C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for F28B4.1

Gene ID Gene Name Reads Transcripts Annotation
F28B4.1 F28B4.1 0 F28B4.1

Genes with expression patterns similar to F28B4.1

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. F28B4.1 F28B4.1 0 6 1.000 - 1.000 - 1.000 1.000 1.000 1.000
2. H21P03.1 mbf-1 25586 5.627 0.916 - 0.924 - 0.956 0.960 0.914 0.957 MBF (multiprotein bridging factor) transcriptional coactivator [Source:RefSeq peptide;Acc:NP_502166]
3. R151.9 pfd-5 6951 5.616 0.918 - 0.885 - 0.968 0.967 0.923 0.955 Probable prefoldin subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q21993]
4. F54A3.3 cct-3 25183 5.608 0.896 - 0.939 - 0.954 0.966 0.908 0.945 T-complex protein 1 subunit gamma [Source:RefSeq peptide;Acc:NP_494218]
5. W08E3.3 ola-1 20885 5.594 0.903 - 0.929 - 0.965 0.966 0.872 0.959 Obg-like ATPase 1 [Source:UniProtKB/Swiss-Prot;Acc:P91917]
6. ZK863.6 dpy-30 16177 5.591 0.849 - 0.919 - 0.967 0.970 0.944 0.942 Dosage compensation protein dpy-30 [Source:UniProtKB/Swiss-Prot;Acc:Q10661]
7. B0205.11 mrpl-9 9162 5.582 0.917 - 0.925 - 0.972 0.962 0.923 0.883 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_492810]
8. C52E4.3 snr-4 19308 5.58 0.894 - 0.923 - 0.967 0.976 0.914 0.906 Probable small nuclear ribonucleoprotein Sm D2 [Source:UniProtKB/Swiss-Prot;Acc:Q18786]
9. C07G2.3 cct-5 44703 5.568 0.884 - 0.929 - 0.923 0.967 0.923 0.942 T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:P47209]
10. Y37E3.9 phb-1 29211 5.568 0.912 - 0.942 - 0.952 0.954 0.892 0.916 Mitochondrial prohibitin complex protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BKU4]
11. ZK637.3 lnkn-1 16095 5.568 0.889 - 0.924 - 0.939 0.941 0.923 0.952 Putative protein tag-256 [Source:RefSeq peptide;Acc:NP_498963]
12. C47E12.1 sars-1 4942 5.568 0.898 - 0.920 - 0.962 0.949 0.895 0.944 Probable serine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q18678]
13. T03F6.5 lis-1 8818 5.561 0.874 - 0.867 - 0.968 0.965 0.928 0.959 Lissencephaly-1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9NDC9]
14. ZK637.4 ZK637.4 356 5.558 0.873 - 0.902 - 0.948 0.951 0.939 0.945
15. T10B5.5 cct-7 24616 5.557 0.869 - 0.889 - 0.960 0.958 0.930 0.951 Chaperonin Containing TCP-1 [Source:RefSeq peptide;Acc:NP_503522]
16. F53G2.7 mnat-1 10966 5.54 0.863 - 0.932 - 0.963 0.946 0.886 0.950 MNAT (menage a trois) TFIIH subunit [Source:RefSeq peptide;Acc:NP_494280]
17. C08F8.1 pfd-1 10199 5.535 0.907 - 0.880 - 0.948 0.957 0.888 0.955 Probable prefoldin subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q17827]
18. M01B12.3 arx-7 7584 5.535 0.887 - 0.882 - 0.962 0.968 0.886 0.950 Actin-related protein 2/3 complex subunit 5 [Source:RefSeq peptide;Acc:NP_491099]
19. F08F8.3 kap-1 31437 5.535 0.906 - 0.911 - 0.932 0.948 0.885 0.953 Kinesin-Associated Protein [Source:RefSeq peptide;Acc:NP_001021246]
20. Y71F9AL.16 arx-1 7692 5.534 0.906 - 0.910 - 0.935 0.972 0.859 0.952 Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9N4I0]
21. Y55F3AR.3 cct-8 17979 5.531 0.896 - 0.920 - 0.888 0.933 0.934 0.960 T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q9N358]
22. H20J04.5 pfd-2 8082 5.529 0.892 - 0.904 - 0.956 0.958 0.881 0.938 Prefoldin subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9N5M2]
23. T26A5.9 dlc-1 59038 5.516 0.872 - 0.885 - 0.929 0.968 0.907 0.955 Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]
24. R74.1 lars-1 8467 5.516 0.890 - 0.935 - 0.960 0.965 0.818 0.948 Leucine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:Q09996]
25. F38A5.1 odr-8 5283 5.504 0.873 - 0.863 - 0.967 0.977 0.872 0.952 Ufm1-specific protease [Source:UniProtKB/Swiss-Prot;Acc:Q94218]
26. C23H5.11 C23H5.11 166 5.502 0.918 - 0.876 - 0.945 0.956 0.905 0.902
27. T20D4.3 T20D4.3 0 5.502 0.857 - 0.872 - 0.956 0.963 0.897 0.957
28. R07E5.10 pdcd-2 5211 5.498 0.939 - 0.903 - 0.940 0.917 0.842 0.957 Vacuolar ATPase assembly integral membrane protein VMA21 homolog [Source:UniProtKB/Swiss-Prot;Acc:A5JYQ9]
29. B0261.4 mrpl-47 8210 5.496 0.911 - 0.900 - 0.967 0.923 0.877 0.918 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_001040632]
30. T23G11.10 T23G11.10 0 5.495 0.900 - 0.860 - 0.952 0.982 0.877 0.924
31. T24F1.1 raga-1 16171 5.494 0.880 - 0.855 - 0.925 0.971 0.910 0.953 RAs-related GTP-binding protein A [Source:RefSeq peptide;Acc:NP_496415]
32. F47D12.4 hmg-1.2 13779 5.49 0.885 - 0.893 - 0.937 0.951 0.857 0.967 High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390]
33. B0303.15 mrpl-11 9889 5.485 0.896 - 0.915 - 0.955 0.928 0.902 0.889 Probable 39S ribosomal protein L11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34264]
34. Y48G10A.1 Y48G10A.1 1683 5.482 0.880 - 0.936 - 0.955 0.967 0.838 0.906
35. M01F1.6 mrpl-35 3508 5.481 0.933 - 0.914 - 0.950 0.902 0.878 0.904 Probable 39S ribosomal protein L35, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q21454]
36. B0280.3 rpia-1 10802 5.48 0.904 - 0.914 - 0.914 0.985 0.920 0.843 Probable-ribose 5-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:P41994]
37. Y54E10BR.5 Y54E10BR.5 10734 5.479 0.854 - 0.933 - 0.959 0.923 0.872 0.938 Signal peptidase complex catalytic subunit SEC11 [Source:RefSeq peptide;Acc:NP_491092]
38. F33D4.8 mrps-24 2853 5.479 0.907 - 0.894 - 0.953 0.933 0.887 0.905 28S ribosomal protein S24, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q688C0]
39. ZK550.4 ZK550.4 5815 5.478 0.855 - 0.944 - 0.965 0.943 0.849 0.922 TFIIE-alpha protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EG49]
40. T05C12.7 cct-1 41264 5.475 0.858 - 0.893 - 0.946 0.960 0.867 0.951 T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P41988]
41. T09B9.1 T09B9.1 848 5.473 0.907 - 0.856 - 0.947 0.914 0.892 0.957
42. C18H9.5 C18H9.5 0 5.468 0.894 - 0.865 - 0.962 0.961 0.882 0.904
43. T03F1.2 coq-4 3093 5.467 0.909 - 0.898 - 0.929 0.958 0.839 0.934 Ubiquinone biosynthesis protein coq-4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P91428]
44. M88.5 zbp-1 11851 5.467 0.851 - 0.903 - 0.950 0.927 0.882 0.954 Zipcode Binding Protein homolog [Source:RefSeq peptide;Acc:NP_001022695]
45. Y62E10A.11 mdt-9 5971 5.466 0.906 - 0.886 - 0.950 0.920 0.896 0.908 MeDiaTor [Source:RefSeq peptide;Acc:NP_001255737]
46. R07B7.3 pqn-53 10459 5.465 0.897 - 0.913 - 0.927 0.956 0.843 0.929 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_506023]
47. F13G3.4 dylt-1 21345 5.465 0.905 - 0.911 - 0.959 0.948 0.848 0.894 DYnein Light chain (Tctex type) [Source:RefSeq peptide;Acc:NP_492063]
48. B0491.t1 B0491.t1 0 5.465 0.837 - 0.937 - 0.915 0.960 0.921 0.895
49. ZC410.2 mppb-1 3991 5.464 0.901 - 0.880 - 0.953 0.959 0.880 0.891 Mitochondrial Processing Peptidase Beta [Source:RefSeq peptide;Acc:NP_501576]
50. K07F5.16 K07F5.16 0 5.463 0.901 - 0.918 - 0.951 0.914 0.868 0.911
51. T13H5.5 mrps-18B 3430 5.463 0.867 - 0.935 - 0.953 0.933 0.881 0.894 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_495800]
52. Y54G2A.31 ubc-13 22367 5.46 0.862 - 0.911 - 0.926 0.966 0.894 0.901 Ubiquitin-conjugating enzyme E2 13 [Source:UniProtKB/Swiss-Prot;Acc:Q95XX0]
53. F22B5.9 fars-3 7209 5.46 0.895 - 0.958 - 0.940 0.905 0.866 0.896 Phenylalanine--tRNA ligase beta subunit [Source:UniProtKB/Swiss-Prot;Acc:Q19713]
54. C33A12.4 C33A12.4 2111 5.459 0.884 - 0.897 - 0.962 0.946 0.833 0.937
55. K11B4.2 K11B4.2 190 5.459 0.916 - 0.915 - 0.923 0.951 0.824 0.930 Protein MEF2BNB homolog [Source:UniProtKB/Swiss-Prot;Acc:O45685]
56. R07H5.3 nuaf-3 3107 5.457 0.926 - 0.914 - 0.913 0.951 0.874 0.879 NADH:Ubiquinone oxidoreductase Assembly Factor [Source:RefSeq peptide;Acc:NP_001023328]
57. ZK418.6 ZK418.6 862 5.455 0.874 - 0.880 - 0.908 0.956 0.922 0.915
58. R03E9.2 R03E9.2 0 5.454 0.902 - 0.949 - 0.900 0.885 0.853 0.965
59. F17C11.9 eef-1G 37911 5.453 0.894 - 0.929 - 0.957 0.891 0.838 0.944 Probable elongation factor 1-gamma [Source:UniProtKB/Swiss-Prot;Acc:P54412]
60. Y22D7AL.5 hsp-60 42542 5.453 0.873 - 0.957 - 0.928 0.901 0.867 0.927 Chaperonin homolog Hsp-60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P50140]
61. C35D10.16 arx-6 8242 5.453 0.868 - 0.859 - 0.954 0.936 0.885 0.951 Probable actin-related protein 2/3 complex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:P58798]
62. F26H11.2 nurf-1 13015 5.45 0.835 - 0.891 - 0.956 0.948 0.888 0.932 Nucleosome-remodeling factor subunit NURF301-like [Source:UniProtKB/Swiss-Prot;Acc:Q6BER5]
63. T01E8.6 mrps-14 9328 5.45 0.906 - 0.955 - 0.948 0.902 0.865 0.874 Probable 40S ribosomal protein S14, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P49391]
64. E04A4.7 cyc-2.1 233997 5.45 0.916 - 0.886 - 0.927 0.879 0.888 0.954 Cytochrome c 2.1 [Source:UniProtKB/Swiss-Prot;Acc:P19974]
65. F28H1.3 aars-2 13537 5.448 0.868 - 0.895 - 0.957 0.947 0.882 0.899 Alanine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O01541]
66. Y54G11A.10 lin-7 6552 5.445 0.897 - 0.934 - 0.868 0.966 0.856 0.924
67. C14H10.1 C14H10.1 9903 5.445 0.855 - 0.885 - 0.924 0.960 0.863 0.958
68. F36H1.2 kdin-1 6118 5.445 0.885 - 0.958 - 0.914 0.950 0.836 0.902 KiDINs220 (vertebrate scaffold protein) homolog [Source:RefSeq peptide;Acc:NP_001040942]
69. F01F1.8 cct-6 29460 5.444 0.848 - 0.921 - 0.918 0.917 0.887 0.953 T-complex protein 1 subunit zeta [Source:UniProtKB/Swiss-Prot;Acc:P46550]
70. Y50D7A.9 taco-1 5949 5.442 0.912 - 0.949 - 0.961 0.908 0.864 0.848 Translational Activator of Cytochrome c Oxidase [Source:RefSeq peptide;Acc:NP_497183]
71. E04D5.2 E04D5.2 0 5.439 0.853 - 0.880 - 0.962 0.937 0.883 0.924
72. K07D4.3 rpn-11 8834 5.429 0.849 - 0.825 - 0.957 0.979 0.902 0.917 26S proteasome non-ATPase regulatory subunit 14 [Source:UniProtKB/Swiss-Prot;Acc:O76577]
73. W02F12.5 dlst-1 55841 5.428 0.907 - 0.948 - 0.904 0.892 0.818 0.959 DihydroLipoamide S-SuccinylTransferase [Source:RefSeq peptide;Acc:NP_504700]
74. F25H5.6 mrpl-54 2630 5.427 0.932 - 0.888 - 0.950 0.897 0.887 0.873 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_492455]
75. F58E10.3 ddx-17 15107 5.425 0.853 - 0.889 - 0.951 0.922 0.924 0.886 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_001041134]
76. W06H3.3 ctps-1 8363 5.424 0.906 - 0.908 - 0.952 0.917 0.881 0.860 CTP synthase [Source:RefSeq peptide;Acc:NP_507243]
77. F29C12.4 gfm-1 8964 5.423 0.888 - 0.931 - 0.958 0.951 0.823 0.872 Elongation factor G, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XV52]
78. K07C5.1 arx-2 20142 5.423 0.879 - 0.871 - 0.932 0.968 0.853 0.920 Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P53489]
79. Y79H2A.6 arx-3 17398 5.422 0.855 - 0.882 - 0.937 0.948 0.841 0.959 ARp2/3 compleX component [Source:RefSeq peptide;Acc:NP_499570]
80. R12E2.12 mrps-6 4708 5.421 0.881 - 0.928 - 0.951 0.913 0.896 0.852 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_491318]
81. E01A2.2 E01A2.2 12356 5.421 0.855 - 0.871 - 0.930 0.957 0.881 0.927 Serrate RNA effector molecule homolog [Source:UniProtKB/Swiss-Prot;Acc:Q966L5]
82. K07A1.13 K07A1.13 1847 5.42 0.903 - 0.917 - 0.941 0.957 0.814 0.888
83. R11D1.9 mrpl-49 2191 5.419 0.895 - 0.909 - 0.965 0.896 0.870 0.884 Probable 39S ribosomal protein L49, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q21939]
84. Y49A3A.1 cept-2 8916 5.419 0.817 - 0.822 - 0.940 0.970 0.898 0.972 Choline/EthanolaminePhosphoTransferase [Source:RefSeq peptide;Acc:NP_506558]
85. T01B7.3 rab-21 2347 5.418 0.898 - 0.900 - 0.950 0.953 0.850 0.867 RAB family [Source:RefSeq peptide;Acc:NP_495854]
86. Y32H12A.4 szy-2 7927 5.418 0.842 - 0.867 - 0.950 0.936 0.886 0.937 Suppressor of ZYg-1 [Source:RefSeq peptide;Acc:NP_498147]
87. T05F1.1 nra-2 7101 5.418 0.869 - 0.888 - 0.951 0.940 0.857 0.913 Nicalin [Source:RefSeq peptide;Acc:NP_492553]
88. F40A3.4 F40A3.4 200 5.418 0.868 - 0.887 - 0.946 0.979 0.829 0.909
89. K08E7.1 eak-7 18960 5.417 0.846 - 0.828 - 0.960 0.973 0.886 0.924 Enhancer of AKt-1 null [Source:RefSeq peptide;Acc:NP_502405]
90. Y54G9A.9 Y54G9A.9 1248 5.417 0.885 - 0.910 - 0.954 0.937 0.886 0.845
91. F44G4.2 F44G4.2 21103 5.413 0.868 - 0.871 - 0.957 0.940 0.884 0.893 Probable NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q20412]
92. H15N14.1 adr-1 3227 5.411 0.871 - 0.851 - 0.956 0.949 0.844 0.940 Adenosine Deaminase acting on RNA [Source:RefSeq peptide;Acc:NP_492153]
93. K08E7.4 K08E7.4 501 5.409 0.881 - 0.898 - 0.951 0.939 0.790 0.950
94. C30C11.1 mrpl-32 5238 5.408 0.889 - 0.909 - 0.952 0.923 0.862 0.873 Probable 39S ribosomal protein L32, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q04907]
95. D2005.3 D2005.3 2986 5.408 0.840 - 0.869 - 0.949 0.959 0.858 0.933
96. B0285.1 cdk-12 5900 5.407 0.867 - 0.879 - 0.933 0.967 0.814 0.947 Cyclin-dependent kinase 12 [Source:UniProtKB/Swiss-Prot;Acc:P46551]
97. Y62E10A.3 Y62E10A.3 531 5.407 0.897 - 0.826 - 0.946 0.958 0.817 0.963
98. F56B3.8 mrpl-2 3195 5.406 0.866 - 0.907 - 0.954 0.915 0.885 0.879 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_499987]
99. W04B5.4 mrpl-30 4938 5.404 0.874 - 0.927 - 0.954 0.902 0.884 0.863 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_497550]
100. ZK1128.8 vps-29 5118 5.402 0.861 - 0.834 - 0.948 0.970 0.852 0.937 Vacuolar protein sorting-associated protein 29 [Source:RefSeq peptide;Acc:NP_001022987]

There are 217 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA