C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for B0280.3

Gene ID Gene Name Reads Transcripts Annotation
B0280.3 rpia-1 10802 B0280.3.1, B0280.3.2 Probable-ribose 5-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:P41994]

Genes with expression patterns similar to B0280.3

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. B0280.3 rpia-1 10802 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Probable-ribose 5-phosphate isomerase [Source:UniProtKB/Swiss-Prot;Acc:P41994]
2. C08F8.1 pfd-1 10199 7.523 0.958 0.949 0.921 0.949 0.965 0.949 0.944 0.888 Probable prefoldin subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q17827]
3. C07G2.3 cct-5 44703 7.521 0.940 0.940 0.951 0.940 0.975 0.961 0.930 0.884 T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:P47209]
4. Y47D3A.16 rsks-1 16858 7.519 0.934 0.951 0.945 0.951 0.959 0.941 0.882 0.956 Ribosomal protein S6 kinase [Source:RefSeq peptide;Acc:NP_499447]
5. T05C12.7 cct-1 41264 7.516 0.926 0.944 0.953 0.944 0.978 0.952 0.924 0.895 T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P41988]
6. ZK652.9 coq-5 5143 7.506 0.937 0.962 0.969 0.962 0.955 0.940 0.906 0.875 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34666]
7. ZK863.6 dpy-30 16177 7.498 0.919 0.948 0.963 0.948 0.956 0.958 0.959 0.847 Dosage compensation protein dpy-30 [Source:UniProtKB/Swiss-Prot;Acc:Q10661]
8. B0205.11 mrpl-9 9162 7.496 0.926 0.946 0.958 0.946 0.945 0.951 0.968 0.856 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_492810]
9. C52E4.3 snr-4 19308 7.492 0.930 0.943 0.947 0.943 0.948 0.958 0.938 0.885 Probable small nuclear ribonucleoprotein Sm D2 [Source:UniProtKB/Swiss-Prot;Acc:Q18786]
10. T24F1.1 raga-1 16171 7.49 0.956 0.939 0.939 0.939 0.953 0.978 0.956 0.830 RAs-related GTP-binding protein A [Source:RefSeq peptide;Acc:NP_496415]
11. H21P03.1 mbf-1 25586 7.487 0.931 0.958 0.968 0.958 0.942 0.950 0.929 0.851 MBF (multiprotein bridging factor) transcriptional coactivator [Source:RefSeq peptide;Acc:NP_502166]
12. Y62E10A.1 rla-2 59665 7.46 0.921 0.972 0.952 0.972 0.946 0.936 0.906 0.855 Ribosomal protein, Large subunit, Acidic (P1) [Source:RefSeq peptide;Acc:NP_502571]
13. T03F1.2 coq-4 3093 7.459 0.959 0.931 0.935 0.931 0.951 0.950 0.935 0.867 Ubiquinone biosynthesis protein coq-4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P91428]
14. F01F1.8 cct-6 29460 7.458 0.913 0.946 0.940 0.946 0.976 0.907 0.924 0.906 T-complex protein 1 subunit zeta [Source:UniProtKB/Swiss-Prot;Acc:P46550]
15. F54A3.3 cct-3 25183 7.457 0.911 0.931 0.945 0.931 0.956 0.953 0.945 0.885 T-complex protein 1 subunit gamma [Source:RefSeq peptide;Acc:NP_494218]
16. ZK1058.4 ccdc-47 8879 7.449 0.915 0.944 0.949 0.944 0.949 0.953 0.929 0.866 CCDC (human Coiled Coil Domain Containing) homolog [Source:RefSeq peptide;Acc:NP_497788]
17. W08E3.3 ola-1 20885 7.449 0.918 0.943 0.958 0.943 0.933 0.956 0.941 0.857 Obg-like ATPase 1 [Source:UniProtKB/Swiss-Prot;Acc:P91917]
18. B0336.9 swp-1 52442 7.447 0.929 0.957 0.965 0.957 0.958 0.903 0.897 0.881 splicing factor (Suppressor of White aPricot) related [Source:RefSeq peptide;Acc:NP_001021121]
19. K05C4.11 sol-2 16560 7.441 0.933 0.951 0.972 0.951 0.953 0.949 0.888 0.844 Suppressor Of Lurcher movement defect [Source:RefSeq peptide;Acc:NP_493560]
20. T10B5.5 cct-7 24616 7.431 0.879 0.943 0.928 0.943 0.947 0.936 0.962 0.893 Chaperonin Containing TCP-1 [Source:RefSeq peptide;Acc:NP_503522]
21. R74.1 lars-1 8467 7.424 0.925 0.960 0.934 0.960 0.931 0.955 0.894 0.865 Leucine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:Q09996]
22. Y73B6BL.32 lsm-8 11002 7.42 0.937 0.939 0.946 0.939 0.956 0.917 0.940 0.846 LSM Sm-like protein [Source:RefSeq peptide;Acc:NP_500964]
23. Y106G6A.5 dsbn-1 7130 7.418 0.921 0.937 0.903 0.937 0.980 0.975 0.927 0.838 Dysbindin protein homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9XWQ1]
24. C55A6.2 ttll-5 5158 7.417 0.922 0.943 0.944 0.943 0.948 0.953 0.940 0.824 Tubulin Tyrosine Ligase Like [Source:RefSeq peptide;Acc:NP_001256332]
25. ZK637.3 lnkn-1 16095 7.417 0.904 0.951 0.960 0.951 0.958 0.943 0.910 0.840 Putative protein tag-256 [Source:RefSeq peptide;Acc:NP_498963]
26. Y56A3A.19 Y56A3A.19 9680 7.412 0.909 0.966 0.919 0.966 0.928 0.913 0.954 0.857 Acyl carrier protein [Source:RefSeq peptide;Acc:NP_499549]
27. Y39A1C.3 cey-4 50694 7.411 0.919 0.950 0.965 0.950 0.920 0.929 0.905 0.873 C. Elegans Y-box [Source:RefSeq peptide;Acc:NP_499393]
28. B0303.15 mrpl-11 9889 7.411 0.935 0.943 0.959 0.943 0.941 0.919 0.950 0.821 Probable 39S ribosomal protein L11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34264]
29. B0285.1 cdk-12 5900 7.407 0.911 0.919 0.931 0.919 0.965 0.965 0.897 0.900 Cyclin-dependent kinase 12 [Source:UniProtKB/Swiss-Prot;Acc:P46551]
30. T06G6.9 pfd-3 10945 7.407 0.911 0.940 0.948 0.940 0.976 0.917 0.924 0.851 Probable prefoldin subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:O18054]
31. Y55F3AR.3 cct-8 17979 7.407 0.925 0.909 0.938 0.909 0.962 0.922 0.958 0.884 T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q9N358]
32. T21B10.1 mrpl-50 14595 7.406 0.905 0.935 0.951 0.935 0.963 0.910 0.932 0.875 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_495899]
33. K07D4.3 rpn-11 8834 7.401 0.894 0.928 0.906 0.928 0.971 0.982 0.928 0.864 26S proteasome non-ATPase regulatory subunit 14 [Source:UniProtKB/Swiss-Prot;Acc:O76577]
34. T21B10.7 cct-2 13999 7.399 0.913 0.929 0.919 0.929 0.971 0.916 0.940 0.882 T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:P47207]
35. F53A3.3 rps-22 81093 7.396 0.893 0.960 0.947 0.960 0.946 0.903 0.925 0.862 Ribosomal Protein, Small subunit [Source:RefSeq peptide;Acc:NP_497481]
36. F26F4.11 rpb-8 7601 7.394 0.950 0.946 0.953 0.946 0.932 0.887 0.957 0.823 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Source:UniProtKB/Swiss-Prot;Acc:Q19826]
37. M01B12.3 arx-7 7584 7.394 0.943 0.916 0.927 0.916 0.932 0.972 0.935 0.853 Actin-related protein 2/3 complex subunit 5 [Source:RefSeq peptide;Acc:NP_491099]
38. W02D3.2 dhod-1 3816 7.392 0.948 0.952 0.944 0.952 0.970 0.979 0.834 0.813 Dihydroorotate dehydrogenase (quinone), mitochondrial [Source:RefSeq peptide;Acc:NP_491930]
39. D2023.5 mpst-1 10328 7.387 0.944 0.931 0.967 0.931 0.938 0.879 0.934 0.863 Putative thiosulfate sulfurtransferase mpst-1 [Source:UniProtKB/Swiss-Prot;Acc:O17730]
40. F08F8.3 kap-1 31437 7.387 0.942 0.942 0.955 0.942 0.925 0.931 0.897 0.853 Kinesin-Associated Protein [Source:RefSeq peptide;Acc:NP_001021246]
41. F13G3.4 dylt-1 21345 7.385 0.925 0.960 0.942 0.960 0.938 0.944 0.880 0.836 DYnein Light chain (Tctex type) [Source:RefSeq peptide;Acc:NP_492063]
42. C09D4.5 rpl-19 56944 7.384 0.892 0.965 0.967 0.965 0.915 0.903 0.898 0.879 60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:O02639]
43. K07C5.1 arx-2 20142 7.383 0.942 0.936 0.933 0.936 0.968 0.974 0.866 0.828 Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P53489]
44. T08B2.9 fars-1 12650 7.381 0.937 0.957 0.957 0.957 0.934 0.913 0.894 0.832 Phenylalanyl Amino-acyl tRNA Synthetase [Source:RefSeq peptide;Acc:NP_491792]
45. Y24F12A.2 ragc-1 3950 7.377 0.925 0.932 0.961 0.932 0.952 0.897 0.909 0.869 RAs-related GTP binding protein C homolog [Source:RefSeq peptide;Acc:NP_001293887]
46. T08B2.10 rps-17 38071 7.376 0.923 0.947 0.929 0.947 0.951 0.905 0.900 0.874 40S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:O01692]
47. T26A5.9 dlc-1 59038 7.376 0.922 0.936 0.954 0.936 0.933 0.968 0.882 0.845 Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]
48. F25H5.4 eef-2 34846 7.374 0.930 0.958 0.939 0.958 0.919 0.868 0.901 0.901 Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:P29691]
49. K04D7.2 mspn-1 48187 7.374 0.914 0.939 0.968 0.939 0.923 0.902 0.901 0.888 Mitochondrial sorting homolog [Source:UniProtKB/Swiss-Prot;Acc:P54815]
50. B0261.4 mrpl-47 8210 7.367 0.903 0.935 0.966 0.935 0.922 0.906 0.919 0.881 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_001040632]
51. Y57G11C.16 rps-18 76576 7.367 0.912 0.954 0.925 0.954 0.944 0.903 0.915 0.860 Ribosomal Protein, Small subunit [Source:RefSeq peptide;Acc:NP_502794]
52. Y54G11A.10 lin-7 6552 7.367 0.942 0.930 0.922 0.930 0.850 0.969 0.914 0.910
53. Y40G12A.1 ubh-3 4142 7.367 0.937 0.928 0.950 0.928 0.923 0.920 0.911 0.870 Ubiquitin carboxyl-terminal hydrolase [Source:RefSeq peptide;Acc:NP_504653]
54. Y62E10A.11 mdt-9 5971 7.366 0.935 0.934 0.941 0.934 0.932 0.912 0.960 0.818 MeDiaTor [Source:RefSeq peptide;Acc:NP_001255737]
55. R06A4.4 imb-2 10302 7.363 0.904 0.922 0.899 0.922 0.958 0.936 0.934 0.888 IMportin Beta family [Source:RefSeq peptide;Acc:NP_496987]
56. E01A2.2 E01A2.2 12356 7.363 0.927 0.930 0.942 0.930 0.911 0.950 0.883 0.890 Serrate RNA effector molecule homolog [Source:UniProtKB/Swiss-Prot;Acc:Q966L5]
57. F59E12.11 sam-4 8179 7.362 0.904 0.922 0.954 0.922 0.943 0.927 0.939 0.851
58. F28H1.3 aars-2 13537 7.361 0.918 0.944 0.952 0.944 0.910 0.929 0.933 0.831 Alanine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:O01541]
59. T19C3.8 fem-2 9225 7.36 0.912 0.929 0.913 0.929 0.947 0.956 0.954 0.820 Ca(2+)/calmodulin-dependent protein kinase phosphatase [Source:UniProtKB/Swiss-Prot;Acc:P49594]
60. F17C11.9 eef-1G 37911 7.357 0.910 0.967 0.949 0.967 0.918 0.867 0.892 0.887 Probable elongation factor 1-gamma [Source:UniProtKB/Swiss-Prot;Acc:P54412]
61. F10G8.6 nubp-1 3262 7.354 0.944 0.903 0.949 0.903 0.963 0.916 0.892 0.884 Cytosolic Fe-S cluster assembly factor NUBP1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93459]
62. R151.9 pfd-5 6951 7.352 0.934 0.889 0.930 0.889 0.928 0.958 0.947 0.877 Probable prefoldin subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q21993]
63. W06H3.3 ctps-1 8363 7.351 0.928 0.926 0.939 0.926 0.939 0.900 0.961 0.832 CTP synthase [Source:RefSeq peptide;Acc:NP_507243]
64. ZK546.13 mdt-4 4080 7.35 0.927 0.932 0.895 0.932 0.950 0.955 0.890 0.869 Mediator of RNA polymerase II transcription subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q23523]
65. Y54G2A.31 ubc-13 22367 7.35 0.914 0.944 0.939 0.944 0.936 0.963 0.913 0.797 Ubiquitin-conjugating enzyme E2 13 [Source:UniProtKB/Swiss-Prot;Acc:Q95XX0]
66. ZK742.1 xpo-1 20741 7.349 0.876 0.936 0.952 0.936 0.951 0.898 0.962 0.838 eXPOrtin (nuclear export receptor) [Source:RefSeq peptide;Acc:NP_741567]
67. K08E7.1 eak-7 18960 7.347 0.911 0.919 0.900 0.919 0.932 0.972 0.931 0.863 Enhancer of AKt-1 null [Source:RefSeq peptide;Acc:NP_502405]
68. T01E8.6 mrps-14 9328 7.347 0.934 0.948 0.962 0.948 0.919 0.897 0.925 0.814 Probable 40S ribosomal protein S14, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P49391]
69. F53G2.7 mnat-1 10966 7.347 0.866 0.937 0.951 0.937 0.951 0.930 0.909 0.866 MNAT (menage a trois) TFIIH subunit [Source:RefSeq peptide;Acc:NP_494280]
70. F56B3.8 mrpl-2 3195 7.346 0.934 0.922 0.954 0.922 0.931 0.889 0.955 0.839 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_499987]
71. K11H3.6 mrpl-36 7328 7.346 0.946 0.932 0.930 0.932 0.936 0.879 0.954 0.837 Ribosomal protein [Source:RefSeq peptide;Acc:NP_001022680]
72. ZK1128.8 vps-29 5118 7.345 0.940 0.916 0.904 0.916 0.918 0.963 0.891 0.897 Vacuolar protein sorting-associated protein 29 [Source:RefSeq peptide;Acc:NP_001022987]
73. F56F3.5 rps-1 85503 7.338 0.880 0.960 0.943 0.960 0.921 0.920 0.885 0.869 40S ribosomal protein S3a [Source:UniProtKB/Swiss-Prot;Acc:P48154]
74. F38A5.1 odr-8 5283 7.337 0.934 0.944 0.913 0.944 0.911 0.970 0.918 0.803 Ufm1-specific protease [Source:UniProtKB/Swiss-Prot;Acc:Q94218]
75. R07B7.3 pqn-53 10459 7.336 0.917 0.928 0.960 0.928 0.934 0.953 0.878 0.838 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_506023]
76. W06E11.4 sbds-1 6701 7.335 0.905 0.933 0.950 0.933 0.942 0.881 0.956 0.835 Ribosome maturation protein SBDS [Source:UniProtKB/Swiss-Prot;Acc:Q23202]
77. B0280.1 ggtb-1 3076 7.334 0.930 0.924 0.860 0.924 0.959 0.912 0.932 0.893 Probable geranylgeranyl transferase type-2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:P41992]
78. C47B2.9 C47B2.9 4096 7.33 0.929 0.946 0.953 0.946 0.916 0.903 0.942 0.795
79. T16G1.11 eif-3.K 14014 7.33 0.941 0.948 0.952 0.948 0.904 0.895 0.895 0.847 Eukaryotic translation initiation factor 3 subunit K [Source:UniProtKB/Swiss-Prot;Acc:Q9XUP3]
80. F33D4.8 mrps-24 2853 7.329 0.922 0.926 0.958 0.926 0.911 0.928 0.934 0.824 28S ribosomal protein S24, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q688C0]
81. F43G6.9 patr-1 23000 7.327 0.847 0.920 0.894 0.920 0.961 0.977 0.943 0.865 Protein PAT1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q20374]
82. F58E10.3 ddx-17 15107 7.327 0.908 0.937 0.950 0.937 0.899 0.898 0.949 0.849 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_001041134]
83. R07E5.10 pdcd-2 5211 7.326 0.943 0.928 0.948 0.928 0.957 0.921 0.822 0.879 Vacuolar ATPase assembly integral membrane protein VMA21 homolog [Source:UniProtKB/Swiss-Prot;Acc:A5JYQ9]
84. T24B8.1 rpl-32 67285 7.326 0.930 0.967 0.942 0.967 0.931 0.825 0.901 0.863 Ribosomal Protein, Large subunit [Source:RefSeq peptide;Acc:NP_001254195]
85. T03F6.5 lis-1 8818 7.322 0.922 0.915 0.910 0.915 0.933 0.960 0.931 0.836 Lissencephaly-1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9NDC9]
86. T02G5.9 kars-1 9763 7.321 0.952 0.952 0.944 0.952 0.920 0.871 0.909 0.821 Lysine--tRNA ligase [Source:UniProtKB/Swiss-Prot;Acc:Q22099]
87. D1046.1 cfim-2 4266 7.319 0.912 0.885 0.916 0.885 0.944 0.946 0.963 0.868 Cleavage Factor IM (CFIm) homolog [Source:RefSeq peptide;Acc:NP_001255355]
88. B0432.3 mrpl-41 5514 7.319 0.941 0.907 0.930 0.907 0.913 0.890 0.957 0.874 39S ribosomal protein L41, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P90993]
89. K04D7.1 rack-1 48949 7.317 0.891 0.943 0.959 0.943 0.920 0.872 0.913 0.876 Guanine nucleotide-binding protein subunit beta-2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q21215]
90. D1007.12 rpl-24.1 73724 7.317 0.864 0.943 0.932 0.943 0.955 0.910 0.905 0.865 60S ribosomal protein L24 [Source:UniProtKB/Swiss-Prot;Acc:O01868]
91. C05D11.10 mrps-17 4613 7.316 0.941 0.924 0.952 0.924 0.911 0.877 0.925 0.862 28S ribosomal protein S17, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q11189]
92. R12E2.13 R12E2.13 5695 7.311 0.894 0.912 0.924 0.912 0.910 0.975 0.881 0.903
93. C18E9.3 szy-20 6819 7.308 0.923 0.921 0.928 0.921 0.939 0.913 0.954 0.809 Suppressor of ZYg-1 [Source:RefSeq peptide;Acc:NP_495909]
94. F08F8.9 F08F8.9 4441 7.307 0.909 0.910 0.956 0.910 0.934 0.921 0.899 0.868
95. F43G9.5 cfim-1 9169 7.307 0.923 0.919 0.919 0.919 0.955 0.909 0.922 0.841 Cleavage Factor IM (CFIm) homolog [Source:RefSeq peptide;Acc:NP_492334]
96. C30C11.1 mrpl-32 5238 7.306 0.919 0.916 0.965 0.916 0.927 0.901 0.927 0.835 Probable 39S ribosomal protein L32, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q04907]
97. M88.5 zbp-1 11851 7.305 0.893 0.912 0.935 0.912 0.957 0.914 0.923 0.859 Zipcode Binding Protein homolog [Source:RefSeq peptide;Acc:NP_001022695]
98. F26F4.7 nhl-2 13541 7.302 0.874 0.920 0.937 0.920 0.948 0.868 0.951 0.884 NHL (ring finger b-box coiled coil) domain containing [Source:RefSeq peptide;Acc:NP_498026]
99. R12E2.12 mrps-6 4708 7.301 0.890 0.913 0.922 0.913 0.918 0.912 0.954 0.879 Mitochondrial Ribosomal Protein, Small [Source:RefSeq peptide;Acc:NP_491318]
100. ZK265.9 fitm-2 8255 7.3 0.949 0.949 0.960 0.949 0.920 0.918 0.839 0.816 FIT family protein fitm-2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CZ37]

There are 499 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA