C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for Y56A3A.20

Gene ID Gene Name Reads Transcripts Annotation
Y56A3A.20 ccf-1 18463 Y56A3A.20 CCR4-NOT transcription complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q17345]

Genes with expression patterns similar to Y56A3A.20

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. Y56A3A.20 ccf-1 18463 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 CCR4-NOT transcription complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q17345]
2. C39E9.14 dli-1 5650 7.785 0.951 0.982 0.981 0.982 0.985 0.971 0.956 0.977 Dynein Light Intermediate chain [Source:RefSeq peptide;Acc:NP_502518]
3. C15H11.4 dhs-22 21674 7.774 0.980 0.971 0.979 0.971 0.973 0.973 0.962 0.965 DeHydrogenases, Short chain [Source:RefSeq peptide;Acc:NP_506570]
4. K10C3.2 ensa-1 19836 7.746 0.952 0.976 0.977 0.976 0.962 0.974 0.959 0.970 ENdoSulfine Alpha [Source:RefSeq peptide;Acc:NP_492609]
5. C28H8.9 dpff-1 8684 7.739 0.951 0.987 0.977 0.987 0.987 0.975 0.959 0.916 Zinc finger protein dpff-1 [Source:UniProtKB/Swiss-Prot;Acc:Q09477]
6. C02B10.5 C02B10.5 9171 7.736 0.963 0.981 0.981 0.981 0.951 0.958 0.955 0.966
7. Y113G7B.23 swsn-1 13766 7.732 0.942 0.972 0.980 0.972 0.970 0.980 0.956 0.960 SWI/SNF nucleosome remodeling complex component [Source:RefSeq peptide;Acc:NP_001256906]
8. Y54E2A.3 tac-1 6308 7.73 0.967 0.976 0.947 0.976 0.976 0.971 0.944 0.973 TACC (transforming acid coiled coil) protein family [Source:RefSeq peptide;Acc:NP_497059]
9. Y102A5A.1 cand-1 11808 7.728 0.962 0.977 0.969 0.977 0.985 0.986 0.945 0.927 Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:G5ED41]
10. F08F8.3 kap-1 31437 7.728 0.974 0.979 0.960 0.979 0.968 0.983 0.939 0.946 Kinesin-Associated Protein [Source:RefSeq peptide;Acc:NP_001021246]
11. D1022.1 ubc-6 9722 7.726 0.981 0.978 0.980 0.978 0.953 0.954 0.960 0.942 UBiquitin Conjugating enzyme [Source:RefSeq peptide;Acc:NP_001040755]
12. C18D11.4 rsp-8 18308 7.718 0.949 0.950 0.953 0.950 0.986 0.971 0.970 0.989 SR Protein (splicing factor) [Source:RefSeq peptide;Acc:NP_001255142]
13. K11D12.2 pqn-51 15951 7.717 0.981 0.980 0.984 0.980 0.959 0.974 0.930 0.929 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_504355]
14. R144.4 wip-1 14168 7.714 0.950 0.976 0.974 0.976 0.962 0.953 0.945 0.978 Wiskott-Aldrich syndrome protein (WASP)-Interacting Protein and gene assignment [Source:RefSeq peptide;Acc:NP_741123]
15. Y38A8.2 pbs-3 18117 7.713 0.984 0.982 0.979 0.982 0.974 0.957 0.939 0.916 Proteasome subunit beta type-3 [Source:UniProtKB/Swiss-Prot;Acc:Q23237]
16. T05H4.6 erfa-1 12542 7.713 0.954 0.954 0.961 0.954 0.972 0.966 0.970 0.982 Eukaryotic peptide chain release factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O16520]
17. ZK616.6 perm-3 16186 7.71 0.969 0.962 0.942 0.962 0.967 0.970 0.972 0.966 PERMeable eggshell [Source:RefSeq peptide;Acc:NP_001293836]
18. C36B1.8 gls-1 8617 7.707 0.940 0.991 0.977 0.991 0.981 0.953 0.900 0.974 Germline survival defective-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8I4M5]
19. T17E9.2 nmt-1 8017 7.707 0.955 0.967 0.964 0.967 0.984 0.966 0.954 0.950 Probable glycylpeptide N-tetradecanoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:P46548]
20. T01G1.3 sec-31 10504 7.706 0.946 0.987 0.986 0.987 0.978 0.959 0.900 0.963 yeast SEC homolog [Source:RefSeq peptide;Acc:NP_502144]
21. F23B12.6 fntb-1 4392 7.705 0.979 0.980 0.974 0.980 0.971 0.956 0.900 0.965 FarNesylTransferase, Beta subunit [Source:RefSeq peptide;Acc:NP_506580]
22. F55C5.8 srpa-68 6665 7.704 0.975 0.974 0.962 0.974 0.987 0.930 0.936 0.966 Probable signal recognition particle subunit SRP68 [Source:UniProtKB/Swiss-Prot;Acc:Q20822]
23. F02E9.9 dpt-1 5401 7.703 0.939 0.958 0.957 0.958 0.975 0.975 0.956 0.985 Dipeptidyl Peptidase Three [Source:RefSeq peptide;Acc:NP_001040648]
24. F22D6.3 nars-1 18624 7.701 0.937 0.978 0.938 0.978 0.983 0.968 0.951 0.968 Asparagine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q19722]
25. R05D11.3 ran-4 15494 7.699 0.956 0.960 0.958 0.960 0.972 0.979 0.939 0.975 Probable nuclear transport factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q21735]
26. T09B4.10 chn-1 5327 7.697 0.966 0.976 0.962 0.976 0.953 0.972 0.943 0.949 C-term of Hsp70-iNteracting protein (CHIP family) [Source:RefSeq peptide;Acc:NP_491781]
27. C27B7.1 spr-2 14958 7.693 0.953 0.988 0.979 0.988 0.968 0.927 0.936 0.954 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
28. F37E3.1 ncbp-1 5649 7.692 0.941 0.972 0.971 0.972 0.977 0.961 0.932 0.966 Nuclear cap-binding protein subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O01763]
29. R02D3.5 fnta-1 5258 7.689 0.962 0.984 0.976 0.984 0.981 0.924 0.939 0.939 FarNesylTransferase, Alpha subunit [Source:RefSeq peptide;Acc:NP_499882]
30. T10F2.4 prp-19 11298 7.686 0.978 0.961 0.952 0.961 0.983 0.958 0.961 0.932 Pre-mRNA-processing factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q10051]
31. T24D1.4 tag-179 3757 7.684 0.969 0.954 0.975 0.954 0.961 0.960 0.945 0.966
32. Y54E5A.4 npp-4 6288 7.683 0.983 0.973 0.982 0.973 0.950 0.953 0.909 0.960 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_493552]
33. F42A6.7 hrp-1 28201 7.683 0.954 0.963 0.981 0.963 0.976 0.968 0.944 0.934 Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q22037]
34. Y39G10AR.9 Y39G10AR.9 3972 7.682 0.934 0.984 0.916 0.984 0.982 0.977 0.965 0.940
35. C09G12.9 tsg-101 9451 7.681 0.984 0.962 0.975 0.962 0.954 0.929 0.958 0.957 Tumor Susceptibility Gene homolog [Source:RefSeq peptide;Acc:NP_500364]
36. C47D12.6 tars-1 23488 7.679 0.961 0.955 0.948 0.955 0.983 0.973 0.948 0.956 Threonine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:P52709]
37. R06A4.9 pfs-2 4733 7.678 0.927 0.971 0.973 0.971 0.952 0.967 0.954 0.963 Polyadenylation Factor Subunit homolog [Source:RefSeq peptide;Acc:NP_001293597]
38. F25G6.9 F25G6.9 3071 7.675 0.964 0.949 0.984 0.949 0.968 0.949 0.962 0.950
39. Y57G7A.10 emc-2 4837 7.674 0.968 0.974 0.948 0.974 0.984 0.946 0.944 0.936 EMC Endoplasmic Membrane protein Complex (yeast EMC) homolog [Source:RefSeq peptide;Acc:NP_001254028]
40. Y73B6BL.6 sqd-1 41708 7.673 0.945 0.970 0.963 0.970 0.966 0.968 0.954 0.937 homologous to Drosophila SQD (squid) protein [Source:RefSeq peptide;Acc:NP_001023573]
41. R07G3.5 pgam-5 11646 7.672 0.945 0.955 0.957 0.955 0.977 0.972 0.956 0.955 Serine/threonine-protein phosphatase Pgam5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q09422]
42. T08B2.9 fars-1 12650 7.672 0.954 0.958 0.967 0.958 0.944 0.973 0.945 0.973 Phenylalanyl Amino-acyl tRNA Synthetase [Source:RefSeq peptide;Acc:NP_491792]
43. Y111B2A.18 rsp-3 43731 7.671 0.962 0.952 0.947 0.952 0.977 0.971 0.967 0.943 Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]
44. F33D11.11 vpr-1 18001 7.669 0.924 0.964 0.959 0.964 0.977 0.971 0.950 0.960 Major sperm protein [Source:RefSeq peptide;Acc:NP_491704]
45. F57B10.11 bag-1 3395 7.667 0.962 0.964 0.958 0.964 0.953 0.967 0.951 0.948 BAG family molecular chaperone regulator 1 [Source:UniProtKB/Swiss-Prot;Acc:O44739]
46. F13G3.4 dylt-1 21345 7.667 0.950 0.948 0.973 0.948 0.950 0.979 0.970 0.949 DYnein Light chain (Tctex type) [Source:RefSeq peptide;Acc:NP_492063]
47. Y54E10A.9 vbh-1 28746 7.666 0.945 0.959 0.951 0.959 0.979 0.962 0.956 0.955 Vasa-and Belle-like Helicase [Source:RefSeq peptide;Acc:NP_491113]
48. T19B4.2 npp-7 13073 7.666 0.962 0.976 0.985 0.976 0.966 0.938 0.909 0.954 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491665]
49. T04A8.14 emb-5 11746 7.666 0.928 0.973 0.971 0.973 0.973 0.971 0.940 0.937 Suppressor of Ty 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34703]
50. C18G1.4 pgl-3 5291 7.664 0.977 0.986 0.959 0.986 0.983 0.915 0.930 0.928 PGL-3; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EBV6]
51. F39H11.5 pbs-7 13631 7.663 0.982 0.987 0.981 0.987 0.959 0.924 0.944 0.899 Proteasome Beta Subunit [Source:RefSeq peptide;Acc:NP_492354]
52. F54C8.5 rheb-1 6358 7.663 0.969 0.957 0.963 0.957 0.953 0.970 0.931 0.963 GTP-binding protein Rheb homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P34443]
53. F33D4.7 emc-6 6534 7.658 0.968 0.945 0.981 0.945 0.962 0.958 0.937 0.962 EMC Endoplasmic Membrane protein Complex (yeast EMC) homolog [Source:RefSeq peptide;Acc:NP_501258]
54. T12D8.6 mlc-5 19567 7.658 0.972 0.971 0.974 0.971 0.951 0.952 0.926 0.941 Myosin-2 essential light chain [Source:UniProtKB/Swiss-Prot;Acc:Q9XVI9]
55. D2089.1 rsp-7 11057 7.658 0.950 0.969 0.966 0.969 0.975 0.960 0.911 0.958 Probable splicing factor, arginine/serine-rich 7 [Source:UniProtKB/Swiss-Prot;Acc:O01159]
56. C50C3.6 prp-8 19582 7.657 0.918 0.955 0.966 0.955 0.978 0.965 0.960 0.960 Pre-mRNA-splicing factor 8 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34369]
57. T12E12.4 drp-1 7694 7.657 0.966 0.977 0.971 0.977 0.968 0.959 0.903 0.936 Dynamin-Related Protein [Source:RefSeq peptide;Acc:NP_001023375]
58. F41E6.9 vps-60 4469 7.657 0.974 0.952 0.972 0.952 0.965 0.949 0.938 0.955 related to yeast Vacuolar Protein Sorting factor [Source:RefSeq peptide;Acc:NP_505219]
59. W02F12.6 sna-1 7338 7.656 0.971 0.980 0.951 0.980 0.954 0.941 0.923 0.956 Small Nuclear RNA (snRNA) Associated protein [Source:RefSeq peptide;Acc:NP_504701]
60. B0495.6 moa-2 6366 7.655 0.936 0.956 0.942 0.956 0.982 0.968 0.938 0.977
61. Y53C12A.4 mop-25.2 7481 7.655 0.957 0.987 0.984 0.987 0.953 0.946 0.896 0.945 MO25-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O18211]
62. F39B2.10 dnj-12 35162 7.655 0.946 0.961 0.965 0.961 0.963 0.963 0.953 0.943 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_493570]
63. H19N07.1 erfa-3 19869 7.654 0.937 0.963 0.949 0.963 0.975 0.984 0.910 0.973 Eukaryotic Release FActor homolog [Source:RefSeq peptide;Acc:NP_001256292]
64. C47B2.4 pbs-2 19805 7.652 0.969 0.969 0.975 0.969 0.970 0.942 0.962 0.896 Proteasome subunit beta type [Source:RefSeq peptide;Acc:NP_493271]
65. Y71F9B.16 dnj-30 4262 7.651 0.967 0.982 0.964 0.982 0.970 0.944 0.908 0.934 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_001293377]
66. F26F4.10 rars-1 9971 7.648 0.945 0.944 0.951 0.944 0.985 0.976 0.958 0.945 Probable arginine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q19825]
67. T10C6.4 srx-44 8454 7.648 0.984 0.955 0.958 0.955 0.979 0.945 0.957 0.915 Serpentine Receptor, class X [Source:RefSeq peptide;Acc:NP_507023]
68. B0035.3 B0035.3 4118 7.643 0.945 0.972 0.989 0.972 0.956 0.971 0.886 0.952
69. F28B3.7 him-1 18274 7.643 0.915 0.976 0.972 0.976 0.956 0.962 0.929 0.957 Structural maintenance of chromosomes protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O01789]
70. Y54E5B.3 let-49 2437 7.641 0.969 0.972 0.963 0.972 0.930 0.950 0.945 0.940 Mediator of RNA polymerase II transcription subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q95Q17]
71. T19A6.3 nepr-1 6606 7.64 0.970 0.971 0.964 0.971 0.970 0.942 0.926 0.926 Nuclear envelope phosphatase-regulatory subunit 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9XXN3]
72. Y54G11A.11 Y54G11A.11 14933 7.639 0.934 0.980 0.983 0.980 0.981 0.934 0.897 0.950 Transcription elongation factor 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9XVZ8]
73. C18A3.5 tiar-1 25400 7.639 0.943 0.966 0.964 0.966 0.962 0.980 0.897 0.961 TIA-1/TIAL RNA binding protein homolog [Source:RefSeq peptide;Acc:NP_495121]
74. C52E4.6 cyl-1 6405 7.639 0.946 0.966 0.957 0.966 0.960 0.962 0.939 0.943 CYclin L [Source:RefSeq peptide;Acc:NP_506007]
75. C08B6.7 wdr-20 7575 7.638 0.938 0.985 0.966 0.985 0.964 0.957 0.885 0.958 WD repeat-containing protein 20 homolog [Source:UniProtKB/Swiss-Prot;Acc:D9N129]
76. Y59A8B.9 ebp-3 6183 7.637 0.938 0.976 0.943 0.976 0.979 0.975 0.921 0.929 microtubule End Binding Protein [Source:RefSeq peptide;Acc:NP_507528]
77. F58B6.3 par-2 3914 7.636 0.972 0.966 0.972 0.966 0.967 0.922 0.954 0.917
78. F43E2.7 mtch-1 30689 7.636 0.969 0.957 0.967 0.957 0.971 0.960 0.922 0.933 MiTochondrial Carrier Homolog [Source:RefSeq peptide;Acc:NP_871994]
79. D1054.14 prp-38 6504 7.635 0.964 0.974 0.965 0.974 0.969 0.932 0.910 0.947 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_505762]
80. F10D11.1 sod-2 7480 7.634 0.949 0.959 0.943 0.959 0.975 0.982 0.902 0.965 Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P31161]
81. T06A10.4 lsy-13 7631 7.633 0.943 0.977 0.971 0.977 0.971 0.937 0.894 0.963
82. C25D7.8 otub-1 7941 7.632 0.966 0.979 0.954 0.979 0.943 0.956 0.899 0.956 Ubiquitin thioesterase otubain-like [Source:UniProtKB/Swiss-Prot;Acc:Q9XVR6]
83. CD4.4 vps-37 4265 7.632 0.957 0.930 0.973 0.930 0.976 0.956 0.939 0.971 related to yeast Vacuolar Protein Sorting factor [Source:RefSeq peptide;Acc:NP_504474]
84. F25D1.1 ppm-1 16992 7.63 0.972 0.977 0.974 0.977 0.962 0.950 0.926 0.892 Protein Phosphatase, Mg2+/Mn2+ dependent [Source:RefSeq peptide;Acc:NP_001122929]
85. Y34D9A.1 mrpl-38 5291 7.63 0.939 0.959 0.947 0.959 0.977 0.970 0.919 0.960 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_490808]
86. T16G1.11 eif-3.K 14014 7.63 0.953 0.949 0.949 0.949 0.971 0.974 0.934 0.951 Eukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/Swiss-Prot;Acc:Q9XUP3]
87. D1081.8 cdc-5L 8553 7.63 0.955 0.971 0.983 0.971 0.965 0.923 0.935 0.927 Cell Division Cycle related [Source:RefSeq peptide;Acc:NP_492303]
88. Y71D11A.2 smr-1 4976 7.629 0.937 0.973 0.959 0.973 0.971 0.965 0.965 0.886 SMN (Survival of Motor Neuron protein) Related [Source:RefSeq peptide;Acc:NP_001022932]
89. T04A8.10 sel-13 3109 7.629 0.950 0.970 0.979 0.970 0.964 0.957 0.922 0.917 Suppressor/Enhancer of Lin-12 [Source:RefSeq peptide;Acc:NP_497963]
90. ZK507.6 cya-1 6807 7.627 0.946 0.986 0.975 0.986 0.963 0.940 0.936 0.895 G2/mitotic-specific cyclin-A1 [Source:UniProtKB/Swiss-Prot;Acc:P34638]
91. F36D4.3 hum-2 16493 7.626 0.964 0.974 0.974 0.974 0.958 0.941 0.928 0.913 Heavy chain, Unconventional Myosin [Source:RefSeq peptide;Acc:NP_505433]
92. Y57A10A.18 pqn-87 31844 7.626 0.920 0.981 0.984 0.981 0.953 0.961 0.943 0.903 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_496594]
93. Y54E2A.2 smg-9 4494 7.626 0.926 0.983 0.984 0.983 0.949 0.964 0.902 0.935
94. Y116A8C.35 uaf-2 13808 7.625 0.931 0.962 0.950 0.962 0.985 0.962 0.953 0.920 U2AF splicing factor [Source:RefSeq peptide;Acc:NP_503036]
95. C47G2.5 saps-1 7555 7.625 0.958 0.977 0.954 0.977 0.966 0.947 0.951 0.895 SAPS (phosphatase associated) domain protein [Source:RefSeq peptide;Acc:NP_496414]
96. F58A4.3 hcp-3 8787 7.624 0.961 0.977 0.967 0.977 0.960 0.927 0.938 0.917 Histone H3-like centromeric protein hcp-3 [Source:UniProtKB/Swiss-Prot;Acc:P34470]
97. C05D11.3 txdc-9 4903 7.622 0.980 0.982 0.960 0.982 0.970 0.946 0.846 0.956 Thioredoxin domain-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q11183]
98. F39B2.2 uev-1 13597 7.622 0.961 0.962 0.954 0.962 0.972 0.926 0.945 0.940 Ubiquitin-conjugating enzyme E2 variant 1 [Source:UniProtKB/Swiss-Prot;Acc:O45495]
99. K02F2.1 dpf-3 11465 7.622 0.940 0.965 0.980 0.965 0.988 0.952 0.948 0.884 Dipeptidyl Peptidase Four (IV) family [Source:RefSeq peptide;Acc:NP_491956]
100. Y53C12A.6 Y53C12A.6 1631 7.622 0.983 0.944 0.989 0.944 0.968 0.974 0.932 0.888

There are 3224 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA