C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for F54E7.8

Gene ID Gene Name Reads Transcripts Annotation
F54E7.8 ska-3 2053 F54E7.8 Spindle and Kinetochore-Associated protein homolog [Source:RefSeq peptide;Acc:NP_498220]

Genes with expression patterns similar to F54E7.8

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. F54E7.8 ska-3 2053 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Spindle and Kinetochore-Associated protein homolog [Source:RefSeq peptide;Acc:NP_498220]
2. W01G7.3 rpb-11 7826 7.566 0.961 0.915 0.967 0.915 0.928 0.952 0.953 0.975 Probable DNA-directed RNA polymerase II subunit RPB11 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVH6]
3. F23F1.1 nfyc-1 9983 7.534 0.961 0.910 0.959 0.910 0.938 0.974 0.933 0.949 Nuclear transcription Factor Y, C (gamma) subunit [Source:RefSeq peptide;Acc:NP_493645]
4. C27B7.1 spr-2 14958 7.525 0.951 0.933 0.959 0.933 0.905 0.938 0.953 0.953 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
5. Y17G7A.1 hmg-12 29989 7.523 0.962 0.943 0.935 0.943 0.897 0.950 0.967 0.926 HMG [Source:RefSeq peptide;Acc:NP_496544]
6. C36B1.3 rpb-3 4442 7.519 0.957 0.925 0.957 0.925 0.924 0.966 0.949 0.916 RNA Polymerase II (B) subunit [Source:RefSeq peptide;Acc:NP_492361]
7. Y65B4BL.2 deps-1 18277 7.514 0.945 0.925 0.943 0.925 0.922 0.937 0.975 0.942
8. F53F10.5 npp-11 3378 7.507 0.979 0.901 0.946 0.901 0.946 0.983 0.923 0.928 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491232]
9. B0252.4 cyn-10 3765 7.497 0.960 0.929 0.931 0.929 0.937 0.928 0.939 0.944 Peptidyl-prolyl cis-trans isomerase 10 [Source:UniProtKB/Swiss-Prot;Acc:P52017]
10. W02B12.3 rsp-1 9235 7.497 0.967 0.917 0.959 0.917 0.900 0.957 0.965 0.915 Probable splicing factor, arginine/serine-rich 1 [Source:UniProtKB/Swiss-Prot;Acc:Q23121]
11. Y39G10AR.7 ekl-7 7072 7.497 0.927 0.924 0.940 0.924 0.933 0.977 0.917 0.955
12. Y113G7B.5 fog-2 2753 7.485 0.970 0.930 0.932 0.930 0.927 0.964 0.917 0.915 Feminization Of Germline [Source:RefSeq peptide;Acc:NP_001041187]
13. F31E3.3 rfc-4 3828 7.485 0.938 0.926 0.943 0.926 0.963 0.952 0.937 0.900 Replication factor C subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:P53016]
14. F10G7.3 unc-85 5206 7.479 0.962 0.919 0.905 0.919 0.930 0.966 0.923 0.955 Probable histone chaperone asf-1 [Source:UniProtKB/Swiss-Prot;Acc:Q19326]
15. T28D9.2 rsp-5 6460 7.477 0.955 0.936 0.922 0.936 0.891 0.984 0.924 0.929 Probable splicing factor, arginine/serine-rich 5 [Source:UniProtKB/Swiss-Prot;Acc:Q10021]
16. F33H2.5 pole-1 3734 7.476 0.959 0.891 0.972 0.891 0.900 0.968 0.938 0.957 DNA polymerase [Source:RefSeq peptide;Acc:NP_493616]
17. C06A8.4 skr-17 2589 7.468 0.947 0.924 0.961 0.924 0.933 0.951 0.895 0.933 SKp1 Related (ubiquitin ligase complex component) [Source:RefSeq peptide;Acc:NP_495638]
18. Y37E3.15 npp-13 7250 7.464 0.948 0.950 0.919 0.950 0.911 0.904 0.928 0.954 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_001293351]
19. T25G3.3 T25G3.3 7285 7.461 0.972 0.916 0.941 0.916 0.910 0.931 0.930 0.945
20. K01G5.4 ran-1 32379 7.459 0.972 0.938 0.938 0.938 0.911 0.934 0.914 0.914 GTP-binding nuclear protein ran-1 [Source:UniProtKB/Swiss-Prot;Acc:O17915]
21. C02B10.5 C02B10.5 9171 7.458 0.980 0.900 0.938 0.900 0.882 0.960 0.950 0.948
22. D1054.14 prp-38 6504 7.455 0.963 0.912 0.948 0.912 0.895 0.958 0.927 0.940 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_505762]
23. F56C9.6 F56C9.6 4303 7.452 0.962 0.931 0.959 0.931 0.867 0.939 0.938 0.925
24. W02F12.6 sna-1 7338 7.45 0.971 0.923 0.955 0.923 0.936 0.914 0.913 0.915 Small Nuclear RNA (snRNA) Associated protein [Source:RefSeq peptide;Acc:NP_504701]
25. T10F2.4 prp-19 11298 7.45 0.964 0.929 0.945 0.929 0.903 0.882 0.956 0.942 Pre-mRNA-processing factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q10051]
26. T23H2.1 npp-12 12425 7.447 0.949 0.932 0.946 0.932 0.884 0.956 0.932 0.916 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491855]
27. F42A6.7 hrp-1 28201 7.447 0.955 0.942 0.921 0.942 0.939 0.911 0.938 0.899 Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q22037]
28. W02D9.1 pri-2 6048 7.445 0.948 0.903 0.966 0.903 0.886 0.909 0.955 0.975 DNA primase large subunit [Source:UniProtKB/Swiss-Prot;Acc:O02334]
29. Y38A8.3 ulp-2 7403 7.444 0.960 0.902 0.947 0.902 0.913 0.964 0.932 0.924 Ubiquitin-Like Protease [Source:RefSeq peptide;Acc:NP_494914]
30. B0336.8 lgg-3 2417 7.443 0.965 0.908 0.972 0.908 0.923 0.921 0.957 0.889 Ubiquitin-like protein ATG12 [Source:RefSeq peptide;Acc:NP_498228]
31. Y32F6A.1 set-22 2474 7.442 0.958 0.923 0.935 0.923 0.922 0.883 0.963 0.935 SET (trithorax/polycomb) domain containing [Source:RefSeq peptide;Acc:NP_505681]
32. D1081.8 cdc-5L 8553 7.442 0.968 0.930 0.942 0.930 0.875 0.933 0.939 0.925 Cell Division Cycle related [Source:RefSeq peptide;Acc:NP_492303]
33. K12C11.2 smo-1 12784 7.441 0.958 0.904 0.941 0.904 0.905 0.937 0.950 0.942 Small ubiquitin-related modifier [Source:UniProtKB/Swiss-Prot;Acc:P55853]
34. F32A5.7 lsm-4 3785 7.441 0.965 0.902 0.918 0.902 0.924 0.969 0.918 0.943 Probable U6 snRNA-associated Sm-like protein LSm4 [Source:UniProtKB/Swiss-Prot;Acc:Q19952]
35. Y41D4B.19 npp-8 12992 7.44 0.963 0.933 0.935 0.933 0.934 0.961 0.879 0.902 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_500102]
36. C05C8.6 hpo-9 8263 7.44 0.961 0.904 0.955 0.904 0.946 0.945 0.923 0.902
37. F53A3.2 polh-1 2467 7.438 0.926 0.936 0.909 0.936 0.919 0.969 0.893 0.950 POLH (DNA polymerase eta) homolog [Source:RefSeq peptide;Acc:NP_497480]
38. F28C6.6 suf-1 3642 7.434 0.907 0.939 0.940 0.939 0.910 0.970 0.966 0.863 SUppressor-of-Forked (Drosophila) homolog [Source:RefSeq peptide;Acc:NP_495825]
39. F52C9.7 mog-3 9880 7.432 0.963 0.911 0.932 0.911 0.913 0.943 0.954 0.905 Masculinisation Of Germline [Source:RefSeq peptide;Acc:NP_498134]
40. ZK1098.8 mut-7 4940 7.43 0.967 0.898 0.966 0.898 0.901 0.954 0.919 0.927 Exonuclease mut-7 [Source:UniProtKB/Swiss-Prot;Acc:P34607]
41. F26A1.1 F26A1.1 2622 7.428 0.958 0.926 0.937 0.926 0.969 0.936 0.911 0.865
42. B0035.3 B0035.3 4118 7.427 0.964 0.936 0.918 0.936 0.890 0.924 0.925 0.934
43. D1054.15 plrg-1 2282 7.427 0.971 0.899 0.937 0.899 0.917 0.941 0.938 0.925 PLeiotropic ReGulator (vertebrate) homolog [Source:RefSeq peptide;Acc:NP_001256260]
44. F59C6.4 exos-3 2626 7.422 0.958 0.895 0.914 0.895 0.933 0.955 0.942 0.930 EXOSome (multiexonuclease complex) component [Source:RefSeq peptide;Acc:NP_492751]
45. ZK381.1 him-3 4913 7.419 0.933 0.939 0.915 0.939 0.885 0.971 0.944 0.893 High Incidence of Males (increased X chromosome loss) [Source:RefSeq peptide;Acc:NP_501078]
46. C39E9.13 rfc-3 9443 7.418 0.931 0.929 0.933 0.929 0.917 0.882 0.947 0.950 RFC (DNA replication factor) family [Source:RefSeq peptide;Acc:NP_502517]
47. Y46G5A.4 snrp-200 13827 7.414 0.916 0.924 0.911 0.924 0.902 0.939 0.951 0.947 Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Source:UniProtKB/Swiss-Prot;Acc:Q9U2G0]
48. T07C4.10 T07C4.10 1563 7.411 0.957 0.932 0.939 0.932 0.850 0.907 0.966 0.928
49. F32H2.4 thoc-3 3861 7.409 0.957 0.897 0.927 0.897 0.933 0.948 0.912 0.938 THO Complex (transcription factor/nuclear export) subunit [Source:RefSeq peptide;Acc:NP_492416]
50. K02F3.11 rnp-5 6205 7.406 0.947 0.896 0.954 0.896 0.933 0.970 0.916 0.894 RNP (RRM RNA binding domain) containing [Source:RefSeq peptide;Acc:NP_497276]
51. Y54E5A.4 npp-4 6288 7.406 0.961 0.912 0.933 0.912 0.894 0.940 0.915 0.939 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_493552]
52. Y37D8A.11 cec-7 8801 7.405 0.924 0.920 0.932 0.920 0.905 0.970 0.870 0.964 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_001022828]
53. F10E9.7 F10E9.7 1842 7.401 0.951 0.889 0.965 0.889 0.912 0.963 0.903 0.929
54. F32H2.1 snpc-4 7581 7.4 0.948 0.917 0.924 0.917 0.890 0.953 0.921 0.930 snRNA-activating protein complex subunit 4 homolog [Source:UniProtKB/Swiss-Prot;Acc:P91868]
55. K04C2.4 brd-1 2439 7.399 0.928 0.906 0.951 0.906 0.943 0.913 0.926 0.926 BRCA1-associated RING domain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q21209]
56. Y54G9A.7 Y54G9A.7 6281 7.399 0.956 0.885 0.925 0.885 0.935 0.983 0.873 0.957 2O16; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EC67]
57. C24G6.1 syp-2 2843 7.399 0.957 0.887 0.938 0.887 0.928 0.954 0.932 0.916
58. C06A8.2 snpc-1.1 1378 7.396 0.958 0.941 0.952 0.941 0.903 0.959 0.827 0.915 SNAPc (Small Nuclear RNA Activating Complex) homolog [Source:RefSeq peptide;Acc:NP_495636]
59. C25A1.4 C25A1.4 15507 7.393 0.964 0.918 0.951 0.918 0.908 0.965 0.899 0.870
60. Y37D8A.18 mrps-10 4551 7.393 0.913 0.911 0.912 0.911 0.958 0.958 0.909 0.921 Probable 28S ribosomal protein S10, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XWV5]
61. Y56A3A.17 npp-16 5391 7.392 0.960 0.916 0.922 0.916 0.910 0.943 0.935 0.890 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_499550]
62. B0495.6 moa-2 6366 7.391 0.958 0.916 0.946 0.916 0.908 0.873 0.937 0.937
63. C18G1.5 hil-4 21692 7.39 0.945 0.900 0.956 0.900 0.900 0.924 0.943 0.922 Histone H1.4 [Source:UniProtKB/Swiss-Prot;Acc:O17536]
64. F18E2.3 scc-3 13464 7.389 0.971 0.941 0.951 0.941 0.850 0.886 0.906 0.943 Cohesin subunit scc-3 [Source:UniProtKB/Swiss-Prot;Acc:Q19555]
65. T23B5.1 prmt-3 10677 7.388 0.934 0.923 0.945 0.923 0.896 0.892 0.909 0.966 PRotein arginine MethylTransferase [Source:RefSeq peptide;Acc:NP_001040990]
66. Y37D8A.9 mrg-1 14369 7.388 0.958 0.917 0.921 0.917 0.929 0.959 0.851 0.936 human MRG (Mortality factor-Related Gene) related [Source:RefSeq peptide;Acc:NP_499675]
67. F26F4.11 rpb-8 7601 7.388 0.926 0.932 0.942 0.932 0.933 0.960 0.883 0.880 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Source:UniProtKB/Swiss-Prot;Acc:Q19826]
68. Y47G6A.2 inx-22 3576 7.386 0.927 0.921 0.928 0.921 0.919 0.887 0.963 0.920 Innexin [Source:RefSeq peptide;Acc:NP_491186]
69. C34E10.5 prmt-5 12277 7.386 0.928 0.914 0.921 0.914 0.897 0.962 0.941 0.909 Protein arginine N-methyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:P46580]
70. Y17G7B.5 mcm-2 6246 7.381 0.943 0.913 0.919 0.913 0.887 0.929 0.914 0.963 DNA helicase [Source:RefSeq peptide;Acc:NP_001022416]
71. R53.6 psf-1 4721 7.381 0.947 0.892 0.938 0.892 0.918 0.978 0.877 0.939 Probable DNA replication complex GINS protein PSF1 [Source:UniProtKB/Swiss-Prot;Acc:Q22019]
72. C36B1.5 prp-4 2714 7.38 0.928 0.908 0.925 0.908 0.918 0.976 0.920 0.897 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_492363]
73. Y71G12B.9 lin-65 7476 7.377 0.958 0.915 0.941 0.915 0.899 0.960 0.854 0.935 LIN-65L; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q95XN0]
74. Y54E5B.3 let-49 2437 7.377 0.962 0.890 0.951 0.890 0.954 0.897 0.932 0.901 Mediator of RNA polymerase II transcription subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q95Q17]
75. C16C10.6 ccdc-55 3581 7.377 0.943 0.916 0.916 0.916 0.925 0.889 0.921 0.951 Nuclear speckle splicing regulatory protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q09252]
76. C26E6.4 rpb-2 7053 7.377 0.909 0.920 0.883 0.920 0.903 0.949 0.941 0.952 DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578]
77. C52E4.6 cyl-1 6405 7.376 0.952 0.905 0.928 0.905 0.948 0.931 0.920 0.887 CYclin L [Source:RefSeq peptide;Acc:NP_506007]
78. F59E12.2 zyg-1 1718 7.374 0.926 0.909 0.902 0.909 0.913 0.959 0.939 0.917 Probable serine/threonine-protein kinase zyg-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9GT24]
79. Y111B2A.18 rsp-3 43731 7.374 0.948 0.920 0.957 0.920 0.912 0.899 0.922 0.896 Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]
80. PAR2.1 mtss-1 4055 7.372 0.917 0.913 0.871 0.913 0.960 0.967 0.913 0.918 Single-stranded DNA-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34496]
81. Y43F4B.4 npp-18 4780 7.371 0.977 0.901 0.919 0.901 0.944 0.930 0.924 0.875 Nucleoporin SEH1 [Source:UniProtKB/Swiss-Prot;Acc:O45933]
82. Y47D3A.26 smc-3 6256 7.37 0.918 0.931 0.935 0.931 0.909 0.985 0.897 0.864 Structural maintenance of chromosomes protein 3 [Source:UniProtKB/Swiss-Prot;Acc:B2FDA8]
83. F28B3.8 imb-1 7515 7.369 0.951 0.887 0.934 0.887 0.918 0.951 0.925 0.916 IMportin Beta family [Source:RefSeq peptide;Acc:NP_491477]
84. T23G7.5 pir-1 2816 7.368 0.957 0.920 0.909 0.920 0.862 0.907 0.951 0.942 Phosphatase Interacting with RNA/RNP [Source:RefSeq peptide;Acc:NP_495959]
85. C26E6.7 eri-9 8069 7.368 0.954 0.909 0.954 0.909 0.892 0.968 0.886 0.896 Enhanced RNAI (RNA interference) [Source:RefSeq peptide;Acc:NP_001293626]
86. C25D7.8 otub-1 7941 7.367 0.954 0.922 0.944 0.922 0.924 0.883 0.922 0.896 Ubiquitin thioesterase otubain-like [Source:UniProtKB/Swiss-Prot;Acc:Q9XVR6]
87. F48C1.6 F48C1.6 4064 7.367 0.969 0.912 0.899 0.912 0.932 0.943 0.904 0.896
88. C08B11.5 sap-49 10553 7.367 0.936 0.900 0.896 0.900 0.931 0.949 0.953 0.902 Splicing factor 3B subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09442]
89. T16G1.11 eif-3.K 14014 7.366 0.944 0.924 0.904 0.924 0.891 0.916 0.963 0.900 Eukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/Swiss-Prot;Acc:Q9XUP3]
90. Y73F8A.34 tag-349 7966 7.366 0.965 0.880 0.942 0.880 0.878 0.925 0.965 0.931
91. C13G5.2 C13G5.2 3532 7.365 0.953 0.880 0.947 0.880 0.896 0.940 0.923 0.946
92. F58D5.1 hrp-2 17211 7.365 0.956 0.908 0.896 0.908 0.916 0.921 0.936 0.924 human HnRNP A1 homolog [Source:RefSeq peptide;Acc:NP_493049]
93. Y18D10A.16 Y18D10A.16 2881 7.365 0.955 0.911 0.896 0.911 0.890 0.981 0.896 0.925
94. T01E8.6 mrps-14 9328 7.364 0.921 0.923 0.858 0.923 0.948 0.985 0.934 0.872 Probable 40S ribosomal protein S14, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P49391]
95. F43G9.9 cpn-1 14505 7.364 0.973 0.887 0.954 0.887 0.881 0.909 0.951 0.922 CalPoNin [Source:RefSeq peptide;Acc:NP_492339]
96. C03D6.4 npp-14 4889 7.363 0.934 0.922 0.957 0.922 0.927 0.877 0.900 0.924 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_492568]
97. T02G5.9 kars-1 9763 7.363 0.922 0.908 0.886 0.908 0.924 0.958 0.909 0.948 Lysine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:Q22099]
98. T20G5.11 rde-4 3966 7.363 0.963 0.898 0.955 0.898 0.878 0.914 0.908 0.949 RNA interference promoting factor; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EBF5]
99. F23B2.13 rpb-12 2738 7.363 0.945 0.916 0.915 0.916 0.911 0.968 0.874 0.918 RNA Polymerase II (B) subunit [Source:RefSeq peptide;Acc:NP_001294129]
100. Y37H2A.5 fbxa-210 2230 7.362 0.936 0.895 0.957 0.895 0.899 0.953 0.902 0.925 F-box A protein [Source:RefSeq peptide;Acc:NP_001256783]

There are 1456 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA