C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for F28C6.6

Gene ID Gene Name Reads Transcripts Annotation
F28C6.6 suf-1 3642 F28C6.6.1, F28C6.6.2 SUppressor-of-Forked (Drosophila) homolog [Source:RefSeq peptide;Acc:NP_495825]

Genes with expression patterns similar to F28C6.6

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. F28C6.6 suf-1 3642 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SUppressor-of-Forked (Drosophila) homolog [Source:RefSeq peptide;Acc:NP_495825]
2. T23H2.1 npp-12 12425 7.735 0.962 0.964 0.950 0.964 0.990 0.979 0.965 0.961 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491855]
3. Y17G7A.1 hmg-12 29989 7.722 0.943 0.980 0.946 0.980 0.988 0.977 0.974 0.934 HMG [Source:RefSeq peptide;Acc:NP_496544]
4. B0035.3 B0035.3 4118 7.714 0.948 0.970 0.940 0.970 0.986 0.975 0.966 0.959
5. F28B3.7 him-1 18274 7.707 0.975 0.983 0.967 0.983 0.952 0.985 0.966 0.896 Structural maintenance of chromosomes protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O01789]
6. C02B10.5 C02B10.5 9171 7.705 0.934 0.963 0.955 0.963 0.983 0.985 0.983 0.939
7. F52C9.7 mog-3 9880 7.704 0.944 0.945 0.963 0.945 0.983 0.967 0.982 0.975 Masculinisation Of Germline [Source:RefSeq peptide;Acc:NP_498134]
8. F56D2.6 ddx-15 12282 7.697 0.938 0.965 0.948 0.965 0.990 0.977 0.974 0.940 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Source:UniProtKB/Swiss-Prot;Acc:Q20875]
9. Y65B4BL.2 deps-1 18277 7.694 0.953 0.976 0.951 0.976 0.973 0.972 0.980 0.913
10. T26A5.5 jhdm-1 12698 7.693 0.943 0.964 0.968 0.964 0.982 0.972 0.950 0.950 JmjC domain-containing histone demethylation protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q95Q98]
11. D2030.6 prg-1 26751 7.692 0.938 0.965 0.962 0.965 0.968 0.985 0.960 0.949 Piwi-like protein [Source:RefSeq peptide;Acc:NP_492121]
12. ZK381.1 him-3 4913 7.69 0.938 0.976 0.941 0.976 0.988 0.962 0.961 0.948 High Incidence of Males (increased X chromosome loss) [Source:RefSeq peptide;Acc:NP_501078]
13. Y37E3.15 npp-13 7250 7.69 0.935 0.977 0.984 0.977 0.986 0.955 0.953 0.923 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_001293351]
14. C27B7.1 spr-2 14958 7.688 0.932 0.972 0.953 0.972 0.978 0.963 0.973 0.945 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
15. F22D6.3 nars-1 18624 7.687 0.925 0.974 0.965 0.974 0.970 0.984 0.967 0.928 Asparagine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q19722]
16. F32H2.4 thoc-3 3861 7.684 0.953 0.951 0.961 0.951 0.967 0.976 0.972 0.953 THO Complex (transcription factor/nuclear export) subunit [Source:RefSeq peptide;Acc:NP_492416]
17. C05C8.6 hpo-9 8263 7.681 0.971 0.963 0.937 0.963 0.982 0.965 0.963 0.937
18. F23F1.1 nfyc-1 9983 7.681 0.948 0.953 0.969 0.953 0.971 0.997 0.966 0.924 Nuclear transcription Factor Y, C (gamma) subunit [Source:RefSeq peptide;Acc:NP_493645]
19. C25D7.8 otub-1 7941 7.68 0.923 0.964 0.969 0.964 0.984 0.955 0.955 0.966 Ubiquitin thioesterase otubain-like [Source:UniProtKB/Swiss-Prot;Acc:Q9XVR6]
20. Y38A8.3 ulp-2 7403 7.673 0.954 0.950 0.966 0.950 0.985 0.975 0.959 0.934 Ubiquitin-Like Protease [Source:RefSeq peptide;Acc:NP_494914]
21. F55G1.8 plk-3 12036 7.671 0.956 0.974 0.962 0.974 0.980 0.965 0.925 0.935 Serine/threonine-protein kinase plk-3 [Source:UniProtKB/Swiss-Prot;Acc:Q20845]
22. D1081.8 cdc-5L 8553 7.67 0.925 0.974 0.955 0.974 0.973 0.971 0.963 0.935 Cell Division Cycle related [Source:RefSeq peptide;Acc:NP_492303]
23. ZK328.2 eftu-2 7040 7.668 0.944 0.975 0.938 0.975 0.970 0.967 0.975 0.924 Elongation Factor TU family [Source:RefSeq peptide;Acc:NP_498308]
24. T04A8.14 emb-5 11746 7.666 0.956 0.960 0.959 0.960 0.966 0.967 0.960 0.938 Suppressor of Ty 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34703]
25. F32H2.1 snpc-4 7581 7.665 0.938 0.953 0.951 0.953 0.989 0.980 0.955 0.946 snRNA-activating protein complex subunit 4 homolog [Source:UniProtKB/Swiss-Prot;Acc:P91868]
26. Y46G5A.4 snrp-200 13827 7.663 0.933 0.960 0.954 0.960 0.973 0.978 0.975 0.930 Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Source:UniProtKB/Swiss-Prot;Acc:Q9U2G0]
27. C08B11.5 sap-49 10553 7.659 0.907 0.965 0.951 0.965 0.973 0.982 0.974 0.942 Splicing factor 3B subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09442]
28. Y54E5A.4 npp-4 6288 7.658 0.908 0.965 0.965 0.965 0.986 0.974 0.949 0.946 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_493552]
29. Y41D4B.19 npp-8 12992 7.658 0.945 0.970 0.966 0.970 0.970 0.960 0.914 0.963 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_500102]
30. B0464.2 ctr-9 7610 7.649 0.916 0.959 0.938 0.959 0.982 0.969 0.960 0.966 RNA polymerase-associated protein CTR9 [Source:UniProtKB/Swiss-Prot;Acc:Q03560]
31. C34E10.5 prmt-5 12277 7.647 0.909 0.958 0.956 0.958 0.989 0.985 0.973 0.919 Protein arginine N-methyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:P46580]
32. Y47D3A.26 smc-3 6256 7.645 0.962 0.972 0.960 0.972 0.959 0.957 0.918 0.945 Structural maintenance of chromosomes protein 3 [Source:UniProtKB/Swiss-Prot;Acc:B2FDA8]
33. Y39G10AR.7 ekl-7 7072 7.645 0.933 0.975 0.928 0.975 0.982 0.979 0.935 0.938
34. K11D12.2 pqn-51 15951 7.643 0.932 0.963 0.962 0.963 0.980 0.969 0.934 0.940 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_504355]
35. T05E8.3 let-355 8169 7.642 0.939 0.968 0.963 0.968 0.970 0.963 0.951 0.920
36. C26E6.4 rpb-2 7053 7.642 0.925 0.967 0.943 0.967 0.984 0.978 0.964 0.914 DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578]
37. R12C12.2 ran-5 14517 7.638 0.938 0.955 0.964 0.955 0.988 0.956 0.943 0.939 associated with RAN (nuclear import/export) function [Source:RefSeq peptide;Acc:NP_495208]
38. T19B4.2 npp-7 13073 7.636 0.944 0.961 0.948 0.961 0.986 0.970 0.921 0.945 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491665]
39. Y80D3A.2 emb-4 3717 7.635 0.947 0.951 0.946 0.951 0.960 0.971 0.950 0.959
40. T28D9.2 rsp-5 6460 7.635 0.956 0.961 0.943 0.961 0.965 0.970 0.951 0.928 Probable splicing factor, arginine/serine-rich 5 [Source:UniProtKB/Swiss-Prot;Acc:Q10021]
41. ZK973.2 cec-10 7108 7.631 0.948 0.952 0.907 0.952 0.994 0.971 0.939 0.968 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_491360]
42. F10E9.8 sas-4 3703 7.63 0.942 0.968 0.915 0.968 0.971 0.972 0.941 0.953 Spindle assembly abnormal protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P34402]
43. Y37A1B.1 lst-3 10739 7.629 0.929 0.964 0.957 0.964 0.966 0.935 0.949 0.965 Lateral Signaling Target [Source:RefSeq peptide;Acc:NP_001255780]
44. W02F12.6 sna-1 7338 7.629 0.935 0.963 0.941 0.963 0.977 0.965 0.955 0.930 Small Nuclear RNA (snRNA) Associated protein [Source:RefSeq peptide;Acc:NP_504701]
45. C28H8.9 dpff-1 8684 7.629 0.951 0.938 0.951 0.938 0.954 0.965 0.973 0.959 Zinc finger protein dpff-1 [Source:UniProtKB/Swiss-Prot;Acc:Q09477]
46. T10F2.4 prp-19 11298 7.627 0.918 0.956 0.972 0.956 0.971 0.956 0.967 0.931 Pre-mRNA-processing factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q10051]
47. F42A6.7 hrp-1 28201 7.627 0.920 0.964 0.969 0.964 0.974 0.973 0.966 0.897 Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q22037]
48. Y53C12B.3 nos-3 20231 7.626 0.924 0.975 0.963 0.975 0.983 0.953 0.930 0.923 NanOS related [Source:RefSeq peptide;Acc:NP_496101]
49. Y56A3A.17 npp-16 5391 7.626 0.933 0.942 0.965 0.942 0.964 0.975 0.962 0.943 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_499550]
50. K01G5.4 ran-1 32379 7.625 0.935 0.971 0.941 0.971 0.971 0.981 0.935 0.920 GTP-binding nuclear protein ran-1 [Source:UniProtKB/Swiss-Prot;Acc:O17915]
51. F29C4.6 tut-1 5637 7.625 0.873 0.967 0.941 0.967 0.981 0.968 0.956 0.972 Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O76365]
52. Y23H5B.6 Y23H5B.6 5886 7.624 0.945 0.967 0.951 0.967 0.974 0.984 0.932 0.904
53. F28H1.3 aars-2 13537 7.624 0.918 0.955 0.952 0.955 0.986 0.970 0.943 0.945 Alanine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O01541]
54. T23B5.1 prmt-3 10677 7.622 0.960 0.955 0.961 0.955 0.976 0.950 0.961 0.904 PRotein arginine MethylTransferase [Source:RefSeq peptide;Acc:NP_001040990]
55. Y116A8C.42 snr-1 17062 7.622 0.910 0.964 0.956 0.964 0.985 0.976 0.912 0.955 Small nuclear ribonucleoprotein Sm D3 [Source:UniProtKB/Swiss-Prot;Acc:Q17348]
56. F18C5.2 wrn-1 3792 7.619 0.921 0.962 0.940 0.962 0.986 0.961 0.965 0.922 Probable Werner syndrome ATP-dependent helicase homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q19546]
57. Y62E10A.11 mdt-9 5971 7.617 0.913 0.971 0.946 0.971 0.970 0.970 0.922 0.954 MeDiaTor [Source:RefSeq peptide;Acc:NP_001255737]
58. T05H10.2 apn-1 5628 7.616 0.933 0.965 0.959 0.965 0.938 0.951 0.964 0.941 DNA-(apurinic or apyrimidinic site) lyase [Source:UniProtKB/Swiss-Prot;Acc:Q10002]
59. ZK507.6 cya-1 6807 7.614 0.931 0.958 0.926 0.958 0.947 0.978 0.975 0.941 G2/mitotic-specific cyclin-A1 [Source:UniProtKB/Swiss-Prot;Acc:P34638]
60. Y18D10A.1 attf-6 6942 7.611 0.916 0.962 0.961 0.962 0.971 0.953 0.944 0.942 AT hook Transcription Factor family [Source:RefSeq peptide;Acc:NP_871800]
61. W02B12.3 rsp-1 9235 7.611 0.938 0.942 0.956 0.942 0.960 0.984 0.979 0.910 Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121]
62. C14A4.4 crn-3 6558 7.611 0.916 0.969 0.954 0.969 0.965 0.964 0.943 0.931 Cell-death-Related Nuclease [Source:RefSeq peptide;Acc:NP_871964]
63. Y34D9A.1 mrpl-38 5291 7.611 0.927 0.960 0.940 0.960 0.949 0.991 0.976 0.908 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_490808]
64. F45H11.3 hpo-35 8299 7.61 0.936 0.968 0.977 0.968 0.949 0.939 0.955 0.918
65. F56C9.6 F56C9.6 4303 7.608 0.937 0.960 0.937 0.960 0.961 0.963 0.971 0.919
66. F49D11.1 prp-17 5338 7.608 0.956 0.942 0.928 0.942 0.960 0.982 0.949 0.949 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_492851]
67. F36A2.1 cids-2 4551 7.608 0.927 0.947 0.944 0.947 0.968 0.962 0.954 0.959 pol II C-terminal Interaction Domain Suppressor [Source:RefSeq peptide;Acc:NP_492380]
68. T16G1.11 eif-3.K 14014 7.607 0.921 0.950 0.956 0.950 0.970 0.975 0.975 0.910 Eukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/Swiss-Prot;Acc:Q9XUP3]
69. K12C11.2 smo-1 12784 7.605 0.942 0.937 0.934 0.937 0.982 0.981 0.967 0.925 Small ubiquitin-related modifier [Source:UniProtKB/Swiss-Prot;Acc:P55853]
70. K08F11.5 miro-1 4512 7.605 0.961 0.966 0.925 0.966 0.939 0.957 0.961 0.930 Mitochondrial Rho GTPase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94263]
71. T05H4.14 gad-1 7979 7.604 0.944 0.940 0.944 0.940 0.983 0.967 0.965 0.921 Gastrulation defective protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O16519]
72. Y37D8A.11 cec-7 8801 7.603 0.944 0.977 0.973 0.977 0.976 0.965 0.902 0.889 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_001022828]
73. T01E8.6 mrps-14 9328 7.602 0.893 0.958 0.940 0.958 0.977 0.988 0.966 0.922 Probable 40S ribosomal protein S14, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P49391]
74. K08E3.8 mdt-29 4678 7.601 0.913 0.963 0.970 0.963 0.950 0.938 0.966 0.938 Mediator of RNA polymerase II transcription subunit 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9XUS2]
75. C14C10.4 mma-1 3306 7.6 0.928 0.963 0.925 0.963 0.940 0.975 0.973 0.933
76. ZK686.4 snu-23 9040 7.6 0.945 0.936 0.947 0.936 0.981 0.962 0.947 0.946 Putative zinc finger protein ZK686.4 [Source:RefSeq peptide;Acc:NP_498692]
77. F32E10.6 cec-5 10643 7.597 0.947 0.934 0.947 0.934 0.982 0.973 0.968 0.912 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_501232]
78. K08E7.1 eak-7 18960 7.597 0.918 0.951 0.969 0.951 0.983 0.935 0.925 0.965 Enhancer of AKt-1 null [Source:RefSeq peptide;Acc:NP_502405]
79. F58E10.3 ddx-17 15107 7.596 0.934 0.969 0.962 0.969 0.965 0.959 0.902 0.936 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_001041134]
80. R13F6.10 cra-1 11610 7.595 0.922 0.948 0.952 0.948 0.983 0.980 0.937 0.925 N-terminal acetyltransferase B complex subunit NAA25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q21986]
81. ZK1127.12 ZK1127.12 2029 7.595 0.955 0.958 0.960 0.958 0.932 0.922 0.930 0.980
82. Y71G12B.9 lin-65 7476 7.595 0.937 0.968 0.950 0.968 0.977 0.979 0.907 0.909 LIN-65L; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q95XN0]
83. C33H5.12 rsp-6 23342 7.594 0.932 0.935 0.966 0.935 0.960 0.977 0.971 0.918 Probable splicing factor, arginine/serine-rich 6 [Source:UniProtKB/Swiss-Prot;Acc:Q18409]
84. K01G5.1 rnf-113 4336 7.592 0.911 0.973 0.920 0.973 0.965 0.943 0.940 0.967 RING finger protein 113 homolog [Source:UniProtKB/Swiss-Prot;Acc:O17917]
85. F41H10.4 F41H10.4 3295 7.591 0.935 0.938 0.955 0.938 0.986 0.962 0.928 0.949
86. T11G6.1 hars-1 7908 7.591 0.900 0.970 0.946 0.970 0.971 0.972 0.919 0.943 Histidine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:P34183]
87. C25A1.4 C25A1.4 15507 7.59 0.921 0.955 0.946 0.955 0.979 0.947 0.933 0.954
88. R53.2 dtmk-1 6821 7.59 0.923 0.952 0.970 0.952 0.973 0.965 0.942 0.913 Thymidylate kinase [Source:UniProtKB/Swiss-Prot;Acc:Q22018]
89. C26D10.1 ran-3 11111 7.589 0.928 0.976 0.954 0.976 0.971 0.972 0.878 0.934 Regulator of chromosome condensation [Source:UniProtKB/Swiss-Prot;Acc:Q18211]
90. Y37H2A.5 fbxa-210 2230 7.588 0.936 0.953 0.976 0.953 0.964 0.968 0.943 0.895 F-box A protein [Source:RefSeq peptide;Acc:NP_001256783]
91. W01G7.3 rpb-11 7826 7.587 0.913 0.954 0.960 0.954 0.970 0.991 0.970 0.875 Probable DNA-directed RNA polymerase II subunit RPB11 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVH6]
92. C48B4.11 C48B4.11 4384 7.587 0.938 0.969 0.934 0.969 0.980 0.970 0.951 0.876
93. F08B4.5 pole-2 8234 7.586 0.939 0.959 0.961 0.959 0.981 0.936 0.892 0.959 Probable DNA polymerase epsilon subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q19196]
94. F58D5.1 hrp-2 17211 7.586 0.934 0.956 0.955 0.956 0.971 0.971 0.947 0.896 human HnRNP A1 homolog [Source:RefSeq peptide;Acc:NP_493049]
95. C08B11.2 hda-2 2313 7.586 0.961 0.952 0.960 0.952 0.958 0.955 0.907 0.941 Putative histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q09440]
96. C50C3.6 prp-8 19582 7.585 0.939 0.962 0.946 0.962 0.945 0.955 0.941 0.935 Pre-mRNA-splicing factor 8 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34369]
97. ZK742.1 xpo-1 20741 7.585 0.921 0.956 0.949 0.956 0.980 0.963 0.928 0.932 eXPOrtin (nuclear export receptor) [Source:RefSeq peptide;Acc:NP_741567]
98. ZK856.13 tftc-3 2960 7.585 0.908 0.960 0.943 0.960 0.962 0.956 0.969 0.927 Transcription Factor ThreeC subunit (GTF3C homolog) [Source:RefSeq peptide;Acc:NP_505626]
99. K08D10.3 rnp-3 3872 7.585 0.899 0.949 0.940 0.949 0.976 0.988 0.938 0.946 RNP (RRM RNA binding domain) containing [Source:RefSeq peptide;Acc:NP_500505]
100. F53A3.2 polh-1 2467 7.584 0.935 0.958 0.912 0.958 0.971 0.978 0.925 0.947 POLH (DNA polymerase eta) homolog [Source:RefSeq peptide;Acc:NP_497480]

There are 2305 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA