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Results for R09B3.4

Gene ID Gene Name Reads Transcripts Annotation
R09B3.4 ubc-12 7667 R09B3.4 NEDD8-conjugating enzyme ubc-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVK5]

Genes with expression patterns similar to R09B3.4

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. R09B3.4 ubc-12 7667 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 NEDD8-conjugating enzyme ubc-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVK5]
2. T10C6.4 srx-44 8454 7.687 0.972 0.972 0.961 0.972 0.970 0.964 0.964 0.912 Serpentine Receptor, class X [Source:RefSeq peptide;Acc:NP_507023]
3. B0495.6 moa-2 6366 7.682 0.914 0.970 0.972 0.970 0.959 0.972 0.952 0.973
4. R144.4 wip-1 14168 7.664 0.930 0.978 0.954 0.978 0.961 0.933 0.961 0.969 Wiskott-Aldrich syndrome protein (WASP)-Interacting Protein and gene assignment [Source:RefSeq peptide;Acc:NP_741123]
5. C27B7.1 spr-2 14958 7.654 0.927 0.978 0.962 0.978 0.950 0.971 0.947 0.941 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
6. Y73F8A.34 tag-349 7966 7.64 0.927 0.975 0.967 0.975 0.965 0.938 0.934 0.959
7. F54C8.5 rheb-1 6358 7.633 0.960 0.967 0.965 0.967 0.952 0.955 0.946 0.921 GTP-binding protein Rheb homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P34443]
8. ZK686.4 snu-23 9040 7.631 0.943 0.981 0.965 0.981 0.940 0.975 0.889 0.957 Putative zinc finger protein ZK686.4 [Source:RefSeq peptide;Acc:NP_498692]
9. T10F2.4 prp-19 11298 7.627 0.963 0.952 0.935 0.952 0.966 0.967 0.969 0.923 Pre-mRNA-processing factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q10051]
10. ZK858.1 gld-4 14162 7.621 0.960 0.963 0.985 0.963 0.955 0.963 0.907 0.925 Poly(A) RNA polymerase gld-4 [Source:UniProtKB/Swiss-Prot;Acc:G5EFL0]
11. Y56A3A.20 ccf-1 18463 7.617 0.961 0.963 0.906 0.963 0.963 0.948 0.950 0.963 CCR4-NOT transcription complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q17345]
12. W02F12.6 sna-1 7338 7.614 0.941 0.980 0.963 0.980 0.936 0.938 0.925 0.951 Small Nuclear RNA (snRNA) Associated protein [Source:RefSeq peptide;Acc:NP_504701]
13. F10G8.3 rae-1 7542 7.612 0.948 0.965 0.926 0.965 0.966 0.963 0.939 0.940 mRNA export factor rae-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93454]
14. Y54E2A.3 tac-1 6308 7.611 0.941 0.968 0.937 0.968 0.952 0.975 0.929 0.941 TACC (transforming acid coiled coil) protein family [Source:RefSeq peptide;Acc:NP_497059]
15. K10C3.2 ensa-1 19836 7.607 0.928 0.970 0.945 0.970 0.953 0.940 0.949 0.952 ENdoSulfine Alpha [Source:RefSeq peptide;Acc:NP_492609]
16. Y54E5B.3 let-49 2437 7.607 0.959 0.971 0.935 0.971 0.937 0.950 0.936 0.948 Mediator of RNA polymerase II transcription subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q95Q17]
17. Y38A8.2 pbs-3 18117 7.605 0.963 0.983 0.934 0.983 0.956 0.924 0.939 0.923 Proteasome subunit beta type-3 [Source:UniProtKB/Swiss-Prot;Acc:Q23237]
18. F58A4.3 hcp-3 8787 7.605 0.966 0.958 0.971 0.958 0.949 0.956 0.919 0.928 Histone H3-like centromeric protein hcp-3 [Source:UniProtKB/Swiss-Prot;Acc:P34470]
19. W01G7.3 rpb-11 7826 7.604 0.943 0.962 0.969 0.962 0.956 0.945 0.930 0.937 Probable DNA-directed RNA polymerase II subunit RPB11 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVH6]
20. C25D7.8 otub-1 7941 7.604 0.943 0.978 0.943 0.978 0.944 0.952 0.950 0.916 Ubiquitin thioesterase otubain-like [Source:UniProtKB/Swiss-Prot;Acc:Q9XVR6]
21. R05D11.3 ran-4 15494 7.603 0.958 0.963 0.912 0.963 0.951 0.935 0.977 0.944 Probable nuclear transport factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q21735]
22. Y102A5A.1 cand-1 11808 7.602 0.957 0.969 0.890 0.969 0.949 0.958 0.966 0.944 Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:G5ED41]
23. Y113G7B.23 swsn-1 13766 7.601 0.914 0.976 0.921 0.976 0.964 0.954 0.929 0.967 SWI/SNF nucleosome remodeling complex component [Source:RefSeq peptide;Acc:NP_001256906]
24. Y54E5A.4 npp-4 6288 7.598 0.954 0.961 0.929 0.961 0.931 0.968 0.943 0.951 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_493552]
25. C15H11.4 dhs-22 21674 7.593 0.952 0.975 0.928 0.975 0.958 0.915 0.951 0.939 DeHydrogenases, Short chain [Source:RefSeq peptide;Acc:NP_506570]
26. T12D8.3 acbp-5 6816 7.59 0.943 0.975 0.963 0.975 0.952 0.949 0.937 0.896 Acyl-Coenzyme A Binding Protein [Source:RefSeq peptide;Acc:NP_499817]
27. ZK616.6 perm-3 16186 7.588 0.947 0.963 0.917 0.963 0.957 0.966 0.939 0.936 PERMeable eggshell [Source:RefSeq peptide;Acc:NP_001293836]
28. Y49E10.3 pph-4.2 8662 7.587 0.873 0.979 0.968 0.979 0.964 0.969 0.932 0.923 Serine/threonine-protein phosphatase 4 catalytic subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XTT8]
29. T04A8.14 emb-5 11746 7.586 0.899 0.981 0.935 0.981 0.967 0.962 0.955 0.906 Suppressor of Ty 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34703]
30. Y46G5A.12 vps-2 5685 7.583 0.974 0.985 0.933 0.985 0.941 0.912 0.930 0.923 related to yeast Vacuolar Protein Sorting factor [Source:RefSeq peptide;Acc:NP_496717]
31. K08D12.1 pbs-1 21677 7.582 0.945 0.983 0.972 0.983 0.950 0.903 0.897 0.949 Proteasome subunit beta type [Source:RefSeq peptide;Acc:NP_500125]
32. T19B4.2 npp-7 13073 7.58 0.945 0.979 0.901 0.979 0.944 0.969 0.920 0.943 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491665]
33. D2089.1 rsp-7 11057 7.58 0.918 0.974 0.948 0.974 0.943 0.950 0.918 0.955 Probable splicing factor, arginine/serine-rich 7 [Source:UniProtKB/Swiss-Prot;Acc:O01159]
34. F22D6.3 nars-1 18624 7.578 0.927 0.974 0.921 0.974 0.959 0.949 0.915 0.959 Asparagine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q19722]
35. Y71F9B.16 dnj-30 4262 7.577 0.964 0.973 0.946 0.973 0.918 0.936 0.927 0.940 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_001293377]
36. F46B6.3 smg-4 4959 7.577 0.914 0.975 0.946 0.975 0.950 0.960 0.916 0.941 Suppressor with Morphological effect on Genitalia [Source:RefSeq peptide;Acc:NP_741600]
37. B0035.6 B0035.6 7327 7.573 0.956 0.982 0.951 0.982 0.944 0.936 0.888 0.934
38. K01G5.4 ran-1 32379 7.572 0.931 0.979 0.951 0.979 0.945 0.942 0.908 0.937 GTP-binding nuclear protein ran-1 [Source:UniProtKB/Swiss-Prot;Acc:O17915]
39. F23B12.6 fntb-1 4392 7.572 0.958 0.960 0.929 0.960 0.953 0.945 0.903 0.964 FarNesylTransferase, Beta subunit [Source:RefSeq peptide;Acc:NP_506580]
40. R01H2.6 ubc-18 13394 7.572 0.957 0.986 0.981 0.986 0.947 0.902 0.902 0.911 UBiquitin Conjugating enzyme [Source:RefSeq peptide;Acc:NP_498541]
41. C36B1.8 gls-1 8617 7.569 0.908 0.950 0.940 0.950 0.977 0.959 0.922 0.963 Germline survival defective-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8I4M5]
42. C36B1.3 rpb-3 4442 7.568 0.911 0.974 0.975 0.974 0.932 0.937 0.926 0.939 RNA Polymerase II (B) subunit [Source:RefSeq peptide;Acc:NP_492361]
43. Y111B2A.18 rsp-3 43731 7.566 0.940 0.961 0.940 0.961 0.972 0.900 0.944 0.948 Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]
44. C02B10.5 C02B10.5 9171 7.566 0.947 0.960 0.933 0.960 0.915 0.952 0.946 0.953
45. D1022.1 ubc-6 9722 7.564 0.979 0.957 0.904 0.957 0.939 0.935 0.967 0.926 UBiquitin Conjugating enzyme [Source:RefSeq peptide;Acc:NP_001040755]
46. W02B12.3 rsp-1 9235 7.563 0.938 0.965 0.949 0.965 0.938 0.925 0.926 0.957 Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121]
47. F49E8.1 nprl-2 1851 7.562 0.925 0.940 0.960 0.940 0.945 0.957 0.963 0.932 LOW QUALITY PROTEIN: Nitrogen Permease Regulator Like homolog [Source:RefSeq peptide;Acc:NP_001294159]
48. C09G4.3 cks-1 17852 7.561 0.944 0.967 0.939 0.967 0.964 0.943 0.917 0.920 Cyclin-dependent kinases regulatory subunit [Source:UniProtKB/Swiss-Prot;Acc:Q17868]
49. CD4.6 pas-6 18332 7.56 0.942 0.968 0.953 0.968 0.953 0.911 0.941 0.924 Proteasome subunit alpha type-1 [Source:UniProtKB/Swiss-Prot;Acc:O44156]
50. F43G9.9 cpn-1 14505 7.56 0.963 0.970 0.949 0.970 0.918 0.939 0.946 0.905 CalPoNin [Source:RefSeq peptide;Acc:NP_492339]
51. T09B4.10 chn-1 5327 7.559 0.966 0.982 0.943 0.982 0.934 0.944 0.935 0.873 C-term of Hsp70-iNteracting protein (CHIP family) [Source:RefSeq peptide;Acc:NP_491781]
52. F10B5.6 emb-27 2578 7.557 0.931 0.961 0.926 0.961 0.962 0.937 0.910 0.969 APC6; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EG38]
53. E01A2.2 E01A2.2 12356 7.554 0.939 0.957 0.940 0.957 0.953 0.935 0.956 0.917 Serrate RNA effector molecule homolog [Source:UniProtKB/Swiss-Prot;Acc:Q966L5]
54. F42A6.7 hrp-1 28201 7.552 0.938 0.947 0.912 0.947 0.964 0.925 0.961 0.958 Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q22037]
55. K11D12.2 pqn-51 15951 7.55 0.947 0.969 0.919 0.969 0.939 0.947 0.946 0.914 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_504355]
56. F32H2.4 thoc-3 3861 7.547 0.928 0.967 0.944 0.967 0.941 0.964 0.912 0.924 THO Complex (transcription factor/nuclear export) subunit [Source:RefSeq peptide;Acc:NP_492416]
57. C52E4.6 cyl-1 6405 7.547 0.932 0.956 0.927 0.956 0.936 0.958 0.951 0.931 CYclin L [Source:RefSeq peptide;Acc:NP_506007]
58. R12C12.2 ran-5 14517 7.546 0.936 0.965 0.953 0.965 0.918 0.977 0.912 0.920 associated with RAN (nuclear import/export) function [Source:RefSeq peptide;Acc:NP_495208]
59. C18G1.5 hil-4 21692 7.545 0.891 0.979 0.985 0.979 0.949 0.910 0.912 0.940 Histone H1.4 [Source:UniProtKB/Swiss-Prot;Acc:O17536]
60. C18A3.5 tiar-1 25400 7.545 0.906 0.966 0.939 0.966 0.959 0.921 0.938 0.950 TIA-1/TIAL RNA binding protein homolog [Source:RefSeq peptide;Acc:NP_495121]
61. C05D11.3 txdc-9 4903 7.544 0.967 0.956 0.937 0.956 0.938 0.964 0.889 0.937 Thioredoxin domain-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q11183]
62. C18D11.4 rsp-8 18308 7.543 0.913 0.947 0.887 0.947 0.972 0.943 0.959 0.975 SR Protein (splicing factor) [Source:RefSeq peptide;Acc:NP_001255142]
63. C09G12.9 tsg-101 9451 7.543 0.968 0.963 0.953 0.963 0.960 0.896 0.928 0.912 Tumor Susceptibility Gene homolog [Source:RefSeq peptide;Acc:NP_500364]
64. C39E9.13 rfc-3 9443 7.542 0.889 0.980 0.966 0.980 0.965 0.895 0.924 0.943 RFC (DNA replication factor) family [Source:RefSeq peptide;Acc:NP_502517]
65. R07G3.5 pgam-5 11646 7.54 0.916 0.954 0.933 0.954 0.950 0.941 0.921 0.971 Serine/threonine-protein phosphatase Pgam5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09422]
66. T24D1.4 tag-179 3757 7.54 0.972 0.964 0.901 0.964 0.924 0.932 0.898 0.985
67. F59B2.7 rab-6.1 10749 7.539 0.967 0.963 0.929 0.963 0.937 0.943 0.903 0.934 Ras-related protein Rab-6.1 [Source:UniProtKB/Swiss-Prot;Acc:P34213]
68. T20G5.11 rde-4 3966 7.538 0.913 0.980 0.950 0.980 0.950 0.938 0.895 0.932 RNA interference promoting factor; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EBF5]
69. Y61A9LA.8 sut-2 11388 7.537 0.897 0.957 0.955 0.957 0.945 0.921 0.943 0.962 Zinc finger CCCH domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q95XU6]
70. C06A5.1 inst-1 5068 7.536 0.946 0.938 0.941 0.938 0.949 0.961 0.937 0.926 INtegrator complex SubuniT 1 homolog [Source:RefSeq peptide;Acc:NP_491739]
71. T12E12.4 drp-1 7694 7.535 0.944 0.955 0.943 0.955 0.952 0.954 0.925 0.907 Dynamin-Related Protein [Source:RefSeq peptide;Acc:NP_001023375]
72. Y38A8.3 ulp-2 7403 7.534 0.912 0.965 0.925 0.965 0.940 0.947 0.948 0.932 Ubiquitin-Like Protease [Source:RefSeq peptide;Acc:NP_494914]
73. K06H7.6 apc-2 2979 7.533 0.893 0.986 0.970 0.986 0.939 0.967 0.864 0.928 Anaphase-promoting complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P34514]
74. B0336.8 lgg-3 2417 7.532 0.934 0.950 0.958 0.950 0.940 0.892 0.944 0.964 Ubiquitin-like protein ATG12 [Source:RefSeq peptide;Acc:NP_498228]
75. D1054.14 prp-38 6504 7.53 0.926 0.977 0.936 0.977 0.945 0.937 0.887 0.945 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_505762]
76. T05F1.6 hsr-9 13312 7.529 0.932 0.964 0.931 0.964 0.948 0.919 0.923 0.948
77. F39H11.5 pbs-7 13631 7.529 0.944 0.972 0.939 0.972 0.954 0.900 0.926 0.922 Proteasome Beta Subunit [Source:RefSeq peptide;Acc:NP_492354]
78. F08F8.3 kap-1 31437 7.529 0.951 0.959 0.899 0.959 0.949 0.935 0.955 0.922 Kinesin-Associated Protein [Source:RefSeq peptide;Acc:NP_001021246]
79. T21B10.5 set-17 5292 7.528 0.908 0.966 0.940 0.966 0.939 0.922 0.938 0.949 SET (trithorax/polycomb) domain containing [Source:RefSeq peptide;Acc:NP_495902]
80. Y65B4BL.2 deps-1 18277 7.525 0.883 0.973 0.960 0.973 0.942 0.952 0.923 0.919
81. Y116A8C.35 uaf-2 13808 7.525 0.922 0.962 0.909 0.962 0.968 0.901 0.950 0.951 U2AF splicing factor [Source:RefSeq peptide;Acc:NP_503036]
82. T17E9.2 nmt-1 8017 7.524 0.934 0.957 0.852 0.957 0.961 0.954 0.961 0.948 Probable glycylpeptide N-tetradecanoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:P46548]
83. B0035.3 B0035.3 4118 7.524 0.910 0.975 0.928 0.975 0.928 0.975 0.921 0.912
84. Y110A7A.8 prp-31 4436 7.523 0.913 0.964 0.928 0.964 0.979 0.974 0.917 0.884 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_491527]
85. W03F9.5 ttb-1 8682 7.521 0.947 0.976 0.945 0.976 0.957 0.911 0.914 0.895 Transcription initiation factor IIB [Source:UniProtKB/Swiss-Prot;Acc:O16991]
86. T21D12.3 pqbp-1.1 5755 7.52 0.918 0.937 0.951 0.937 0.960 0.962 0.949 0.906 PQBP1 (polyglutamine tract-binding neurodegeneration protein) homolog [Source:RefSeq peptide;Acc:NP_499890]
87. F59E12.11 sam-4 8179 7.52 0.969 0.972 0.936 0.972 0.891 0.923 0.921 0.936
88. F41E6.9 vps-60 4469 7.517 0.958 0.927 0.934 0.927 0.936 0.948 0.924 0.963 related to yeast Vacuolar Protein Sorting factor [Source:RefSeq peptide;Acc:NP_505219]
89. ZC518.3 ccr-4 15531 7.517 0.887 0.979 0.958 0.979 0.947 0.929 0.960 0.878 CCR (yeast CCR4/NOT complex component) homolog [Source:RefSeq peptide;Acc:NP_001023607]
90. C17E4.10 C17E4.10 7034 7.516 0.900 0.962 0.952 0.962 0.960 0.952 0.924 0.904
91. F45F2.11 F45F2.11 6741 7.514 0.858 0.956 0.969 0.956 0.972 0.969 0.930 0.904
92. Y87G2A.10 vps-28 3403 7.514 0.968 0.969 0.962 0.969 0.966 0.929 0.909 0.842 Vacuolar protein sorting-associated protein 28 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9NA26]
93. F39B2.11 mtx-1 8526 7.513 0.947 0.965 0.935 0.965 0.941 0.945 0.928 0.887 Metaxin-1 homolog [Source:UniProtKB/Swiss-Prot;Acc:O45503]
94. C09H10.6 nasp-1 6094 7.513 0.908 0.975 0.968 0.975 0.944 0.942 0.903 0.898 NASP (human Nuclear Autoantigenic Sperm Protein) homolog [Source:RefSeq peptide;Acc:NP_496380]
95. F39H11.2 tlf-1 6231 7.511 0.920 0.963 0.932 0.963 0.960 0.953 0.911 0.909 TBP-Like Factor [Source:RefSeq peptide;Acc:NP_492356]
96. T06A10.4 lsy-13 7631 7.511 0.930 0.963 0.907 0.963 0.955 0.947 0.898 0.948
97. T12D8.6 mlc-5 19567 7.51 0.956 0.962 0.914 0.962 0.951 0.916 0.908 0.941 Myosin-2 essential light chain [Source:UniProtKB/Swiss-Prot;Acc:Q9XVI9]
98. Y71D11A.2 smr-1 4976 7.51 0.904 0.955 0.950 0.955 0.949 0.947 0.940 0.910 SMN (Survival of Motor Neuron protein) Related [Source:RefSeq peptide;Acc:NP_001022932]
99. T05C12.6 mig-5 5242 7.51 0.872 0.976 0.939 0.976 0.960 0.928 0.920 0.939 Cytoplasmic signalling transducer; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EC49]
100. K08F11.5 miro-1 4512 7.507 0.904 0.952 0.967 0.952 0.953 0.978 0.914 0.887 Mitochondrial Rho GTPase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94263]

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Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA