C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for R11D1.9

Gene ID Gene Name Reads Transcripts Annotation
R11D1.9 mrpl-49 2191 R11D1.9 Probable 39S ribosomal protein L49, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q21939]

Genes with expression patterns similar to R11D1.9

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. R11D1.9 mrpl-49 2191 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Probable 39S ribosomal protein L49, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q21939]
2. C05D11.10 mrps-17 4613 7.57 0.966 0.896 0.957 0.896 0.948 0.968 0.961 0.978 28S ribosomal protein S17, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q11189]
3. F43C1.6 mrpl-21 2778 7.569 0.972 0.923 0.926 0.923 0.968 0.975 0.951 0.931 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_001022585]
4. C14A4.14 mrps-22 7966 7.568 0.959 0.895 0.939 0.895 0.986 0.958 0.955 0.981 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_496281]
5. Y50D7A.9 taco-1 5949 7.562 0.942 0.908 0.946 0.908 0.976 0.960 0.957 0.965 Translational Activator of Cytochrome c Oxidase [Source:RefSeq peptide;Acc:NP_497183]
6. T24H7.1 phb-2 28775 7.562 0.969 0.901 0.924 0.901 0.958 0.976 0.961 0.972 Mitochondrial prohibitin complex protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P50093]
7. Y49A3A.5 cyn-1 6411 7.561 0.965 0.911 0.890 0.911 0.982 0.967 0.959 0.976 Peptidyl-prolyl cis-trans isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P52009]
8. F56B3.8 mrpl-2 3195 7.55 0.953 0.887 0.964 0.887 0.965 0.977 0.941 0.976 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_499987]
9. F22B5.9 fars-3 7209 7.549 0.962 0.917 0.930 0.917 0.969 0.952 0.952 0.950 Phenylalanine--tRNA ligase beta subunit [Source:UniProtKB/Swiss-Prot;Acc:Q19713]
10. B0205.11 mrpl-9 9162 7.534 0.960 0.920 0.923 0.920 0.967 0.947 0.941 0.956 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_492810]
11. F28H1.3 aars-2 13537 7.517 0.945 0.918 0.898 0.918 0.976 0.955 0.943 0.964 Alanine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O01541]
12. W04B5.4 mrpl-30 4938 7.513 0.939 0.892 0.930 0.892 0.954 0.990 0.960 0.956 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_497550]
13. C06A1.5 rpb-6 7515 7.512 0.953 0.897 0.926 0.897 0.949 0.976 0.949 0.965 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Source:UniProtKB/Swiss-Prot;Acc:Q17684]
14. Y116A8C.42 snr-1 17062 7.507 0.968 0.906 0.894 0.906 0.959 0.941 0.973 0.960 Small nuclear ribonucleoprotein Sm D3 [Source:UniProtKB/Swiss-Prot;Acc:Q17348]
15. T28D9.10 snr-3 9995 7.502 0.973 0.880 0.911 0.880 0.961 0.950 0.972 0.975 Probable small nuclear ribonucleoprotein Sm D1 [Source:UniProtKB/Swiss-Prot;Acc:Q10013]
16. R13A5.12 lpd-7 10476 7.499 0.932 0.905 0.912 0.905 0.944 0.956 0.974 0.971 Pescadillo homolog [Source:UniProtKB/Swiss-Prot;Acc:Q95Y89]
17. T01E8.6 mrps-14 9328 7.497 0.968 0.891 0.925 0.891 0.967 0.950 0.947 0.958 Probable 40S ribosomal protein S14, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P49391]
18. ZK652.1 snr-5 5993 7.489 0.968 0.887 0.934 0.887 0.945 0.964 0.934 0.970 Probable small nuclear ribonucleoprotein F [Source:UniProtKB/Swiss-Prot;Acc:P34659]
19. D2023.5 mpst-1 10328 7.485 0.953 0.893 0.907 0.893 0.946 0.984 0.955 0.954 Putative thiosulfate sulfurtransferase mpst-1 [Source:UniProtKB/Swiss-Prot;Acc:O17730]
20. Y56A3A.19 Y56A3A.19 9680 7.482 0.946 0.902 0.879 0.902 0.940 0.979 0.965 0.969 Acyl carrier protein [Source:RefSeq peptide;Acc:NP_499549]
21. F13G3.11 mrpl-13 6024 7.48 0.944 0.885 0.910 0.885 0.956 0.982 0.964 0.954 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_492067]
22. B0261.4 mrpl-47 8210 7.478 0.947 0.884 0.934 0.884 0.982 0.933 0.945 0.969 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_001040632]
23. T07D4.4 ddx-19 7234 7.476 0.948 0.911 0.923 0.911 0.912 0.960 0.966 0.945 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_001254186]
24. C26E6.4 rpb-2 7053 7.475 0.925 0.909 0.917 0.909 0.961 0.952 0.933 0.969 DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578]
25. T21B10.1 mrpl-50 14595 7.474 0.954 0.903 0.927 0.903 0.940 0.942 0.963 0.942 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_495899]
26. H27M09.2 rpb-5 4744 7.474 0.953 0.898 0.915 0.898 0.909 0.964 0.981 0.956 DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9N5K2]
27. B0303.15 mrpl-11 9889 7.473 0.952 0.886 0.913 0.886 0.966 0.963 0.952 0.955 Probable 39S ribosomal protein L11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34264]
28. Y71F9B.4 snr-7 13542 7.47 0.980 0.896 0.889 0.896 0.924 0.954 0.956 0.975 Probable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:Q9N4G9]
29. C27H5.3 fust-1 6978 7.47 0.943 0.897 0.938 0.897 0.939 0.952 0.937 0.967 FUS/TLS RNA binding protein homolog [Source:RefSeq peptide;Acc:NP_495483]
30. W08E3.1 snr-2 14849 7.47 0.955 0.915 0.908 0.915 0.890 0.963 0.963 0.961 Probable small nuclear ribonucleoprotein-associated protein B [Source:UniProtKB/Swiss-Prot;Acc:P91918]
31. ZC410.2 mppb-1 3991 7.467 0.929 0.883 0.943 0.883 0.952 0.964 0.948 0.965 Mitochondrial Processing Peptidase Beta [Source:RefSeq peptide;Acc:NP_501576]
32. B0511.8 mrps-30 5050 7.466 0.914 0.915 0.925 0.915 0.975 0.928 0.947 0.947 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_492783]
33. T02G5.9 kars-1 9763 7.466 0.945 0.900 0.936 0.900 0.956 0.940 0.936 0.953 Lysine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:Q22099]
34. R07E5.14 rnp-4 11659 7.462 0.945 0.878 0.899 0.878 0.953 0.958 0.978 0.973 RNA-binding protein 8A [Source:RefSeq peptide;Acc:NP_497891]
35. T08B2.9 fars-1 12650 7.459 0.975 0.918 0.913 0.918 0.948 0.910 0.938 0.939 Phenylalanyl Amino-acyl tRNA Synthetase [Source:RefSeq peptide;Acc:NP_491792]
36. F26F4.11 rpb-8 7601 7.457 0.969 0.871 0.907 0.871 0.959 0.976 0.952 0.952 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Source:UniProtKB/Swiss-Prot;Acc:Q19826]
37. F59A2.3 cri-3 15077 7.456 0.961 0.857 0.930 0.857 0.968 0.963 0.955 0.965 Conserved regulator of innate immunity protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q21018]
38. K08F4.2 gtbp-1 25222 7.455 0.957 0.893 0.889 0.893 0.949 0.923 0.966 0.985 ras-Gtpase-activating protein SH3 (Three) domain-Binding Protein [Source:RefSeq peptide;Acc:NP_501842]
39. C30C11.1 mrpl-32 5238 7.454 0.951 0.867 0.930 0.867 0.962 0.966 0.964 0.947 Probable 39S ribosomal protein L32, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q04907]
40. Y73B6BL.32 lsm-8 11002 7.453 0.965 0.901 0.917 0.901 0.944 0.965 0.926 0.934 LSM Sm-like protein [Source:RefSeq peptide;Acc:NP_500964]
41. C47B2.9 C47B2.9 4096 7.452 0.980 0.885 0.903 0.885 0.961 0.970 0.932 0.936
42. F29C4.6 tut-1 5637 7.451 0.943 0.900 0.936 0.900 0.959 0.950 0.919 0.944 Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O76365]
43. ZK863.6 dpy-30 16177 7.45 0.954 0.895 0.926 0.895 0.959 0.917 0.950 0.954 Dosage compensation protein dpy-30 [Source:UniProtKB/Swiss-Prot;Acc:Q10661]
44. Y54E5A.6 Y54E5A.6 770 7.449 0.970 0.866 0.901 0.866 0.953 0.954 0.972 0.967
45. C14A4.1 dohh-1 4890 7.448 0.916 0.898 0.902 0.898 0.963 0.959 0.965 0.947 Deoxyhypusine hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q17949]
46. C27H6.3 tofu-1 2992 7.447 0.935 0.901 0.921 0.901 0.937 0.952 0.984 0.916 Twenty One u-rna (21U-RNA) biogenesis Fouled Up [Source:RefSeq peptide;Acc:NP_505568]
47. D2013.7 eif-3.F 21004 7.447 0.981 0.925 0.911 0.925 0.939 0.912 0.901 0.953 Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:Q18967]
48. Y119C1B.4 mrpl-19 2634 7.446 0.959 0.909 0.898 0.909 0.939 0.957 0.930 0.945 Probable 39S ribosomal protein L19, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q95Y83]
49. W06H3.3 ctps-1 8363 7.445 0.977 0.849 0.906 0.849 0.959 0.966 0.974 0.965 CTP synthase [Source:RefSeq peptide;Acc:NP_507243]
50. T14B4.3 T14B4.3 2875 7.444 0.963 0.890 0.897 0.890 0.956 0.929 0.954 0.965
51. F55H2.6 clu-1 21404 7.444 0.920 0.903 0.905 0.903 0.953 0.945 0.943 0.972 Clustered mitochondria protein homolog [Source:UniProtKB/Swiss-Prot;Acc:P34466]
52. R151.9 pfd-5 6951 7.443 0.963 0.881 0.917 0.881 0.968 0.935 0.942 0.956 Probable prefoldin subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q21993]
53. ZK742.1 xpo-1 20741 7.442 0.875 0.908 0.913 0.908 0.961 0.966 0.936 0.975 eXPOrtin (nuclear export receptor) [Source:RefSeq peptide;Acc:NP_741567]
54. W04D2.5 mrps-11 5757 7.439 0.974 0.904 0.937 0.904 0.947 0.937 0.916 0.920 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_506131]
55. F59E12.11 sam-4 8179 7.439 0.929 0.892 0.915 0.892 0.959 0.938 0.943 0.971
56. C26B2.6 elpc-4 3600 7.438 0.924 0.916 0.872 0.916 0.936 0.956 0.975 0.943 Putative elongator complex protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q18195]
57. R74.1 lars-1 8467 7.438 0.939 0.912 0.922 0.912 0.963 0.901 0.936 0.953 Leucine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:Q09996]
58. T13H5.5 mrps-18B 3430 7.437 0.966 0.890 0.913 0.890 0.960 0.956 0.905 0.957 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_495800]
59. F21D5.8 mrps-33 2788 7.436 0.943 0.912 0.856 0.912 0.969 0.972 0.942 0.930 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_501505]
60. Y37E3.9 phb-1 29211 7.435 0.970 0.879 0.921 0.879 0.960 0.940 0.923 0.963 Mitochondrial prohibitin complex protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BKU4]
61. F56D1.3 mrps-16 2309 7.434 0.971 0.926 0.893 0.926 0.950 0.966 0.885 0.917 Probable 28S ribosomal protein S16, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q10129]
62. F25H5.4 eef-2 34846 7.434 0.955 0.902 0.951 0.902 0.952 0.869 0.933 0.970 Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:P29691]
63. F41G3.14 exos-8 2300 7.432 0.942 0.914 0.905 0.914 0.933 0.959 0.920 0.945 EXOSome (multiexonuclease complex) component [Source:RefSeq peptide;Acc:NP_495376]
64. T21B10.7 cct-2 13999 7.431 0.956 0.893 0.899 0.893 0.937 0.933 0.973 0.947 T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:P47207]
65. T23H2.1 npp-12 12425 7.431 0.924 0.911 0.887 0.911 0.969 0.963 0.922 0.944 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491855]
66. ZK652.9 coq-5 5143 7.43 0.943 0.900 0.958 0.900 0.953 0.966 0.872 0.938 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34666]
67. F58E10.3 ddx-17 15107 7.43 0.934 0.889 0.890 0.889 0.964 0.956 0.939 0.969 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_001041134]
68. H43I07.2 rpac-40 3342 7.429 0.936 0.919 0.885 0.919 0.954 0.956 0.934 0.926 RNA Polymerase I/III (A/C) shared subunit [Source:RefSeq peptide;Acc:NP_504166]
69. H20J04.5 pfd-2 8082 7.428 0.962 0.884 0.922 0.884 0.960 0.921 0.952 0.943 Prefoldin subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9N5M2]
70. F33D4.5 mrpl-1 5337 7.427 0.953 0.905 0.899 0.905 0.945 0.959 0.876 0.985 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_501257]
71. T11G6.1 hars-1 7908 7.427 0.953 0.905 0.924 0.905 0.964 0.925 0.904 0.947 Histidine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:P34183]
72. F32A5.7 lsm-4 3785 7.427 0.949 0.889 0.875 0.889 0.951 0.959 0.948 0.967 Probable U6 snRNA-associated Sm-like protein LSm4 [Source:UniProtKB/Swiss-Prot;Acc:Q19952]
73. F32H2.1 snpc-4 7581 7.425 0.939 0.899 0.871 0.899 0.966 0.931 0.957 0.963 snRNA-activating protein complex subunit 4 homolog [Source:UniProtKB/Swiss-Prot;Acc:P91868]
74. F54A3.3 cct-3 25183 7.424 0.959 0.907 0.926 0.907 0.943 0.905 0.956 0.921 T-complex protein 1 subunit gamma [Source:RefSeq peptide;Acc:NP_494218]
75. C15H11.9 rrbs-1 9177 7.424 0.905 0.886 0.913 0.886 0.921 0.963 0.975 0.975 Ribosome biogenesis regulatory protein homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9XVT0]
76. K08F11.3 cif-1 10218 7.423 0.971 0.889 0.937 0.889 0.950 0.900 0.912 0.975 COP9/Signalosome and eIF3 complex-shared subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94261]
77. C26D10.2 hel-1 28697 7.423 0.976 0.906 0.917 0.906 0.938 0.922 0.890 0.968 Spliceosome RNA helicase DDX39B homolog [Source:UniProtKB/Swiss-Prot;Acc:Q18212]
78. K07A12.7 mrps-15 6325 7.422 0.969 0.917 0.918 0.917 0.958 0.875 0.908 0.960 28S ribosomal protein S15, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9NAP9]
79. Y37D8A.18 mrps-10 4551 7.422 0.967 0.876 0.935 0.876 0.955 0.943 0.963 0.907 Probable 28S ribosomal protein S10, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XWV5]
80. T10B5.5 cct-7 24616 7.422 0.934 0.896 0.891 0.896 0.955 0.920 0.961 0.969 Chaperonin Containing TCP-1 [Source:RefSeq peptide;Acc:NP_503522]
81. T04A8.11 mrpl-16 5998 7.421 0.960 0.907 0.893 0.907 0.982 0.921 0.902 0.949 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_497965]
82. R12E2.12 mrps-6 4708 7.421 0.969 0.857 0.896 0.857 0.961 0.973 0.939 0.969 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_491318]
83. T16G1.11 eif-3.K 14014 7.42 0.969 0.896 0.914 0.896 0.950 0.928 0.913 0.954 Eukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/Swiss-Prot;Acc:Q9XUP3]
84. F58B3.5 mars-1 6729 7.42 0.948 0.877 0.934 0.877 0.954 0.948 0.955 0.927 Methionine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q20970]
85. C34E10.2 gop-2 5684 7.42 0.954 0.891 0.895 0.891 0.940 0.941 0.968 0.940 GPN-loop GTPase 1 [Source:UniProtKB/Swiss-Prot;Acc:P46577]
86. B0205.9 B0205.9 3651 7.419 0.968 0.888 0.910 0.888 0.921 0.956 0.952 0.936
87. F59A2.1 npp-9 34375 7.418 0.931 0.883 0.877 0.883 0.943 0.975 0.967 0.959 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_871701]
88. Y62E10A.11 mdt-9 5971 7.418 0.961 0.876 0.915 0.876 0.956 0.957 0.944 0.933 MeDiaTor [Source:RefSeq peptide;Acc:NP_001255737]
89. C36B1.5 prp-4 2714 7.416 0.912 0.927 0.903 0.927 0.939 0.962 0.899 0.947 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_492363]
90. T06A10.4 lsy-13 7631 7.415 0.955 0.873 0.918 0.873 0.971 0.968 0.955 0.902
91. C09D4.5 rpl-19 56944 7.415 0.962 0.927 0.944 0.927 0.930 0.870 0.927 0.928 60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:O02639]
92. F28B3.8 imb-1 7515 7.413 0.882 0.929 0.925 0.929 0.940 0.889 0.946 0.973 IMportin Beta family [Source:RefSeq peptide;Acc:NP_491477]
93. Y34D9A.1 mrpl-38 5291 7.412 0.944 0.905 0.925 0.905 0.955 0.926 0.903 0.949 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_490808]
94. Y53C12B.3 nos-3 20231 7.412 0.937 0.901 0.884 0.901 0.946 0.885 0.975 0.983 NanOS related [Source:RefSeq peptide;Acc:NP_496101]
95. R09B3.5 mag-1 7496 7.411 0.964 0.896 0.893 0.896 0.941 0.946 0.926 0.949 Protein mago nashi homolog [Source:UniProtKB/Swiss-Prot;Acc:P49029]
96. F33D4.8 mrps-24 2853 7.409 0.940 0.855 0.932 0.855 0.977 0.964 0.938 0.948 28S ribosomal protein S24, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q688C0]
97. W08E3.3 ola-1 20885 7.408 0.967 0.869 0.914 0.869 0.971 0.932 0.946 0.940 Obg-like ATPase 1 [Source:UniProtKB/Swiss-Prot;Acc:P91917]
98. H21P03.1 mbf-1 25586 7.407 0.967 0.908 0.928 0.908 0.955 0.906 0.904 0.931 MBF (multiprotein bridging factor) transcriptional coactivator [Source:RefSeq peptide;Acc:NP_502166]
99. B0336.9 swp-1 52442 7.405 0.961 0.921 0.935 0.921 0.936 0.879 0.929 0.923 splicing factor (Suppressor of White aPricot) related [Source:RefSeq peptide;Acc:NP_001021121]
100. F56D12.5 vig-1 42594 7.405 0.960 0.889 0.903 0.889 0.967 0.898 0.926 0.973 VIG (Drosophila Vasa Intronic Gene) ortholog [Source:RefSeq peptide;Acc:NP_740971]

There are 1179 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA