C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for ZK1058.4

Gene ID Gene Name Reads Transcripts Annotation
ZK1058.4 ccdc-47 8879 ZK1058.4.1, ZK1058.4.2 CCDC (human Coiled Coil Domain Containing) homolog [Source:RefSeq peptide;Acc:NP_497788]

Genes with expression patterns similar to ZK1058.4

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. ZK1058.4 ccdc-47 8879 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 CCDC (human Coiled Coil Domain Containing) homolog [Source:RefSeq peptide;Acc:NP_497788]
2. F28H1.3 aars-2 13537 7.807 0.985 0.974 0.983 0.974 0.976 0.989 0.967 0.959 Alanine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O01541]
3. ZK742.1 xpo-1 20741 7.761 0.969 0.968 0.968 0.968 0.989 0.976 0.968 0.955 eXPOrtin (nuclear export receptor) [Source:RefSeq peptide;Acc:NP_741567]
4. F13G3.4 dylt-1 21345 7.751 0.942 0.984 0.980 0.984 0.986 0.979 0.933 0.963 DYnein Light chain (Tctex type) [Source:RefSeq peptide;Acc:NP_492063]
5. C08B11.5 sap-49 10553 7.751 0.982 0.967 0.979 0.967 0.983 0.968 0.957 0.948 Splicing factor 3B subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09442]
6. K11D12.2 pqn-51 15951 7.744 0.958 0.970 0.975 0.970 0.984 0.981 0.940 0.966 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_504355]
7. T16G1.11 eif-3.K 14014 7.74 0.968 0.963 0.980 0.963 0.977 0.975 0.965 0.949 Eukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/Swiss-Prot;Acc:Q9XUP3]
8. C33H5.12 rsp-6 23342 7.736 0.979 0.976 0.973 0.976 0.974 0.954 0.948 0.956 Probable splicing factor, arginine/serine-rich 6 [Source:UniProtKB/Swiss-Prot;Acc:Q18409]
9. T10F2.4 prp-19 11298 7.731 0.974 0.978 0.959 0.978 0.976 0.939 0.968 0.959 Pre-mRNA-processing factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q10051]
10. F42A6.7 hrp-1 28201 7.729 0.985 0.950 0.982 0.950 0.980 0.953 0.979 0.950 Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q22037]
11. F32A5.7 lsm-4 3785 7.728 0.983 0.971 0.954 0.971 0.974 0.976 0.958 0.941 Probable U6 snRNA-associated Sm-like protein LSm4 [Source:UniProtKB/Swiss-Prot;Acc:Q19952]
12. T17E9.2 nmt-1 8017 7.726 0.955 0.984 0.968 0.984 0.957 0.967 0.960 0.951 Probable glycylpeptide N-tetradecanoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:P46548]
13. C25D7.8 otub-1 7941 7.724 0.974 0.955 0.960 0.955 0.986 0.967 0.961 0.966 Ubiquitin thioesterase otubain-like [Source:UniProtKB/Swiss-Prot;Acc:Q9XVR6]
14. W08E3.3 ola-1 20885 7.722 0.948 0.963 0.966 0.963 0.984 0.980 0.958 0.960 Obg-like ATPase 1 [Source:UniProtKB/Swiss-Prot;Acc:P91917]
15. F58D5.1 hrp-2 17211 7.722 0.966 0.975 0.959 0.975 0.972 0.967 0.969 0.939 human HnRNP A1 homolog [Source:RefSeq peptide;Acc:NP_493049]
16. ZK863.6 dpy-30 16177 7.721 0.983 0.978 0.969 0.978 0.964 0.974 0.913 0.962 Dosage compensation protein dpy-30 [Source:UniProtKB/Swiss-Prot;Acc:Q10661]
17. Y54E5A.4 npp-4 6288 7.717 0.963 0.961 0.965 0.961 0.984 0.965 0.956 0.962 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_493552]
18. C15H11.4 dhs-22 21674 7.716 0.971 0.966 0.976 0.966 0.973 0.964 0.948 0.952 DeHydrogenases, Short chain [Source:RefSeq peptide;Acc:NP_506570]
19. R05D11.3 ran-4 15494 7.714 0.981 0.973 0.967 0.973 0.969 0.963 0.948 0.940 Probable nuclear transport factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q21735]
20. ZK616.6 perm-3 16186 7.713 0.974 0.984 0.954 0.984 0.973 0.982 0.919 0.943 PERMeable eggshell [Source:RefSeq peptide;Acc:NP_001293836]
21. K08E7.1 eak-7 18960 7.711 0.978 0.958 0.955 0.958 0.978 0.985 0.922 0.977 Enhancer of AKt-1 null [Source:RefSeq peptide;Acc:NP_502405]
22. R09B3.5 mag-1 7496 7.711 0.956 0.972 0.948 0.972 0.956 0.990 0.950 0.967 Protein mago nashi homolog [Source:UniProtKB/Swiss-Prot;Acc:P49029]
23. T08B2.9 fars-1 12650 7.709 0.950 0.975 0.981 0.975 0.963 0.977 0.944 0.944 Phenylalanyl Amino-acyl tRNA Synthetase [Source:RefSeq peptide;Acc:NP_491792]
24. C34E10.5 prmt-5 12277 7.701 0.933 0.984 0.959 0.984 0.974 0.974 0.948 0.945 Protein arginine N-methyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:P46580]
25. T23H2.1 npp-12 12425 7.7 0.959 0.965 0.952 0.965 0.968 0.978 0.965 0.948 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491855]
26. Y111B2A.18 rsp-3 43731 7.7 0.989 0.965 0.964 0.965 0.978 0.947 0.925 0.967 Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]
27. K01G5.4 ran-1 32379 7.696 0.983 0.960 0.945 0.960 0.974 0.973 0.944 0.957 GTP-binding nuclear protein ran-1 [Source:UniProtKB/Swiss-Prot;Acc:O17915]
28. T10B5.5 cct-7 24616 7.695 0.933 0.975 0.956 0.975 0.984 0.976 0.935 0.961 Chaperonin Containing TCP-1 [Source:RefSeq peptide;Acc:NP_503522]
29. C26E6.4 rpb-2 7053 7.695 0.930 0.973 0.965 0.973 0.977 0.977 0.959 0.941 DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578]
30. H17B01.4 emc-1 9037 7.694 0.944 0.972 0.951 0.972 0.980 0.980 0.929 0.966 EMC Endoplasmic Membrane protein Complex (yeast EMC) homolog [Source:RefSeq peptide;Acc:NP_493980]
31. K08F11.3 cif-1 10218 7.694 0.964 0.972 0.938 0.972 0.977 0.966 0.949 0.956 COP9/Signalosome and eIF3 complex-shared subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94261]
32. C18D11.4 rsp-8 18308 7.693 0.975 0.975 0.968 0.975 0.964 0.939 0.947 0.950 SR Protein (splicing factor) [Source:RefSeq peptide;Acc:NP_001255142]
33. ZK637.3 lnkn-1 16095 7.691 0.966 0.981 0.973 0.981 0.971 0.935 0.931 0.953 Putative protein tag-256 [Source:RefSeq peptide;Acc:NP_498963]
34. F58E10.3 ddx-17 15107 7.688 0.975 0.977 0.960 0.977 0.967 0.963 0.911 0.958 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_001041134]
35. F22D6.3 nars-1 18624 7.687 0.973 0.975 0.951 0.975 0.978 0.986 0.905 0.944 Asparagine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q19722]
36. H19N07.1 erfa-3 19869 7.687 0.951 0.979 0.958 0.979 0.986 0.979 0.915 0.940 Eukaryotic Release FActor homolog [Source:RefSeq peptide;Acc:NP_001256292]
37. F56D2.6 ddx-15 12282 7.686 0.925 0.973 0.959 0.973 0.976 0.961 0.956 0.963 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Source:UniProtKB/Swiss-Prot;Acc:Q20875]
38. T11G6.1 hars-1 7908 7.685 0.967 0.961 0.974 0.961 0.964 0.969 0.954 0.935 Histidine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:P34183]
39. T01E8.6 mrps-14 9328 7.685 0.937 0.980 0.963 0.980 0.959 0.974 0.946 0.946 Probable 40S ribosomal protein S14, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P49391]
40. F33D4.5 mrpl-1 5337 7.68 0.933 0.966 0.955 0.966 0.968 0.975 0.968 0.949 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_501257]
41. T19B4.2 npp-7 13073 7.679 0.965 0.963 0.962 0.963 0.977 0.973 0.925 0.951 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491665]
42. T04A8.14 emb-5 11746 7.674 0.963 0.967 0.944 0.967 0.974 0.977 0.932 0.950 Suppressor of Ty 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34703]
43. F26F4.10 rars-1 9971 7.674 0.965 0.962 0.960 0.962 0.971 0.968 0.942 0.944 Probable arginine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q19825]
44. H21P03.1 mbf-1 25586 7.673 0.934 0.960 0.966 0.960 0.977 0.970 0.962 0.944 MBF (multiprotein bridging factor) transcriptional coactivator [Source:RefSeq peptide;Acc:NP_502166]
45. T05H4.6 erfa-1 12542 7.672 0.943 0.970 0.953 0.970 0.967 0.977 0.954 0.938 Eukaryotic peptide chain release factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O16520]
46. F32E10.6 cec-5 10643 7.671 0.972 0.968 0.943 0.968 0.978 0.959 0.940 0.943 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_501232]
47. F08F8.3 kap-1 31437 7.665 0.967 0.958 0.953 0.958 0.976 0.957 0.945 0.951 Kinesin-Associated Protein [Source:RefSeq peptide;Acc:NP_001021246]
48. T02G5.9 kars-1 9763 7.664 0.943 0.979 0.957 0.979 0.976 0.970 0.927 0.933 Lysine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:Q22099]
49. W02B12.3 rsp-1 9235 7.661 0.976 0.973 0.952 0.973 0.961 0.958 0.930 0.938 Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121]
50. B0464.7 baf-1 10161 7.661 0.967 0.967 0.893 0.967 0.963 0.973 0.968 0.963 Barrier-to-autointegration factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q03565]
51. C52E4.6 cyl-1 6405 7.659 0.975 0.970 0.915 0.970 0.968 0.961 0.958 0.942 CYclin L [Source:RefSeq peptide;Acc:NP_506007]
52. F01F1.8 cct-6 29460 7.659 0.978 0.983 0.978 0.983 0.976 0.960 0.848 0.953 T-complex protein 1 subunit zeta [Source:UniProtKB/Swiss-Prot;Acc:P46550]
53. R12C12.2 ran-5 14517 7.656 0.975 0.950 0.939 0.950 0.970 0.978 0.945 0.949 associated with RAN (nuclear import/export) function [Source:RefSeq peptide;Acc:NP_495208]
54. F28B3.8 imb-1 7515 7.654 0.943 0.985 0.944 0.985 0.960 0.951 0.949 0.937 IMportin Beta family [Source:RefSeq peptide;Acc:NP_491477]
55. C18A3.5 tiar-1 25400 7.654 0.974 0.962 0.954 0.962 0.971 0.962 0.951 0.918 TIA-1/TIAL RNA binding protein homolog [Source:RefSeq peptide;Acc:NP_495121]
56. T12D8.8 hip-1 18283 7.65 0.977 0.967 0.935 0.967 0.965 0.945 0.953 0.941 Hsp-70 Interacting Protein homolog [Source:RefSeq peptide;Acc:NP_499811]
57. F32H2.1 snpc-4 7581 7.649 0.952 0.958 0.941 0.958 0.970 0.964 0.951 0.955 snRNA-activating protein complex subunit 4 homolog [Source:UniProtKB/Swiss-Prot;Acc:P91868]
58. T05C12.7 cct-1 41264 7.648 0.980 0.968 0.978 0.968 0.979 0.962 0.888 0.925 T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P41988]
59. Y46G5A.4 snrp-200 13827 7.648 0.903 0.968 0.959 0.968 0.977 0.963 0.962 0.948 Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Source:UniProtKB/Swiss-Prot;Acc:Q9U2G0]
60. C06A1.5 rpb-6 7515 7.647 0.960 0.975 0.963 0.975 0.958 0.951 0.938 0.927 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Source:UniProtKB/Swiss-Prot;Acc:Q17684]
61. R07E5.14 rnp-4 11659 7.647 0.979 0.964 0.968 0.964 0.952 0.978 0.882 0.960 RNA-binding protein 8A [Source:RefSeq peptide;Acc:NP_497891]
62. T12D8.3 acbp-5 6816 7.646 0.977 0.968 0.931 0.968 0.965 0.939 0.931 0.967 Acyl-Coenzyme A Binding Protein [Source:RefSeq peptide;Acc:NP_499817]
63. D2013.7 eif-3.F 21004 7.646 0.940 0.968 0.968 0.968 0.977 0.974 0.902 0.949 Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:Q18967]
64. F56F3.1 ifet-1 25772 7.645 0.942 0.944 0.954 0.944 0.973 0.972 0.940 0.976 Translational repressor ifet-1 [Source:UniProtKB/Swiss-Prot;Acc:Q20898]
65. F22B5.9 fars-3 7209 7.645 0.950 0.950 0.949 0.950 0.972 0.976 0.943 0.955 Phenylalanine--tRNA ligase beta subunit [Source:UniProtKB/Swiss-Prot;Acc:Q19713]
66. F59E12.11 sam-4 8179 7.645 0.971 0.945 0.972 0.945 0.952 0.976 0.938 0.946
67. F33D4.7 emc-6 6534 7.644 0.955 0.959 0.970 0.959 0.967 0.977 0.894 0.963 EMC Endoplasmic Membrane protein Complex (yeast EMC) homolog [Source:RefSeq peptide;Acc:NP_501258]
68. C27H5.3 fust-1 6978 7.643 0.968 0.962 0.954 0.962 0.969 0.974 0.918 0.936 FUS/TLS RNA binding protein homolog [Source:RefSeq peptide;Acc:NP_495483]
69. K08F4.2 gtbp-1 25222 7.641 0.960 0.967 0.979 0.967 0.969 0.952 0.889 0.958 ras-Gtpase-activating protein SH3 (Three) domain-Binding Protein [Source:RefSeq peptide;Acc:NP_501842]
70. C27B7.1 spr-2 14958 7.641 0.974 0.951 0.940 0.951 0.970 0.968 0.949 0.938 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
71. Y38A8.3 ulp-2 7403 7.64 0.951 0.955 0.948 0.955 0.980 0.969 0.963 0.919 Ubiquitin-Like Protease [Source:RefSeq peptide;Acc:NP_494914]
72. Y116A8C.42 snr-1 17062 7.64 0.943 0.973 0.967 0.973 0.954 0.950 0.922 0.958 Small nuclear ribonucleoprotein Sm D3 [Source:UniProtKB/Swiss-Prot;Acc:Q17348]
73. R06A4.9 pfs-2 4733 7.639 0.956 0.954 0.942 0.954 0.974 0.982 0.935 0.942 Polyadenylation Factor Subunit homolog [Source:RefSeq peptide;Acc:NP_001293597]
74. F23F1.1 nfyc-1 9983 7.639 0.969 0.967 0.948 0.967 0.965 0.957 0.930 0.936 Nuclear transcription Factor Y, C (gamma) subunit [Source:RefSeq peptide;Acc:NP_493645]
75. T21B10.1 mrpl-50 14595 7.639 0.950 0.977 0.971 0.977 0.951 0.974 0.898 0.941 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_495899]
76. B0464.1 dars-1 12331 7.637 0.928 0.974 0.956 0.974 0.977 0.940 0.944 0.944 Aspartate--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q03577]
77. C52E4.3 snr-4 19308 7.637 0.959 0.980 0.957 0.980 0.983 0.980 0.859 0.939 Probable small nuclear ribonucleoprotein Sm D2 [Source:UniProtKB/Swiss-Prot;Acc:Q18786]
78. R13F6.10 cra-1 11610 7.636 0.932 0.962 0.965 0.962 0.985 0.964 0.914 0.952 N-terminal acetyltransferase B complex subunit NAA25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q21986]
79. W06H3.3 ctps-1 8363 7.636 0.940 0.949 0.969 0.949 0.961 0.975 0.934 0.959 CTP synthase [Source:RefSeq peptide;Acc:NP_507243]
80. Y102A5A.1 cand-1 11808 7.636 0.933 0.962 0.951 0.962 0.960 0.969 0.953 0.946 Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:G5ED41]
81. C18E9.6 tomm-40 13426 7.636 0.936 0.958 0.963 0.958 0.983 0.975 0.951 0.912 Mitochondrial import receptor subunit TOM40 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q18090]
82. Y37E3.15 npp-13 7250 7.636 0.969 0.946 0.961 0.946 0.955 0.961 0.960 0.938 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_001293351]
83. Y40B1B.5 eif-3.J 15061 7.635 0.965 0.970 0.954 0.970 0.977 0.969 0.905 0.925 Eukaryotic Initiation Factor [Source:RefSeq peptide;Acc:NP_493365]
84. Y41D4B.19 npp-8 12992 7.634 0.965 0.958 0.955 0.958 0.955 0.979 0.937 0.927 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_500102]
85. W01G7.3 rpb-11 7826 7.634 0.952 0.967 0.937 0.967 0.964 0.969 0.950 0.928 Probable DNA-directed RNA polymerase II subunit RPB11 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVH6]
86. Y34D9A.1 mrpl-38 5291 7.634 0.962 0.965 0.936 0.965 0.960 0.968 0.945 0.933 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_490808]
87. C26D10.2 hel-1 28697 7.631 0.940 0.966 0.962 0.966 0.960 0.948 0.941 0.948 Spliceosome RNA helicase DDX39B homolog [Source:UniProtKB/Swiss-Prot;Acc:Q18212]
88. T10C6.4 srx-44 8454 7.631 0.976 0.975 0.910 0.975 0.954 0.944 0.936 0.961 Serpentine Receptor, class X [Source:RefSeq peptide;Acc:NP_507023]
89. Y73B6BL.6 sqd-1 41708 7.631 0.942 0.974 0.967 0.974 0.965 0.959 0.939 0.911 homologous to Drosophila SQD (squid) protein [Source:RefSeq peptide;Acc:NP_001023573]
90. C53A5.3 hda-1 18413 7.63 0.971 0.955 0.937 0.955 0.970 0.965 0.935 0.942 Histone deacetylase 1 [Source:UniProtKB/Swiss-Prot;Acc:O17695]
91. F02E9.9 dpt-1 5401 7.63 0.979 0.960 0.983 0.960 0.944 0.957 0.926 0.921 Dipeptidyl Peptidase Three [Source:RefSeq peptide;Acc:NP_001040648]
92. F52C9.7 mog-3 9880 7.629 0.975 0.951 0.938 0.951 0.967 0.960 0.955 0.932 Masculinisation Of Germline [Source:RefSeq peptide;Acc:NP_498134]
93. B0205.11 mrpl-9 9162 7.628 0.913 0.961 0.950 0.961 0.975 0.977 0.952 0.939 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_492810]
94. F53F10.5 npp-11 3378 7.627 0.963 0.960 0.947 0.960 0.963 0.961 0.925 0.948 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491232]
95. F36A2.1 cids-2 4551 7.627 0.970 0.968 0.924 0.968 0.965 0.952 0.946 0.934 pol II C-terminal Interaction Domain Suppressor [Source:RefSeq peptide;Acc:NP_492380]
96. ZC262.8 mrps-18A 3125 7.627 0.952 0.970 0.938 0.970 0.962 0.939 0.937 0.959 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_498835]
97. Y73B6BL.33 hrpf-2 4443 7.626 0.973 0.974 0.967 0.974 0.973 0.938 0.890 0.937 HnRNP F homolog [Source:RefSeq peptide;Acc:NP_001293781]
98. C48E7.3 lpd-2 10330 7.625 0.957 0.976 0.962 0.976 0.950 0.956 0.891 0.957 LiPid Depleted [Source:RefSeq peptide;Acc:NP_491806]
99. C53D5.6 imb-3 28921 7.624 0.948 0.974 0.967 0.974 0.966 0.902 0.955 0.938 IMportin Beta family [Source:RefSeq peptide;Acc:NP_490715]
100. ZK652.1 snr-5 5993 7.624 0.912 0.972 0.961 0.972 0.981 0.980 0.910 0.936 Probable small nuclear ribonucleoprotein F [Source:UniProtKB/Swiss-Prot;Acc:P34659]

There are 2685 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA