C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for T28D9.2

Gene ID Gene Name Reads Transcripts Annotation
T28D9.2 rsp-5 6460 T28D9.2a, T28D9.2b, T28D9.2c, T28D9.2d Probable splicing factor, arginine/serine-rich 5 [Source:UniProtKB/Swiss-Prot;Acc:Q10021]

Genes with expression patterns similar to T28D9.2

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. T28D9.2 rsp-5 6460 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Probable splicing factor, arginine/serine-rich 5 [Source:UniProtKB/Swiss-Prot;Acc:Q10021]
2. Y116A8C.42 snr-1 17062 7.815 0.963 0.985 0.975 0.985 0.978 0.968 0.979 0.982 Small nuclear ribonucleoprotein Sm D3 [Source:UniProtKB/Swiss-Prot;Acc:Q17348]
3. Y37D8A.11 cec-7 8801 7.808 0.968 0.974 0.981 0.974 0.981 0.979 0.983 0.968 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_001022828]
4. F23F1.1 nfyc-1 9983 7.801 0.979 0.965 0.964 0.965 0.985 0.975 0.980 0.988 Nuclear transcription Factor Y, C (gamma) subunit [Source:RefSeq peptide;Acc:NP_493645]
5. ZK381.1 him-3 4913 7.798 0.979 0.984 0.984 0.984 0.957 0.993 0.964 0.953 High Incidence of Males (increased X chromosome loss) [Source:RefSeq peptide;Acc:NP_501078]
6. Y47D3A.26 smc-3 6256 7.791 0.950 0.980 0.985 0.980 0.975 0.987 0.974 0.960 Structural maintenance of chromosomes protein 3 [Source:UniProtKB/Swiss-Prot;Acc:B2FDA8]
7. F59A2.1 npp-9 34375 7.788 0.991 0.959 0.955 0.959 0.968 0.991 0.973 0.992 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_871701]
8. Y71G12B.9 lin-65 7476 7.787 0.965 0.978 0.972 0.978 0.984 0.981 0.972 0.957 LIN-65L; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q95XN0]
9. Y53C12B.3 nos-3 20231 7.787 0.963 0.982 0.969 0.982 0.967 0.958 0.983 0.983 NanOS related [Source:RefSeq peptide;Acc:NP_496101]
10. Y17G7A.1 hmg-12 29989 7.783 0.985 0.980 0.964 0.980 0.951 0.966 0.976 0.981 HMG [Source:RefSeq peptide;Acc:NP_496544]
11. Y37D8A.9 mrg-1 14369 7.777 0.982 0.970 0.956 0.970 0.973 0.979 0.969 0.978 human MRG (Mortality factor-Related Gene) related [Source:RefSeq peptide;Acc:NP_499675]
12. C48B4.11 C48B4.11 4384 7.776 0.971 0.987 0.965 0.987 0.953 0.956 0.988 0.969
13. K01G5.4 ran-1 32379 7.775 0.976 0.979 0.963 0.979 0.950 0.956 0.987 0.985 GTP-binding nuclear protein ran-1 [Source:UniProtKB/Swiss-Prot;Acc:O17915]
14. F58E10.3 ddx-17 15107 7.77 0.985 0.982 0.983 0.982 0.957 0.959 0.948 0.974 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_001041134]
15. Y23H5B.6 Y23H5B.6 5886 7.769 0.965 0.979 0.967 0.979 0.960 0.976 0.964 0.979
16. Y14H12B.2 Y14H12B.2 6496 7.768 0.988 0.977 0.979 0.977 0.974 0.979 0.930 0.964
17. Y41D4B.19 npp-8 12992 7.766 0.971 0.976 0.980 0.976 0.967 0.977 0.986 0.933 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_500102]
18. C06A1.5 rpb-6 7515 7.759 0.976 0.971 0.953 0.971 0.989 0.970 0.992 0.937 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Source:UniProtKB/Swiss-Prot;Acc:Q17684]
19. B0414.3 hil-5 10816 7.757 0.970 0.968 0.976 0.968 0.985 0.965 0.976 0.949 Histone H1.5 [Source:UniProtKB/Swiss-Prot;Acc:O01833]
20. Y46G5A.4 snrp-200 13827 7.754 0.940 0.974 0.981 0.974 0.965 0.960 0.979 0.981 Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Source:UniProtKB/Swiss-Prot;Acc:Q9U2G0]
21. C25A1.4 C25A1.4 15507 7.749 0.968 0.982 0.965 0.982 0.979 0.978 0.975 0.920
22. F32E10.6 cec-5 10643 7.744 0.982 0.969 0.978 0.969 0.941 0.972 0.955 0.978 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_501232]
23. C34E10.2 gop-2 5684 7.744 0.985 0.968 0.974 0.968 0.976 0.975 0.952 0.946 GPN-loop GTPase 1 [Source:UniProtKB/Swiss-Prot;Acc:P46577]
24. B0035.12 sart-3 7188 7.743 0.976 0.977 0.974 0.977 0.987 0.972 0.967 0.913 human SART-3/p110 homolog [Source:RefSeq peptide;Acc:NP_502136]
25. T28D9.10 snr-3 9995 7.739 0.960 0.979 0.931 0.979 0.972 0.986 0.953 0.979 Probable small nuclear ribonucleoprotein Sm D1 [Source:UniProtKB/Swiss-Prot;Acc:Q10013]
26. C26D10.1 ran-3 11111 7.739 0.974 0.982 0.963 0.982 0.949 0.981 0.963 0.945 Regulator of chromosome condensation [Source:UniProtKB/Swiss-Prot;Acc:Q18211]
27. F32H2.1 snpc-4 7581 7.738 0.971 0.967 0.970 0.967 0.963 0.966 0.982 0.952 snRNA-activating protein complex subunit 4 homolog [Source:UniProtKB/Swiss-Prot;Acc:P91868]
28. W02B12.3 rsp-1 9235 7.738 0.980 0.964 0.984 0.964 0.940 0.973 0.955 0.978 Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121]
29. T23H2.1 npp-12 12425 7.737 0.973 0.960 0.973 0.960 0.962 0.977 0.968 0.964 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491855]
30. K02F3.11 rnp-5 6205 7.737 0.982 0.959 0.975 0.959 0.940 0.986 0.950 0.986 RNP (RRM RNA binding domain) containing [Source:RefSeq peptide;Acc:NP_497276]
31. K01G5.2 hpl-2 6781 7.737 0.974 0.983 0.975 0.983 0.970 0.972 0.896 0.984 HP1 Like (heterochromatin protein) [Source:RefSeq peptide;Acc:NP_001022653]
32. W08E3.1 snr-2 14849 7.734 0.964 0.988 0.975 0.988 0.942 0.978 0.948 0.951 Probable small nuclear ribonucleoprotein-associated protein B [Source:UniProtKB/Swiss-Prot;Acc:P91918]
33. F56D2.6 ddx-15 12282 7.734 0.946 0.972 0.977 0.972 0.960 0.960 0.966 0.981 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Source:UniProtKB/Swiss-Prot;Acc:Q20875]
34. K08F4.2 gtbp-1 25222 7.733 0.962 0.967 0.974 0.967 0.979 0.960 0.946 0.978 ras-Gtpase-activating protein SH3 (Three) domain-Binding Protein [Source:RefSeq peptide;Acc:NP_501842]
35. T25G3.3 T25G3.3 7285 7.732 0.964 0.980 0.941 0.980 0.966 0.953 0.972 0.976
36. K12C11.2 smo-1 12784 7.732 0.977 0.970 0.945 0.970 0.957 0.948 0.984 0.981 Small ubiquitin-related modifier [Source:UniProtKB/Swiss-Prot;Acc:P55853]
37. Y18D10A.16 Y18D10A.16 2881 7.731 0.978 0.929 0.962 0.929 0.990 0.990 0.976 0.977
38. T01E8.6 mrps-14 9328 7.728 0.949 0.982 0.935 0.982 0.956 0.977 0.976 0.971 Probable 40S ribosomal protein S14, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P49391]
39. F10E9.7 F10E9.7 1842 7.728 0.977 0.949 0.967 0.949 0.965 0.976 0.986 0.959
40. C08B11.5 sap-49 10553 7.726 0.975 0.963 0.968 0.963 0.939 0.966 0.975 0.977 Splicing factor 3B subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09442]
41. ZK1128.6 ttll-4 6059 7.726 0.955 0.980 0.974 0.980 0.985 0.967 0.942 0.943 Tubulin polyglutamylase ttll-4 [Source:UniProtKB/Swiss-Prot;Acc:Q09647]
42. C26E6.4 rpb-2 7053 7.725 0.950 0.977 0.946 0.977 0.960 0.970 0.978 0.967 DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578]
43. F32A5.7 lsm-4 3785 7.724 0.981 0.964 0.972 0.964 0.972 0.960 0.971 0.940 Probable U6 snRNA-associated Sm-like protein LSm4 [Source:UniProtKB/Swiss-Prot;Acc:Q19952]
44. D2030.6 prg-1 26751 7.724 0.939 0.975 0.985 0.975 0.929 0.976 0.974 0.971 Piwi-like protein [Source:RefSeq peptide;Acc:NP_492121]
45. Y39G10AR.7 ekl-7 7072 7.72 0.963 0.941 0.966 0.941 0.956 0.989 0.975 0.989
46. T19B4.2 npp-7 13073 7.718 0.978 0.963 0.968 0.963 0.952 0.965 0.971 0.958 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491665]
47. T12E12.2 cec-6 4758 7.717 0.915 0.966 0.974 0.966 0.965 0.969 0.980 0.982 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_500828]
48. C33H5.12 rsp-6 23342 7.716 0.978 0.977 0.972 0.977 0.945 0.942 0.957 0.968 Probable splicing factor, arginine/serine-rich 6 [Source:UniProtKB/Swiss-Prot;Acc:Q18409]
49. Y113G7B.5 fog-2 2753 7.715 0.943 0.961 0.953 0.961 0.982 0.974 0.977 0.964 Feminization Of Germline [Source:RefSeq peptide;Acc:NP_001041187]
50. F52C9.7 mog-3 9880 7.714 0.978 0.959 0.969 0.959 0.977 0.961 0.982 0.929 Masculinisation Of Germline [Source:RefSeq peptide;Acc:NP_498134]
51. F56D1.7 daz-1 23684 7.714 0.976 0.987 0.982 0.987 0.911 0.928 0.959 0.984 DAZ protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q20870]
52. Y65B4BL.2 deps-1 18277 7.712 0.967 0.982 0.964 0.982 0.935 0.953 0.946 0.983
53. F26B1.3 ima-2 18826 7.712 0.972 0.949 0.959 0.949 0.977 0.975 0.968 0.963 Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:P91276]
54. Y39E4B.2 snpc-1.2 5800 7.712 0.961 0.962 0.975 0.962 0.967 0.983 0.961 0.941 SNAPc (Small Nuclear RNA Activating Complex) homolog [Source:RefSeq peptide;Acc:NP_499719]
55. Y56A3A.17 npp-16 5391 7.712 0.978 0.949 0.976 0.949 0.958 0.968 0.959 0.975 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_499550]
56. F52F12.4 lsl-1 4055 7.711 0.955 0.974 0.951 0.974 0.979 0.979 0.956 0.943 LSY-2-Like [Source:RefSeq peptide;Acc:NP_492621]
57. C34E10.5 prmt-5 12277 7.711 0.945 0.980 0.981 0.980 0.944 0.974 0.961 0.946 Protein arginine N-methyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:P46580]
58. W01G7.3 rpb-11 7826 7.71 0.959 0.981 0.969 0.981 0.923 0.963 0.982 0.952 Probable DNA-directed RNA polymerase II subunit RPB11 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVH6]
59. Y54E5A.4 npp-4 6288 7.709 0.960 0.958 0.974 0.958 0.963 0.950 0.972 0.974 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_493552]
60. C27B7.1 spr-2 14958 7.709 0.972 0.971 0.976 0.971 0.939 0.955 0.950 0.975 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
61. K09H9.6 lpd-6 5459 7.708 0.944 0.956 0.973 0.956 0.975 0.986 0.980 0.938 LiPid Depleted [Source:RefSeq peptide;Acc:NP_491108]
62. R09B3.5 mag-1 7496 7.707 0.956 0.969 0.981 0.969 0.975 0.956 0.964 0.937 Protein mago nashi homolog [Source:UniProtKB/Swiss-Prot;Acc:P49029]
63. F28H1.3 aars-2 13537 7.706 0.968 0.968 0.972 0.968 0.959 0.935 0.966 0.970 Alanine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O01541]
64. C27H6.2 ruvb-1 6291 7.706 0.935 0.976 0.974 0.976 0.979 0.959 0.957 0.950 RuvB-like 1 [Source:UniProtKB/Swiss-Prot;Acc:O17607]
65. Y38A8.3 ulp-2 7403 7.705 0.966 0.963 0.966 0.963 0.952 0.986 0.958 0.951 Ubiquitin-Like Protease [Source:RefSeq peptide;Acc:NP_494914]
66. W06H3.3 ctps-1 8363 7.704 0.947 0.968 0.958 0.968 0.960 0.978 0.961 0.964 CTP synthase [Source:RefSeq peptide;Acc:NP_507243]
67. C46A5.9 hcf-1 6295 7.703 0.957 0.959 0.967 0.959 0.983 0.975 0.961 0.942 human HCF1 related [Source:RefSeq peptide;Acc:NP_501279]
68. C16C10.4 C16C10.4 3439 7.703 0.948 0.958 0.962 0.958 0.984 0.975 0.958 0.960 Probable histone deacetylase complex subunit SAP18 [Source:UniProtKB/Swiss-Prot;Acc:Q09250]
69. F10G7.3 unc-85 5206 7.698 0.967 0.942 0.953 0.942 0.966 0.980 0.980 0.968 Probable histone chaperone asf-1 [Source:UniProtKB/Swiss-Prot;Acc:Q19326]
70. R07E5.14 rnp-4 11659 7.698 0.973 0.958 0.961 0.958 0.974 0.956 0.949 0.969 RNA-binding protein 8A [Source:RefSeq peptide;Acc:NP_497891]
71. PAR2.1 mtss-1 4055 7.697 0.932 0.945 0.955 0.945 0.958 0.984 0.989 0.989 Single-stranded DNA-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34496]
72. F56F3.1 ifet-1 25772 7.696 0.936 0.967 0.968 0.967 0.947 0.967 0.971 0.973 Translational repressor ifet-1 [Source:UniProtKB/Swiss-Prot;Acc:Q20898]
73. C14A4.4 crn-3 6558 7.695 0.936 0.973 0.952 0.973 0.958 0.955 0.956 0.992 Cell-death-Related Nuclease [Source:RefSeq peptide;Acc:NP_871964]
74. Y17G7B.5 mcm-2 6246 7.694 0.942 0.947 0.969 0.947 0.987 0.948 0.978 0.976 DNA helicase [Source:RefSeq peptide;Acc:NP_001022416]
75. F58D5.1 hrp-2 17211 7.694 0.979 0.970 0.974 0.970 0.926 0.939 0.976 0.960 human HnRNP A1 homolog [Source:RefSeq peptide;Acc:NP_493049]
76. H27M09.2 rpb-5 4744 7.694 0.958 0.945 0.943 0.945 0.989 0.973 0.967 0.974 DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9N5K2]
77. Y37E3.3 rpb-10 4051 7.693 0.968 0.951 0.946 0.951 0.985 0.964 0.962 0.966 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Source:UniProtKB/Swiss-Prot;Acc:Q9GR61]
78. F28B3.8 imb-1 7515 7.692 0.958 0.971 0.945 0.971 0.968 0.953 0.973 0.953 IMportin Beta family [Source:RefSeq peptide;Acc:NP_491477]
79. Y73B6BL.33 hrpf-2 4443 7.692 0.958 0.960 0.976 0.960 0.964 0.972 0.932 0.970 HnRNP F homolog [Source:RefSeq peptide;Acc:NP_001293781]
80. F53F4.12 F53F4.12 2683 7.69 0.937 0.956 0.939 0.956 0.980 0.983 0.981 0.958
81. Y54E5A.6 Y54E5A.6 770 7.689 0.932 0.964 0.965 0.964 0.970 0.977 0.963 0.954
82. R13F6.10 cra-1 11610 7.689 0.944 0.975 0.957 0.975 0.949 0.954 0.954 0.981 N-terminal acetyltransferase B complex subunit NAA25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q21986]
83. T02G5.9 kars-1 9763 7.687 0.924 0.970 0.926 0.970 0.974 0.972 0.972 0.979 Lysine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:Q22099]
84. Y37E3.15 npp-13 7250 7.687 0.976 0.958 0.951 0.958 0.960 0.932 0.984 0.968 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_001293351]
85. ZK328.2 eftu-2 7040 7.687 0.944 0.977 0.954 0.977 0.965 0.937 0.958 0.975 Elongation Factor TU family [Source:RefSeq peptide;Acc:NP_498308]
86. W06E11.4 sbds-1 6701 7.686 0.966 0.974 0.953 0.974 0.973 0.980 0.965 0.901 Ribosome maturation protein SBDS [Source:UniProtKB/Swiss-Prot;Acc:Q23202]
87. R53.2 dtmk-1 6821 7.686 0.955 0.967 0.948 0.967 0.965 0.984 0.941 0.959 Thymidylate kinase [Source:UniProtKB/Swiss-Prot;Acc:Q22018]
88. Y18D10A.1 attf-6 6942 7.685 0.887 0.981 0.968 0.981 0.979 0.941 0.971 0.977 AT hook Transcription Factor family [Source:RefSeq peptide;Acc:NP_871800]
89. F42A6.7 hrp-1 28201 7.685 0.978 0.970 0.973 0.970 0.940 0.923 0.975 0.956 Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q22037]
90. R06F6.1 cdl-1 14167 7.684 0.927 0.953 0.949 0.953 0.972 0.994 0.976 0.960 Histone RNA hairpin-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q09599]
91. C23G10.8 C23G10.8 4642 7.683 0.941 0.967 0.977 0.967 0.961 0.969 0.955 0.946
92. C26E6.7 eri-9 8069 7.682 0.971 0.956 0.949 0.956 0.979 0.979 0.968 0.924 Enhanced RNAI (RNA interference) [Source:RefSeq peptide;Acc:NP_001293626]
93. K04C2.3 K04C2.3 23540 7.681 0.918 0.952 0.948 0.952 0.979 0.984 0.974 0.974
94. T06A10.4 lsy-13 7631 7.681 0.943 0.968 0.964 0.968 0.934 0.975 0.974 0.955
95. F31E3.3 rfc-4 3828 7.678 0.962 0.959 0.955 0.959 0.938 0.979 0.984 0.942 Replication factor C subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:P53016]
96. F53A2.4 nud-1 7818 7.678 0.947 0.957 0.976 0.957 0.987 0.982 0.943 0.929 Aspergillus NUclear Division related [Source:RefSeq peptide;Acc:NP_499749]
97. Y56A3A.29 ung-1 1900 7.677 0.939 0.955 0.929 0.955 0.969 0.983 0.977 0.970 Uracil DNA N-Glycosylase [Source:RefSeq peptide;Acc:NP_001255149]
98. F21C3.4 rde-2 6286 7.675 0.947 0.962 0.974 0.962 0.969 0.980 0.951 0.930
99. R12C12.2 ran-5 14517 7.674 0.985 0.943 0.963 0.943 0.946 0.947 0.984 0.963 associated with RAN (nuclear import/export) function [Source:RefSeq peptide;Acc:NP_495208]
100. D2023.5 mpst-1 10328 7.673 0.934 0.978 0.945 0.978 0.971 0.980 0.953 0.934 Putative thiosulfate sulfurtransferase mpst-1 [Source:UniProtKB/Swiss-Prot;Acc:O17730]

There are 3065 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA