C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for R05D11.3

Gene ID Gene Name Reads Transcripts Annotation
R05D11.3 ran-4 15494 R05D11.3 Probable nuclear transport factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q21735]

Genes with expression patterns similar to R05D11.3

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. R05D11.3 ran-4 15494 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Probable nuclear transport factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q21735]
2. C18A3.5 tiar-1 25400 7.785 0.964 0.983 0.981 0.983 0.978 0.984 0.939 0.973 TIA-1/TIAL RNA binding protein homolog [Source:RefSeq peptide;Acc:NP_495121]
3. F08F8.3 kap-1 31437 7.784 0.976 0.976 0.977 0.976 0.980 0.989 0.943 0.967 Kinesin-Associated Protein [Source:RefSeq peptide;Acc:NP_001021246]
4. C15H11.4 dhs-22 21674 7.767 0.975 0.977 0.972 0.977 0.981 0.970 0.940 0.975 DeHydrogenases, Short chain [Source:RefSeq peptide;Acc:NP_506570]
5. C18D11.4 rsp-8 18308 7.761 0.968 0.974 0.977 0.974 0.975 0.963 0.949 0.981 SR Protein (splicing factor) [Source:RefSeq peptide;Acc:NP_001255142]
6. F33D11.11 vpr-1 18001 7.755 0.972 0.989 0.954 0.989 0.975 0.966 0.927 0.983 Major sperm protein [Source:RefSeq peptide;Acc:NP_491704]
7. ZK616.6 perm-3 16186 7.754 0.979 0.980 0.981 0.980 0.983 0.960 0.925 0.966 PERMeable eggshell [Source:RefSeq peptide;Acc:NP_001293836]
8. H19N07.1 erfa-3 19869 7.75 0.963 0.969 0.973 0.969 0.986 0.976 0.932 0.982 Eukaryotic Release FActor homolog [Source:RefSeq peptide;Acc:NP_001256292]
9. K11D12.2 pqn-51 15951 7.743 0.973 0.982 0.979 0.982 0.968 0.970 0.941 0.948 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_504355]
10. Y73B6BL.6 sqd-1 41708 7.734 0.952 0.967 0.973 0.967 0.976 0.976 0.964 0.959 homologous to Drosophila SQD (squid) protein [Source:RefSeq peptide;Acc:NP_001023573]
11. Y111B2A.18 rsp-3 43731 7.731 0.983 0.989 0.969 0.989 0.975 0.961 0.918 0.947 Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]
12. H21P03.1 mbf-1 25586 7.729 0.955 0.959 0.980 0.959 0.980 0.979 0.933 0.984 MBF (multiprotein bridging factor) transcriptional coactivator [Source:RefSeq peptide;Acc:NP_502166]
13. ZK637.3 lnkn-1 16095 7.728 0.965 0.982 0.982 0.982 0.951 0.961 0.935 0.970 Putative protein tag-256 [Source:RefSeq peptide;Acc:NP_498963]
14. F13G3.4 dylt-1 21345 7.724 0.954 0.967 0.976 0.967 0.977 0.978 0.954 0.951 DYnein Light chain (Tctex type) [Source:RefSeq peptide;Acc:NP_492063]
15. K10C3.2 ensa-1 19836 7.722 0.971 0.980 0.943 0.980 0.971 0.962 0.947 0.968 ENdoSulfine Alpha [Source:RefSeq peptide;Acc:NP_492609]
16. Y102A5A.1 cand-1 11808 7.719 0.960 0.980 0.972 0.980 0.970 0.980 0.940 0.937 Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:G5ED41]
17. T12D8.8 hip-1 18283 7.717 0.975 0.969 0.966 0.969 0.973 0.957 0.954 0.954 Hsp-70 Interacting Protein homolog [Source:RefSeq peptide;Acc:NP_499811]
18. F43E2.7 mtch-1 30689 7.714 0.959 0.978 0.972 0.978 0.966 0.966 0.936 0.959 MiTochondrial Carrier Homolog [Source:RefSeq peptide;Acc:NP_871994]
19. ZK1058.4 ccdc-47 8879 7.714 0.981 0.973 0.967 0.973 0.969 0.963 0.948 0.940 CCDC (human Coiled Coil Domain Containing) homolog [Source:RefSeq peptide;Acc:NP_497788]
20. R144.4 wip-1 14168 7.71 0.959 0.972 0.964 0.972 0.960 0.959 0.949 0.975 Wiskott-Aldrich syndrome protein (WASP)-Interacting Protein and gene assignment [Source:RefSeq peptide;Acc:NP_741123]
21. T10F2.4 prp-19 11298 7.708 0.987 0.985 0.973 0.985 0.981 0.936 0.947 0.914 Pre-mRNA-processing factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q10051]
22. F42A6.7 hrp-1 28201 7.707 0.983 0.969 0.985 0.969 0.970 0.944 0.947 0.940 Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q22037]
23. M7.1 let-70 85699 7.705 0.962 0.981 0.984 0.981 0.945 0.939 0.954 0.959 Ubiquitin-conjugating enzyme E2 2 [Source:UniProtKB/Swiss-Prot;Acc:P35129]
24. Y79H2A.6 arx-3 17398 7.704 0.975 0.978 0.976 0.978 0.988 0.946 0.904 0.959 ARp2/3 compleX component [Source:RefSeq peptide;Acc:NP_499570]
25. T17E9.2 nmt-1 8017 7.702 0.971 0.981 0.969 0.981 0.978 0.941 0.933 0.948 Probable glycylpeptide N-tetradecanoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:P46548]
26. ZK742.1 xpo-1 20741 7.702 0.945 0.980 0.981 0.980 0.968 0.965 0.935 0.948 eXPOrtin (nuclear export receptor) [Source:RefSeq peptide;Acc:NP_741567]
27. D1022.1 ubc-6 9722 7.701 0.961 0.959 0.947 0.959 0.976 0.960 0.967 0.972 UBiquitin Conjugating enzyme [Source:RefSeq peptide;Acc:NP_001040755]
28. F28H1.3 aars-2 13537 7.701 0.974 0.970 0.973 0.970 0.964 0.974 0.926 0.950 Alanine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O01541]
29. Y56A3A.20 ccf-1 18463 7.699 0.956 0.960 0.958 0.960 0.972 0.979 0.939 0.975 CCR4-NOT transcription complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q17345]
30. F54C8.5 rheb-1 6358 7.698 0.975 0.974 0.952 0.974 0.934 0.970 0.946 0.973 GTP-binding protein Rheb homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P34443]
31. T04A8.14 emb-5 11746 7.696 0.953 0.983 0.961 0.983 0.987 0.960 0.921 0.948 Suppressor of Ty 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34703]
32. T05H4.6 erfa-1 12542 7.695 0.965 0.944 0.958 0.944 0.980 0.972 0.948 0.984 Eukaryotic peptide chain release factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O16520]
33. E01A2.2 E01A2.2 12356 7.686 0.956 0.971 0.967 0.971 0.957 0.953 0.958 0.953 Serrate RNA effector molecule homolog [Source:UniProtKB/Swiss-Prot;Acc:Q966L5]
34. T26A5.9 dlc-1 59038 7.686 0.987 0.981 0.990 0.981 0.972 0.954 0.889 0.932 Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]
35. T16G1.11 eif-3.K 14014 7.686 0.977 0.959 0.972 0.959 0.980 0.967 0.929 0.943 Eukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/Swiss-Prot;Acc:Q9XUP3]
36. F02E9.9 dpt-1 5401 7.683 0.966 0.973 0.955 0.973 0.956 0.958 0.936 0.966 Dipeptidyl Peptidase Three [Source:RefSeq peptide;Acc:NP_001040648]
37. B0205.7 kin-3 29775 7.683 0.970 0.958 0.978 0.958 0.950 0.958 0.954 0.957 Casein kinase II subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P18334]
38. R07G3.1 cdc-42 35737 7.683 0.980 0.978 0.973 0.978 0.962 0.912 0.939 0.961 Cell division control protein 42 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q05062]
39. T12D8.6 mlc-5 19567 7.683 0.977 0.985 0.979 0.985 0.938 0.949 0.912 0.958 Myosin-2 essential light chain [Source:UniProtKB/Swiss-Prot;Acc:Q9XVI9]
40. Y48A6B.13 spat-2 21773 7.679 0.951 0.957 0.981 0.957 0.956 0.984 0.922 0.971 Suppressor of PAr-Two defect [Source:RefSeq peptide;Acc:NP_001255103]
41. C25D7.8 otub-1 7941 7.677 0.975 0.956 0.968 0.956 0.966 0.963 0.932 0.961 Ubiquitin thioesterase otubain-like [Source:UniProtKB/Swiss-Prot;Acc:Q9XVR6]
42. Y113G7B.23 swsn-1 13766 7.677 0.965 0.968 0.959 0.968 0.963 0.981 0.912 0.961 SWI/SNF nucleosome remodeling complex component [Source:RefSeq peptide;Acc:NP_001256906]
43. F22D6.3 nars-1 18624 7.67 0.973 0.970 0.970 0.970 0.980 0.957 0.895 0.955 Asparagine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q19722]
44. Y116A8C.35 uaf-2 13808 7.667 0.972 0.979 0.978 0.979 0.967 0.943 0.930 0.919 U2AF splicing factor [Source:RefSeq peptide;Acc:NP_503036]
45. C30C11.4 hsp-110 27892 7.666 0.975 0.966 0.978 0.966 0.926 0.983 0.930 0.942 Heat Shock Protein [Source:RefSeq peptide;Acc:NP_498868]
46. K08E7.1 eak-7 18960 7.663 0.977 0.984 0.960 0.984 0.968 0.961 0.881 0.948 Enhancer of AKt-1 null [Source:RefSeq peptide;Acc:NP_502405]
47. F26F4.10 rars-1 9971 7.663 0.960 0.958 0.977 0.958 0.976 0.950 0.940 0.944 Probable arginine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q19825]
48. F41E6.9 vps-60 4469 7.662 0.967 0.964 0.967 0.964 0.948 0.961 0.926 0.965 related to yeast Vacuolar Protein Sorting factor [Source:RefSeq peptide;Acc:NP_505219]
49. C33H5.12 rsp-6 23342 7.659 0.971 0.973 0.977 0.973 0.962 0.939 0.910 0.954 Probable splicing factor, arginine/serine-rich 6 [Source:UniProtKB/Swiss-Prot;Acc:Q18409]
50. F10D11.1 sod-2 7480 7.658 0.970 0.977 0.971 0.977 0.960 0.967 0.884 0.952 Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P31161]
51. F26H11.2 nurf-1 13015 7.657 0.970 0.977 0.969 0.977 0.968 0.980 0.945 0.871 Nucleosome-remodeling factor subunit NURF301-like [Source:UniProtKB/Swiss-Prot;Acc:Q6BER5]
52. M106.4 gmps-1 12232 7.656 0.956 0.970 0.963 0.970 0.981 0.966 0.915 0.935 Probable GMP synthase [glutamine-hydrolyzing] [Source:UniProtKB/Swiss-Prot;Acc:Q09580]
53. C53A5.3 hda-1 18413 7.656 0.968 0.977 0.951 0.977 0.959 0.968 0.913 0.943 Histone deacetylase 1 [Source:UniProtKB/Swiss-Prot;Acc:O17695]
54. Y57E12AM.1 Y57E12AM.1 10510 7.654 0.971 0.952 0.964 0.952 0.954 0.946 0.947 0.968 Transmembrane protein 258 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q965T1]
55. R07G3.5 pgam-5 11646 7.654 0.977 0.978 0.982 0.978 0.944 0.952 0.901 0.942 Serine/threonine-protein phosphatase Pgam5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09422]
56. C47D12.6 tars-1 23488 7.654 0.975 0.970 0.974 0.970 0.980 0.945 0.886 0.954 Threonine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P52709]
57. T08B2.9 fars-1 12650 7.654 0.957 0.959 0.972 0.959 0.938 0.960 0.926 0.983 Phenylalanyl Amino-acyl tRNA Synthetase [Source:RefSeq peptide;Acc:NP_491792]
58. F39B2.11 mtx-1 8526 7.653 0.969 0.980 0.974 0.980 0.954 0.954 0.922 0.920 Metaxin-1 homolog [Source:UniProtKB/Swiss-Prot;Acc:O45503]
59. Y54E10A.9 vbh-1 28746 7.653 0.965 0.956 0.979 0.956 0.973 0.942 0.928 0.954 Vasa-and Belle-like Helicase [Source:RefSeq peptide;Acc:NP_491113]
60. F39B2.10 dnj-12 35162 7.651 0.970 0.973 0.980 0.973 0.936 0.942 0.914 0.963 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_493570]
61. Y39A1C.3 cey-4 50694 7.649 0.958 0.943 0.961 0.943 0.983 0.970 0.935 0.956 C. Elegans Y-box [Source:RefSeq peptide;Acc:NP_499393]
62. B0464.1 dars-1 12331 7.648 0.938 0.958 0.969 0.958 0.978 0.942 0.939 0.966 Aspartate--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q03577]
63. T10C6.4 srx-44 8454 7.648 0.979 0.978 0.942 0.978 0.964 0.925 0.945 0.937 Serpentine Receptor, class X [Source:RefSeq peptide;Acc:NP_507023]
64. H17B01.4 emc-1 9037 7.647 0.938 0.978 0.952 0.978 0.966 0.969 0.899 0.967 EMC Endoplasmic Membrane protein Complex (yeast EMC) homolog [Source:RefSeq peptide;Acc:NP_493980]
65. Y54E5A.4 npp-4 6288 7.647 0.964 0.982 0.970 0.982 0.972 0.925 0.918 0.934 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_493552]
66. ZK863.6 dpy-30 16177 7.645 0.982 0.982 0.976 0.982 0.935 0.959 0.862 0.967 Dosage compensation protein dpy-30 [Source:UniProtKB/Swiss-Prot;Acc:Q10661]
67. C09G12.9 tsg-101 9451 7.642 0.979 0.970 0.953 0.970 0.950 0.932 0.926 0.962 Tumor Susceptibility Gene homolog [Source:RefSeq peptide;Acc:NP_500364]
68. Y38A8.2 pbs-3 18117 7.639 0.981 0.967 0.959 0.967 0.934 0.956 0.935 0.940 Proteasome subunit beta type-3 [Source:UniProtKB/Swiss-Prot;Acc:Q23237]
69. R06A4.9 pfs-2 4733 7.638 0.956 0.960 0.959 0.960 0.966 0.960 0.935 0.942 Polyadenylation Factor Subunit homolog [Source:RefSeq peptide;Acc:NP_001293597]
70. F23B12.6 fntb-1 4392 7.638 0.955 0.967 0.953 0.967 0.955 0.962 0.906 0.973 FarNesylTransferase, Beta subunit [Source:RefSeq peptide;Acc:NP_506580]
71. F58D5.1 hrp-2 17211 7.637 0.968 0.964 0.964 0.964 0.973 0.939 0.918 0.947 human HnRNP A1 homolog [Source:RefSeq peptide;Acc:NP_493049]
72. F40G9.3 ubc-20 16785 7.636 0.976 0.979 0.983 0.979 0.937 0.935 0.913 0.934 UBiquitin Conjugating enzyme [Source:RefSeq peptide;Acc:NP_497174]
73. Y40B1B.5 eif-3.J 15061 7.636 0.969 0.957 0.982 0.957 0.979 0.960 0.882 0.950 Eukaryotic Initiation Factor [Source:RefSeq peptide;Acc:NP_493365]
74. F25D1.1 ppm-1 16992 7.635 0.967 0.975 0.974 0.975 0.949 0.951 0.937 0.907 Protein Phosphatase, Mg2+/Mn2+ dependent [Source:RefSeq peptide;Acc:NP_001122929]
75. C08B11.5 sap-49 10553 7.633 0.979 0.977 0.979 0.977 0.968 0.940 0.930 0.883 Splicing factor 3B subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09442]
76. C39E9.14 dli-1 5650 7.633 0.933 0.962 0.979 0.962 0.953 0.958 0.903 0.983 Dynein Light Intermediate chain [Source:RefSeq peptide;Acc:NP_502518]
77. F39B2.2 uev-1 13597 7.632 0.977 0.948 0.969 0.948 0.956 0.937 0.938 0.959 Ubiquitin-conjugating enzyme E2 variant 1 [Source:UniProtKB/Swiss-Prot;Acc:O45495]
78. T24F1.1 raga-1 16171 7.631 0.961 0.974 0.980 0.974 0.953 0.942 0.886 0.961 RAs-related GTP-binding protein A [Source:RefSeq peptide;Acc:NP_496415]
79. W04D2.5 mrps-11 5757 7.63 0.973 0.956 0.968 0.956 0.957 0.928 0.939 0.953 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_506131]
80. T05F1.1 nra-2 7101 7.627 0.967 0.976 0.942 0.976 0.941 0.955 0.935 0.935 Nicalin [Source:RefSeq peptide;Acc:NP_492553]
81. C06H2.6 lmtr-3 11122 7.627 0.945 0.972 0.941 0.972 0.980 0.957 0.913 0.947 Late endosomal/lysosomal adaptor, Mapk (MAPK) and mToR (MTOR) activator homolog [Source:RefSeq peptide;Acc:NP_741627]
82. F32A5.7 lsm-4 3785 7.627 0.983 0.979 0.986 0.979 0.954 0.930 0.918 0.898 Probable U6 snRNA-associated Sm-like protein LSm4 [Source:UniProtKB/Swiss-Prot;Acc:Q19952]
83. F38H4.9 let-92 25368 7.627 0.987 0.980 0.968 0.980 0.949 0.918 0.875 0.970 Serine/threonine-protein phosphatase [Source:RefSeq peptide;Acc:NP_502247]
84. K05C4.11 sol-2 16560 7.626 0.945 0.954 0.970 0.954 0.967 0.952 0.909 0.975 Suppressor Of Lurcher movement defect [Source:RefSeq peptide;Acc:NP_493560]
85. F57B9.2 let-711 8592 7.625 0.970 0.966 0.959 0.966 0.982 0.961 0.905 0.916 NTL-1a; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q20937]
86. F36A2.1 cids-2 4551 7.625 0.964 0.973 0.961 0.973 0.966 0.945 0.916 0.927 pol II C-terminal Interaction Domain Suppressor [Source:RefSeq peptide;Acc:NP_492380]
87. F37E3.1 ncbp-1 5649 7.625 0.948 0.982 0.949 0.982 0.962 0.929 0.916 0.957 Nuclear cap-binding protein subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O01763]
88. C50C3.6 prp-8 19582 7.623 0.941 0.960 0.965 0.960 0.972 0.960 0.922 0.943 Pre-mRNA-splicing factor 8 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34369]
89. CD4.6 pas-6 18332 7.622 0.977 0.989 0.963 0.989 0.964 0.901 0.933 0.906 Proteasome subunit alpha type-1 [Source:UniProtKB/Swiss-Prot;Acc:O44156]
90. C52E4.6 cyl-1 6405 7.621 0.973 0.974 0.929 0.974 0.945 0.943 0.944 0.939 CYclin L [Source:RefSeq peptide;Acc:NP_506007]
91. T09B4.10 chn-1 5327 7.621 0.960 0.953 0.948 0.953 0.924 0.972 0.948 0.963 C-term of Hsp70-iNteracting protein (CHIP family) [Source:RefSeq peptide;Acc:NP_491781]
92. T19B4.2 npp-7 13073 7.62 0.975 0.971 0.972 0.971 0.972 0.911 0.897 0.951 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491665]
93. K08D12.1 pbs-1 21677 7.619 0.985 0.982 0.965 0.982 0.953 0.924 0.884 0.944 Proteasome subunit beta type [Source:RefSeq peptide;Acc:NP_500125]
94. B0035.3 B0035.3 4118 7.619 0.957 0.962 0.962 0.962 0.967 0.966 0.910 0.933
95. T27F7.3 eif-1 28176 7.618 0.947 0.941 0.967 0.941 0.962 0.948 0.934 0.978 Eukaryotic Initiation Factor [Source:RefSeq peptide;Acc:NP_001254096]
96. ZK686.4 snu-23 9040 7.618 0.974 0.969 0.953 0.969 0.962 0.935 0.889 0.967 Putative zinc finger protein ZK686.4 [Source:RefSeq peptide;Acc:NP_498692]
97. T23H2.1 npp-12 12425 7.617 0.954 0.975 0.978 0.975 0.967 0.932 0.915 0.921 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491855]
98. K01G5.4 ran-1 32379 7.616 0.976 0.972 0.978 0.972 0.969 0.945 0.878 0.926 GTP-binding nuclear protein ran-1 [Source:UniProtKB/Swiss-Prot;Acc:O17915]
99. B0464.7 baf-1 10161 7.616 0.979 0.972 0.943 0.972 0.957 0.963 0.922 0.908 Barrier-to-autointegration factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q03565]
100. C28H8.9 dpff-1 8684 7.615 0.958 0.978 0.945 0.978 0.975 0.950 0.920 0.911 Zinc finger protein dpff-1 [Source:UniProtKB/Swiss-Prot;Acc:Q09477]

There are 3006 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA