Source:UniProtKB/Swiss-Prot;Acc:P34334]
50. C50F2.3 C50F2.3 3084 3.777 - 0.956 - 0.956 0.925 0.940 - -
51. Y53C12B.3 nos-3 20231 3.777 - 0.975 - 0.975 0.878 0.949 - - NanOS related [Source:RefSeq peptide;Acc:NP_496101]
52. F14B4.3 rpoa-2 7549 3.776 - 0.972 - 0.972 0.876 0.956 - - DNA-directed RNA polymerase [Source:RefSeq peptide;Acc:NP_492476]
53. C06A1.5 rpb-6 7515 3.776 - 0.972 - 0.972 0.859 0.973 - - Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Source:UniProtKB/Swiss-Prot;Acc:Q17684]
54. F56D2.6 ddx-15 12282 3.775 - 0.968 - 0.968 0.856 0.983 - - Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Source:UniProtKB/Swiss-Prot;Acc:Q20875]
55. F55F8.3 F55F8.3 2107 3.774 - 0.950 - 0.950 0.930 0.944 - - Periodic tryptophan protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:P91341]
56. C01F6.8 icln-1 6586 3.774 - 0.954 - 0.954 0.896 0.970 - - ICLN (ICLn) ion channel homolog [Source:RefSeq peptide;Acc:NP_001021288]
57. Y48A6B.5 exos-1 1552 3.773 - 0.950 - 0.950 0.919 0.954 - - EXOSome (multiexonuclease complex) component [Source:RefSeq peptide;Acc:NP_499416]
58. R13A5.12 lpd-7 10476 3.773 - 0.972 - 0.972 0.860 0.969 - - Pescadillo homolog [Source:UniProtKB/Swiss-Prot;Acc:Q95Y89]
59. ZK1251.9 dcaf-1 10926 3.772 - 0.963 - 0.963 0.887 0.959 - - DDB1- and CUL4-associated factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q21106]
60. Y45G5AM.8 coh-4 2525 3.771 - 0.961 - 0.961 0.913 0.936 - - COHesin family [Source:RefSeq peptide;Acc:NP_504161]
61. T19A6.2 ngp-1 5884 3.77 - 0.977 - 0.977 0.846 0.970 - - Nuclear/nucleolar GTP-binding Protein family [Source:RefSeq peptide;Acc:NP_492275]
62. H06I04.3 H06I04.3 14642 3.769 - 0.977 - 0.977 0.901 0.914 - - Putative rRNA methyltransferase [Source:RefSeq peptide;Acc:NP_497655]
63. C06G3.2 klp-18 4885 3.768 - 0.964 - 0.964 0.877 0.963 - - Kinesin-like protein [Source:RefSeq peptide;Acc:NP_501093]
64. F23F1.1 nfyc-1 9983 3.767 - 0.963 - 0.963 0.865 0.976 - - Nuclear transcription Factor Y, C (gamma) subunit [Source:RefSeq peptide;Acc:NP_493645]
65. C27H6.3 tofu-1 2992 3.767 - 0.959 - 0.959 0.898 0.951 - - Twenty One u-rna (21U-RNA) biogenesis Fouled Up [Source:RefSeq peptide;Acc:NP_505568]
66. Y105E8B.3 riok-2 5531 3.767 - 0.964 - 0.964 0.876 0.963 - - Serine/threonine-protein kinase RIO2 [Source:UniProtKB/Swiss-Prot;Acc:Q95Q34]
67. R144.7 larp-1 24669 3.767 - 0.973 - 0.973 0.853 0.968 - - La-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:D5MCN2]
68. C04G2.6 dis-3 5048 3.767 - 0.972 - 0.972 0.853 0.970 - - Probable exosome complex exonuclease RRP44 [Source:UniProtKB/Swiss-Prot;Acc:Q17632]
69. T23G11.3 gld-1 41748 3.766 - 0.965 - 0.965 0.924 0.912 - - Female germline-specific tumor suppressor gld-1 [Source:UniProtKB/Swiss-Prot;Acc:Q17339]
70. F53A2.4 nud-1 7818 3.766 - 0.953 - 0.953 0.920 0.940 - - Aspergillus NUclear Division related [Source:RefSeq peptide;Acc:NP_499749]
71. B0511.6 B0511.6 6673 3.765 - 0.986 - 0.986 0.870 0.923 - -
72. ZK856.9 zhit-3 2552 3.763 - 0.960 - 0.960 0.891 0.952 - - Zinc finger, HIT-type [Source:RefSeq peptide;Acc:NP_505627]
73. T23H2.1 npp-12 12425 3.763 - 0.961 - 0.961 0.865 0.976 - - Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491855]
74. Y55F3AM.12 dcap-1 8679 3.763 - 0.946 - 0.946 0.902 0.969 - - mRNA DeCAPping enzyme [Source:RefSeq peptide;Acc:NP_500030]
75. H27M09.2 rpb-5 4744 3.761 - 0.952 - 0.952 0.921 0.936 - - DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9N5K2]
76. F18C5.3 tag-184 4027 3.761 - 0.974 - 0.974 0.864 0.949 - -
77. W08D2.7 mtr-4 2699 3.76 - 0.979 - 0.979 0.829 0.973 - - mRNA transport homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q23223]
78. W07E6.1 nol-1 7892 3.76 - 0.947 - 0.947 0.904 0.962 - - NucleOLar protein [Source:RefSeq peptide;Acc:NP_493742]
79. F41H10.10 htp-1 6425 3.76 - 0.974 - 0.974 0.943 0.869 - - Him-Three Paralog [Source:RefSeq peptide;Acc:NP_500799]
80. ZK856.13 tftc-3 2960 3.758 - 0.947 - 0.947 0.895 0.969 - - Transcription Factor ThreeC subunit (GTF3C homolog) [Source:RefSeq peptide;Acc:NP_505626]
81. C04H5.6 mog-4 4517 3.758 - 0.951 - 0.951 0.894 0.962 - - Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 [Source:UniProtKB/Swiss-Prot;Acc:O45244]
82. M88.7 cisd-3.1 5713 3.758 - 0.964 - 0.964 0.869 0.961 - - CDGSH Iron Sulfur Domain protein homolog [Source:RefSeq peptide;Acc:NP_497920]
83. ZK524.3 lars-2 1894 3.757 - 0.962 - 0.962 0.879 0.954 - - Leucyl Amino-acyl tRNA Synthetase [Source:RefSeq peptide;Acc:NP_001021875]
84. Y92H12BR.6 set-29 2455 3.757 - 0.952 - 0.952 0.936 0.917 - - SET (trithorax/polycomb) domain containing [Source:RefSeq peptide;Acc:NP_490849]
85. F18E2.2 abcf-1 4708 3.757 - 0.966 - 0.966 0.853 0.972 - - ABC transporter, class F [Source:RefSeq peptide;Acc:NP_506192]
86. ZK945.3 puf-12 6266 3.756 - 0.956 - 0.956 0.886 0.958 - - Pumilio domain-containing protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q09622]
87. F45E12.2 brf-1 4667 3.755 - 0.946 - 0.946 0.898 0.965 - - BRF (transcription factor) homolog [Source:RefSeq peptide;Acc:NP_495526]
88. K08F4.2 gtbp-1 25222 3.755 - 0.977 - 0.977 0.833 0.968 - - ras-Gtpase-activating protein SH3 (Three) domain-Binding Protein [Source:RefSeq peptide;Acc:NP_501842]
89. Y47D3A.26 smc-3 6256 3.755 - 0.959 - 0.959 0.897 0.940 - - Structural maintenance of chromosomes protein 3 [Source:UniProtKB/Swiss-Prot;Acc:B2FDA8]
90. F42A10.1 abcf-3 5557 3.753 - 0.960 - 0.960 0.867 0.966 - - ABC transporter, class F [Source:RefSeq peptide;Acc:NP_498339]
91. F58A4.9 rpac-19 2692 3.751 - 0.941 - 0.941 0.915 0.954 - - Probable DNA-directed RNA polymerases I and III subunit RPAC2 [Source:UniProtKB/Swiss-Prot;Acc:P34476]
92. C27B7.5 C27B7.5 6331 3.751 - 0.971 - 0.971 0.848 0.961 - -
93. Y73B6BL.32 lsm-8 11002 3.75 - 0.985 - 0.985 0.862 0.918 - - LSM Sm-like protein [Source:RefSeq peptide;Acc:NP_500964]
94. T13H5.5 mrps-18B 3430 3.75 - 0.957 - 0.957 0.868 0.968 - - Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_495800]
95. K01C8.9 nst-1 4587 3.75 - 0.955 - 0.955 0.876 0.964 - - Guanine nucleotide-binding protein-like 3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q21086]
96. W06E11.4 sbds-1 6701 3.749 - 0.961 - 0.961 0.871 0.956 - - Ribosome maturation protein SBDS [Source:UniProtKB/Swiss-Prot;Acc:Q23202]
97. Y48B6A.3 xrn-2 4881 3.749 - 0.943 - 0.943 0.913 0.950 - - 5'-3' exoribonuclease 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9U299]
98. F28C6.6 suf-1 3642 3.748 - 0.957 - 0.957 0.863 0.971 - - SUppressor-of-Forked (Drosophila) homolog [Source:RefSeq peptide;Acc:NP_495825]
99. Y111B2A.2 Y111B2A.2 21569 3.748 - 0.974 - 0.974 0.835 0.965 - -
100. Y111B2A.17 elpc-2 3504 3.747 - 0.953 - 0.953 0.930 0.911 - - ELongator complex Protein Component [Source:RefSeq peptide;Acc:NP_499648]

There are 1170 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA