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Results for Y54E5B.3

Gene ID Gene Name Reads Transcripts Annotation
Y54E5B.3 let-49 2437 Y54E5B.3a, Y54E5B.3b Mediator of RNA polymerase II transcription subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q95Q17]

Genes with expression patterns similar to Y54E5B.3

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. Y54E5B.3 let-49 2437 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Mediator of RNA polymerase II transcription subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q95Q17]
2. T10C6.4 srx-44 8454 7.71 0.977 0.966 0.969 0.966 0.955 0.981 0.965 0.931 Serpentine Receptor, class X [Source:RefSeq peptide;Acc:NP_507023]
3. C36B1.3 rpb-3 4442 7.708 0.970 0.960 0.967 0.960 0.961 0.955 0.960 0.975 RNA Polymerase II (B) subunit [Source:RefSeq peptide;Acc:NP_492361]
4. C52E4.6 cyl-1 6405 7.684 0.973 0.969 0.955 0.969 0.974 0.963 0.940 0.941 CYclin L [Source:RefSeq peptide;Acc:NP_506007]
5. C09G4.3 cks-1 17852 7.678 0.957 0.966 0.950 0.966 0.971 0.959 0.950 0.959 Cyclin-dependent kinases regulatory subunit [Source:UniProtKB/Swiss-Prot;Acc:Q17868]
6. C27B7.1 spr-2 14958 7.678 0.939 0.979 0.978 0.979 0.960 0.951 0.948 0.944 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
7. C02B10.5 C02B10.5 9171 7.676 0.981 0.968 0.960 0.968 0.937 0.953 0.949 0.960
8. K11D12.2 pqn-51 15951 7.676 0.973 0.976 0.964 0.976 0.967 0.960 0.951 0.909 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_504355]
9. Y54E5A.4 npp-4 6288 7.669 0.974 0.965 0.966 0.965 0.948 0.962 0.954 0.935 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_493552]
10. ZK616.6 perm-3 16186 7.669 0.956 0.964 0.964 0.964 0.963 0.973 0.943 0.942 PERMeable eggshell [Source:RefSeq peptide;Acc:NP_001293836]
11. D1054.14 prp-38 6504 7.668 0.974 0.966 0.968 0.966 0.960 0.955 0.904 0.975 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_505762]
12. T06A10.4 lsy-13 7631 7.668 0.957 0.970 0.953 0.970 0.965 0.947 0.925 0.981
13. F56F3.1 ifet-1 25772 7.666 0.971 0.967 0.960 0.967 0.967 0.952 0.958 0.924 Translational repressor ifet-1 [Source:UniProtKB/Swiss-Prot;Acc:Q20898]
14. C05C8.6 hpo-9 8263 7.666 0.955 0.975 0.967 0.975 0.973 0.942 0.945 0.934
15. R02D3.5 fnta-1 5258 7.665 0.972 0.977 0.956 0.977 0.935 0.965 0.920 0.963 FarNesylTransferase, Alpha subunit [Source:RefSeq peptide;Acc:NP_499882]
16. F22D6.3 nars-1 18624 7.662 0.977 0.966 0.957 0.966 0.965 0.953 0.915 0.963 Asparagine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q19722]
17. Y54E2A.3 tac-1 6308 7.655 0.957 0.968 0.948 0.968 0.961 0.968 0.938 0.947 TACC (transforming acid coiled coil) protein family [Source:RefSeq peptide;Acc:NP_497059]
18. W01G7.3 rpb-11 7826 7.655 0.986 0.951 0.969 0.951 0.967 0.944 0.960 0.927 Probable DNA-directed RNA polymerase II subunit RPB11 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVH6]
19. Y73F8A.34 tag-349 7966 7.649 0.957 0.968 0.961 0.968 0.928 0.948 0.938 0.981
20. C25D7.8 otub-1 7941 7.647 0.979 0.971 0.962 0.971 0.965 0.958 0.936 0.905 Ubiquitin thioesterase otubain-like [Source:UniProtKB/Swiss-Prot;Acc:Q9XVR6]
21. T12D8.3 acbp-5 6816 7.647 0.951 0.973 0.954 0.973 0.962 0.969 0.943 0.922 Acyl-Coenzyme A Binding Protein [Source:RefSeq peptide;Acc:NP_499817]
22. Y113G7B.23 swsn-1 13766 7.647 0.964 0.973 0.966 0.973 0.935 0.976 0.909 0.951 SWI/SNF nucleosome remodeling complex component [Source:RefSeq peptide;Acc:NP_001256906]
23. F57B10.11 bag-1 3395 7.645 0.963 0.954 0.966 0.954 0.951 0.972 0.956 0.929 BAG family molecular chaperone regulator 1 [Source:UniProtKB/Swiss-Prot;Acc:O44739]
24. F58A4.3 hcp-3 8787 7.644 0.983 0.965 0.962 0.965 0.971 0.936 0.936 0.926 Histone H3-like centromeric protein hcp-3 [Source:UniProtKB/Swiss-Prot;Acc:P34470]
25. Y56A3A.20 ccf-1 18463 7.641 0.969 0.972 0.963 0.972 0.930 0.950 0.945 0.940 CCR4-NOT transcription complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q17345]
26. F32H2.4 thoc-3 3861 7.64 0.947 0.980 0.945 0.980 0.968 0.963 0.924 0.933 THO Complex (transcription factor/nuclear export) subunit [Source:RefSeq peptide;Acc:NP_492416]
27. C08B11.5 sap-49 10553 7.637 0.963 0.964 0.948 0.964 0.975 0.956 0.960 0.907 Splicing factor 3B subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09442]
28. B0035.6 B0035.6 7327 7.632 0.974 0.982 0.931 0.982 0.954 0.972 0.886 0.951
29. Y43F4B.4 npp-18 4780 7.63 0.967 0.978 0.947 0.978 0.954 0.944 0.944 0.918 Nucleoporin SEH1 [Source:UniProtKB/Swiss-Prot;Acc:O45933]
30. T10F2.4 prp-19 11298 7.63 0.975 0.958 0.964 0.958 0.957 0.949 0.953 0.916 Pre-mRNA-processing factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q10051]
31. Y111B2A.18 rsp-3 43731 7.629 0.965 0.955 0.959 0.955 0.973 0.929 0.951 0.942 Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]
32. C39E9.13 rfc-3 9443 7.629 0.956 0.973 0.957 0.973 0.968 0.881 0.960 0.961 RFC (DNA replication factor) family [Source:RefSeq peptide;Acc:NP_502517]
33. Y38A8.3 ulp-2 7403 7.629 0.957 0.982 0.967 0.982 0.958 0.934 0.903 0.946 Ubiquitin-Like Protease [Source:RefSeq peptide;Acc:NP_494914]
34. K10C3.2 ensa-1 19836 7.629 0.965 0.968 0.956 0.968 0.949 0.947 0.927 0.949 ENdoSulfine Alpha [Source:RefSeq peptide;Acc:NP_492609]
35. F10G8.3 rae-1 7542 7.628 0.975 0.953 0.977 0.953 0.967 0.947 0.891 0.965 mRNA export factor rae-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93454]
36. T04A8.14 emb-5 11746 7.625 0.940 0.975 0.965 0.975 0.945 0.967 0.911 0.947 Suppressor of Ty 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34703]
37. R12C12.2 ran-5 14517 7.624 0.983 0.977 0.959 0.977 0.957 0.932 0.913 0.926 associated with RAN (nuclear import/export) function [Source:RefSeq peptide;Acc:NP_495208]
38. F54C8.5 rheb-1 6358 7.624 0.956 0.955 0.964 0.955 0.975 0.971 0.940 0.908 GTP-binding protein Rheb homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P34443]
39. T08B2.9 fars-1 12650 7.624 0.965 0.957 0.933 0.957 0.972 0.967 0.943 0.930 Phenylalanyl Amino-acyl tRNA Synthetase [Source:RefSeq peptide;Acc:NP_491792]
40. K01G5.4 ran-1 32379 7.623 0.970 0.967 0.960 0.967 0.961 0.928 0.916 0.954 GTP-binding nuclear protein ran-1 [Source:UniProtKB/Swiss-Prot;Acc:O17915]
41. T17E9.2 nmt-1 8017 7.623 0.962 0.958 0.938 0.958 0.952 0.965 0.954 0.936 Probable glycylpeptide N-tetradecanoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:P46548]
42. B0464.9 B0464.9 2997 7.622 0.898 0.973 0.974 0.973 0.967 0.932 0.938 0.967 Probable protein phosphatase methylesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BIB3]
43. F28B3.7 him-1 18274 7.619 0.931 0.956 0.955 0.956 0.942 0.965 0.931 0.983 Structural maintenance of chromosomes protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O01789]
44. T24D1.4 tag-179 3757 7.619 0.957 0.959 0.954 0.959 0.963 0.956 0.909 0.962
45. Y34D9A.1 mrpl-38 5291 7.619 0.966 0.959 0.943 0.959 0.966 0.949 0.922 0.955 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_490808]
46. D2089.1 rsp-7 11057 7.618 0.949 0.975 0.966 0.975 0.927 0.965 0.883 0.978 Probable splicing factor, arginine/serine-rich 7 [Source:UniProtKB/Swiss-Prot;Acc:O01159]
47. ZK1098.8 mut-7 4940 7.616 0.937 0.972 0.978 0.972 0.950 0.936 0.916 0.955 Exonuclease mut-7 [Source:UniProtKB/Swiss-Prot;Acc:P34607]
48. T20G5.11 rde-4 3966 7.616 0.964 0.962 0.960 0.962 0.950 0.938 0.937 0.943 RNA interference promoting factor; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EBF5]
49. W02B12.3 rsp-1 9235 7.616 0.975 0.949 0.978 0.949 0.946 0.927 0.922 0.970 Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121]
50. Y97E10AR.5 rpb-9 3598 7.615 0.944 0.954 0.942 0.954 0.951 0.964 0.942 0.964 DNA-directed RNA polymerase subunit [Source:RefSeq peptide;Acc:NP_505062]
51. F53F10.5 npp-11 3378 7.615 0.963 0.964 0.955 0.964 0.982 0.923 0.968 0.896 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491232]
52. W02F12.6 sna-1 7338 7.615 0.969 0.970 0.963 0.970 0.976 0.914 0.949 0.904 Small Nuclear RNA (snRNA) Associated protein [Source:RefSeq peptide;Acc:NP_504701]
53. F23F1.1 nfyc-1 9983 7.612 0.949 0.966 0.962 0.966 0.947 0.931 0.927 0.964 Nuclear transcription Factor Y, C (gamma) subunit [Source:RefSeq peptide;Acc:NP_493645]
54. F56D1.7 daz-1 23684 7.608 0.964 0.956 0.970 0.956 0.956 0.929 0.935 0.942 DAZ protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q20870]
55. F33D4.7 emc-6 6534 7.608 0.978 0.960 0.959 0.960 0.946 0.956 0.935 0.914 EMC Endoplasmic Membrane protein Complex (yeast EMC) homolog [Source:RefSeq peptide;Acc:NP_501258]
56. K03B4.2 K03B4.2 21796 7.607 0.964 0.976 0.947 0.976 0.921 0.970 0.932 0.921
57. R09B3.4 ubc-12 7667 7.607 0.959 0.971 0.935 0.971 0.937 0.950 0.936 0.948 NEDD8-conjugating enzyme ubc-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVK5]
58. F23B12.6 fntb-1 4392 7.607 0.963 0.966 0.984 0.966 0.955 0.952 0.912 0.909 FarNesylTransferase, Beta subunit [Source:RefSeq peptide;Acc:NP_506580]
59. F33H1.4 F33H1.4 2447 7.606 0.983 0.952 0.961 0.952 0.958 0.947 0.965 0.888
60. C15H11.4 dhs-22 21674 7.606 0.969 0.956 0.974 0.956 0.955 0.958 0.944 0.894 DeHydrogenases, Short chain [Source:RefSeq peptide;Acc:NP_506570]
61. T12E12.4 drp-1 7694 7.606 0.963 0.962 0.943 0.962 0.940 0.962 0.940 0.934 Dynamin-Related Protein [Source:RefSeq peptide;Acc:NP_001023375]
62. W04D2.5 mrps-11 5757 7.605 0.966 0.955 0.945 0.955 0.963 0.924 0.952 0.945 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_506131]
63. R07G3.5 pgam-5 11646 7.605 0.955 0.971 0.962 0.971 0.918 0.955 0.920 0.953 Serine/threonine-protein phosphatase Pgam5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09422]
64. F31E3.3 rfc-4 3828 7.603 0.968 0.973 0.947 0.973 0.978 0.906 0.936 0.922 Replication factor C subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:P53016]
65. Y65B4BL.2 deps-1 18277 7.602 0.928 0.968 0.956 0.968 0.974 0.931 0.919 0.958
66. C28H8.9 dpff-1 8684 7.6 0.971 0.977 0.943 0.977 0.950 0.944 0.943 0.895 Zinc finger protein dpff-1 [Source:UniProtKB/Swiss-Prot;Acc:Q09477]
67. T05H4.6 erfa-1 12542 7.599 0.955 0.944 0.937 0.944 0.947 0.972 0.966 0.934 Eukaryotic peptide chain release factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O16520]
68. Y17G7A.1 hmg-12 29989 7.599 0.974 0.971 0.971 0.971 0.938 0.903 0.936 0.935 HMG [Source:RefSeq peptide;Acc:NP_496544]
69. F28H1.3 aars-2 13537 7.599 0.951 0.946 0.970 0.946 0.960 0.946 0.938 0.942 Alanine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O01541]
70. T09A5.7 T09A5.7 5907 7.598 0.921 0.958 0.910 0.958 0.964 0.964 0.969 0.954
71. Y47G6A.20 rnp-6 5542 7.598 0.945 0.982 0.961 0.982 0.948 0.965 0.879 0.936 RNP (RRM RNA binding domain) containing [Source:RefSeq peptide;Acc:NP_491177]
72. C47B2.4 pbs-2 19805 7.597 0.978 0.962 0.974 0.962 0.912 0.947 0.918 0.944 Proteasome subunit beta type [Source:RefSeq peptide;Acc:NP_493271]
73. F42A6.7 hrp-1 28201 7.596 0.972 0.948 0.965 0.948 0.970 0.925 0.937 0.931 Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q22037]
74. Y71D11A.2 smr-1 4976 7.596 0.943 0.952 0.944 0.952 0.959 0.974 0.942 0.930 SMN (Survival of Motor Neuron protein) Related [Source:RefSeq peptide;Acc:NP_001022932]
75. T04A8.10 sel-13 3109 7.594 0.927 0.968 0.946 0.968 0.972 0.978 0.920 0.915 Suppressor/Enhancer of Lin-12 [Source:RefSeq peptide;Acc:NP_497963]
76. C24G6.1 syp-2 2843 7.594 0.972 0.947 0.948 0.947 0.970 0.948 0.902 0.960
77. F43G9.9 cpn-1 14505 7.594 0.976 0.972 0.980 0.972 0.942 0.892 0.936 0.924 CalPoNin [Source:RefSeq peptide;Acc:NP_492339]
78. Y110A7A.8 prp-31 4436 7.594 0.956 0.968 0.944 0.968 0.959 0.959 0.939 0.901 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_491527]
79. C18G1.4 pgl-3 5291 7.593 0.962 0.958 0.963 0.958 0.943 0.937 0.905 0.967 PGL-3; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EBV6]
80. T16G1.11 eif-3.K 14014 7.593 0.978 0.956 0.930 0.956 0.949 0.944 0.937 0.943 Eukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/Swiss-Prot;Acc:Q9XUP3]
81. B0025.2 csn-2 5205 7.593 0.948 0.961 0.947 0.961 0.968 0.920 0.955 0.933 COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O01422]
82. F39H11.5 pbs-7 13631 7.589 0.966 0.975 0.982 0.975 0.896 0.948 0.924 0.923 Proteasome Beta Subunit [Source:RefSeq peptide;Acc:NP_492354]
83. Y39G10AR.7 ekl-7 7072 7.589 0.946 0.963 0.964 0.963 0.964 0.917 0.918 0.954
84. C09G12.9 tsg-101 9451 7.588 0.990 0.976 0.963 0.976 0.941 0.915 0.912 0.915 Tumor Susceptibility Gene homolog [Source:RefSeq peptide;Acc:NP_500364]
85. Y71F9B.16 dnj-30 4262 7.588 0.970 0.966 0.959 0.966 0.927 0.943 0.894 0.963 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_001293377]
86. R144.4 wip-1 14168 7.585 0.939 0.974 0.958 0.974 0.932 0.946 0.931 0.931 Wiskott-Aldrich syndrome protein (WASP)-Interacting Protein and gene assignment [Source:RefSeq peptide;Acc:NP_741123]
87. F46B6.3 smg-4 4959 7.584 0.955 0.975 0.961 0.975 0.919 0.945 0.898 0.956 Suppressor with Morphological effect on Genitalia [Source:RefSeq peptide;Acc:NP_741600]
88. C48E7.3 lpd-2 10330 7.582 0.952 0.975 0.965 0.975 0.922 0.954 0.916 0.923 LiPid Depleted [Source:RefSeq peptide;Acc:NP_491806]
89. ZK1127.4 ZK1127.4 3088 7.581 0.947 0.946 0.963 0.946 0.958 0.952 0.925 0.944 Protein BCCIP homolog [Source:UniProtKB/Swiss-Prot;Acc:Q23402]
90. F13G3.4 dylt-1 21345 7.58 0.932 0.945 0.956 0.945 0.971 0.957 0.955 0.919 DYnein Light chain (Tctex type) [Source:RefSeq peptide;Acc:NP_492063]
91. T09B4.10 chn-1 5327 7.579 0.971 0.976 0.954 0.976 0.944 0.950 0.928 0.880 C-term of Hsp70-iNteracting protein (CHIP family) [Source:RefSeq peptide;Acc:NP_491781]
92. Y38A8.2 pbs-3 18117 7.578 0.971 0.971 0.972 0.971 0.906 0.955 0.895 0.937 Proteasome subunit beta type-3 [Source:UniProtKB/Swiss-Prot;Acc:Q23237]
93. T19B4.2 npp-7 13073 7.578 0.952 0.973 0.950 0.973 0.950 0.951 0.913 0.916 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491665]
94. Y39G10AR.9 Y39G10AR.9 3972 7.578 0.934 0.970 0.924 0.970 0.948 0.964 0.950 0.918
95. F36A2.1 cids-2 4551 7.577 0.927 0.972 0.977 0.972 0.932 0.936 0.926 0.935 pol II C-terminal Interaction Domain Suppressor [Source:RefSeq peptide;Acc:NP_492380]
96. T21D12.3 pqbp-1.1 5755 7.577 0.947 0.940 0.967 0.940 0.942 0.953 0.966 0.922 PQBP1 (polyglutamine tract-binding neurodegeneration protein) homolog [Source:RefSeq peptide;Acc:NP_499890]
97. F58B6.3 par-2 3914 7.577 0.960 0.977 0.936 0.977 0.906 0.934 0.938 0.949
98. D1081.9 D1081.9 3792 7.576 0.937 0.971 0.978 0.971 0.928 0.941 0.906 0.944
99. T19A6.3 nepr-1 6606 7.575 0.977 0.943 0.974 0.943 0.936 0.951 0.947 0.904 Nuclear envelope phosphatase-regulatory subunit 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9XXN3]
100. C18D11.4 rsp-8 18308 7.574 0.940 0.943 0.950 0.943 0.951 0.957 0.942 0.948 SR Protein (splicing factor) [Source:RefSeq peptide;Acc:NP_001255142]

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Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA