C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for Y39A1B.3

Gene ID Gene Name Reads Transcripts Annotation
Y39A1B.3 dpy-28 4459 Y39A1B.3 Condensin complex subunit 1 [Source:RefSeq peptide;Acc:NP_499379]

Genes with expression patterns similar to Y39A1B.3

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. Y39A1B.3 dpy-28 4459 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Condensin complex subunit 1 [Source:RefSeq peptide;Acc:NP_499379]
2. F18E2.3 scc-3 13464 7.702 0.946 0.967 0.962 0.967 0.974 0.984 0.964 0.938 Cohesin subunit scc-3 [Source:UniProtKB/Swiss-Prot;Acc:Q19555]
3. Y55D9A.1 efa-6 10012 7.662 0.966 0.968 0.955 0.968 0.959 0.972 0.973 0.901 Exchange Factor for Arf [Source:RefSeq peptide;Acc:NP_502417]
4. F16D3.2 rsd-6 8211 7.658 0.976 0.980 0.960 0.980 0.966 0.980 0.957 0.859
5. F25B5.2 nop-1 4127 7.657 0.944 0.975 0.962 0.975 0.987 0.963 0.942 0.909 Pseudocleavage protein nop-1 [Source:UniProtKB/Swiss-Prot;Acc:Q09314]
6. F52C9.8 pqe-1 7546 7.651 0.940 0.965 0.966 0.965 0.965 0.971 0.938 0.941 Putative RNA exonuclease pqe-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10124]
7. T10F2.3 ulp-1 8351 7.648 0.936 0.974 0.968 0.974 0.961 0.966 0.972 0.897 Sentrin-specific protease [Source:UniProtKB/Swiss-Prot;Acc:Q09353]
8. C26E6.5 fsn-1 6615 7.646 0.949 0.967 0.969 0.967 0.972 0.985 0.940 0.897 F-box/SPRY domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q18223]
9. T04A8.14 emb-5 11746 7.645 0.948 0.975 0.955 0.975 0.967 0.947 0.948 0.930 Suppressor of Ty 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34703]
10. T17E9.1 kin-18 8172 7.643 0.949 0.935 0.972 0.935 0.956 0.973 0.961 0.962 Serine/threonine-protein kinase SULU [Source:UniProtKB/Swiss-Prot;Acc:P46549]
11. T23B12.4 natc-1 7759 7.639 0.957 0.972 0.955 0.972 0.975 0.943 0.965 0.900 N-alpha-AcetylTransferase C complex subunit [Source:RefSeq peptide;Acc:NP_505179]
12. C09G9.6 oma-1 18743 7.638 0.969 0.958 0.976 0.958 0.972 0.964 0.943 0.898
13. W01B6.9 ndc-80 4670 7.635 0.925 0.973 0.966 0.973 0.978 0.985 0.952 0.883 Kinetochore protein ndc-80 [Source:UniProtKB/Swiss-Prot;Acc:Q17635]
14. F12F6.3 rib-1 10524 7.635 0.975 0.966 0.969 0.966 0.954 0.951 0.946 0.908 Multiple exostoses homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:O01704]
15. T09A5.8 cec-3 5813 7.632 0.964 0.976 0.960 0.976 0.975 0.971 0.920 0.890 Chromo domain-containing protein cec-3 [Source:UniProtKB/Swiss-Prot;Acc:P45968]
16. F35G12.8 smc-4 6202 7.628 0.935 0.972 0.957 0.972 0.968 0.983 0.936 0.905 Structural maintenance of chromosomes protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q20060]
17. ZK1098.8 mut-7 4940 7.618 0.951 0.964 0.955 0.964 0.989 0.955 0.913 0.927 Exonuclease mut-7 [Source:UniProtKB/Swiss-Prot;Acc:P34607]
18. C36B1.8 gls-1 8617 7.617 0.948 0.958 0.953 0.958 0.973 0.950 0.957 0.920 Germline survival defective-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8I4M5]
19. R07G3.3 npp-21 3792 7.607 0.939 0.955 0.934 0.955 0.978 0.986 0.944 0.916 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_741024]
20. T01C3.1 cdt-2 5193 7.601 0.972 0.948 0.966 0.948 0.985 0.963 0.942 0.877 CDT (S. pombe CDC10 Dependent Transcript) homolog [Source:RefSeq peptide;Acc:NP_506685]
21. F17C11.10 F17C11.10 4355 7.599 0.929 0.976 0.916 0.976 0.974 0.972 0.950 0.906
22. T24F1.2 samp-1 8422 7.599 0.957 0.955 0.963 0.955 0.982 0.955 0.937 0.895 Spindle Associated Membrane Protein homolog [Source:RefSeq peptide;Acc:NP_496416]
23. Y54E2A.3 tac-1 6308 7.599 0.945 0.970 0.951 0.970 0.984 0.957 0.900 0.922 TACC (transforming acid coiled coil) protein family [Source:RefSeq peptide;Acc:NP_497059]
24. F56D1.4 clr-1 8615 7.597 0.971 0.967 0.962 0.967 0.970 0.965 0.933 0.862 Receptor-type tyrosine-protein phosphatase [Source:UniProtKB/Swiss-Prot;Acc:H2KZM6]
25. C13B4.2 usp-14 9000 7.596 0.953 0.968 0.978 0.968 0.968 0.936 0.928 0.897 Ubiquitin carboxyl-terminal hydrolase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q17361]
26. F11A10.1 lex-1 13720 7.593 0.973 0.972 0.976 0.972 0.956 0.958 0.939 0.847 Tat-binding homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:P54816]
27. F19F10.12 F19F10.12 2474 7.593 0.934 0.966 0.954 0.966 0.944 0.954 0.941 0.934
28. T23G7.5 pir-1 2816 7.591 0.933 0.957 0.978 0.957 0.974 0.953 0.924 0.915 Phosphatase Interacting with RNA/RNP [Source:RefSeq peptide;Acc:NP_495959]
29. D2089.1 rsp-7 11057 7.591 0.917 0.957 0.947 0.957 0.968 0.980 0.969 0.896 Probable splicing factor, arginine/serine-rich 7 [Source:UniProtKB/Swiss-Prot;Acc:O01159]
30. F32H2.4 thoc-3 3861 7.589 0.937 0.973 0.948 0.973 0.979 0.929 0.923 0.927 THO Complex (transcription factor/nuclear export) subunit [Source:RefSeq peptide;Acc:NP_492416]
31. T07F8.3 gld-3 9324 7.589 0.944 0.975 0.971 0.975 0.983 0.989 0.872 0.880 Defective in germ line development protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q95ZK7]
32. Y11D7A.12 flh-1 4612 7.589 0.949 0.960 0.977 0.960 0.974 0.956 0.956 0.857 FLYWCH zinc finger transcription factor homolog [Source:RefSeq peptide;Acc:NP_501618]
33. F36D4.3 hum-2 16493 7.588 0.945 0.968 0.970 0.968 0.959 0.957 0.927 0.894 Heavy chain, Unconventional Myosin [Source:RefSeq peptide;Acc:NP_505433]
34. T07A9.6 daf-18 15998 7.588 0.955 0.943 0.972 0.943 0.955 0.961 0.967 0.892 DAF-18; DAF-18 protein; PTEN phosphatidylinositol 3' phosphatase homolog DAF-18; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EE01]
35. C18G1.5 hil-4 21692 7.585 0.961 0.979 0.964 0.979 0.968 0.957 0.935 0.842 Histone H1.4 [Source:UniProtKB/Swiss-Prot;Acc:O17536]
36. K07C5.8 cash-1 10523 7.585 0.934 0.986 0.909 0.986 0.961 0.965 0.954 0.890 CKA And Striatin Homolog [Source:RefSeq peptide;Acc:NP_505664]
37. C05C8.4 gei-6 6026 7.584 0.913 0.962 0.950 0.962 0.964 0.991 0.949 0.893 GEX Interacting protein [Source:RefSeq peptide;Acc:NP_504836]
38. ZK858.1 gld-4 14162 7.582 0.929 0.969 0.958 0.969 0.974 0.968 0.940 0.875 Poly(A) RNA polymerase gld-4 [Source:UniProtKB/Swiss-Prot;Acc:G5EFL0]
39. C09H10.6 nasp-1 6094 7.581 0.961 0.976 0.948 0.976 0.944 0.942 0.968 0.866 NASP (human Nuclear Autoantigenic Sperm Protein) homolog [Source:RefSeq peptide;Acc:NP_496380]
40. Y41E3.9 fcd-2 2268 7.581 0.943 0.941 0.979 0.941 0.975 0.949 0.941 0.912 human FANCD2 (Fanconi's anemia defect) ortholog [Source:RefSeq peptide;Acc:NP_001255848]
41. Y110A7A.10 aap-1 4134 7.577 0.952 0.971 0.953 0.971 0.955 0.941 0.897 0.937 phosphoinositide kinase AdAPter subunit [Source:RefSeq peptide;Acc:NP_491522]
42. F57C2.6 spat-1 5615 7.577 0.965 0.967 0.971 0.967 0.958 0.973 0.923 0.853 Suppressor of PAr-Two defect [Source:RefSeq peptide;Acc:NP_001254434]
43. D1007.7 nrd-1 6738 7.577 0.947 0.940 0.969 0.940 0.943 0.978 0.938 0.922 NRD (yeast Nuclear pre-mRNA Down-regulation) homolog [Source:RefSeq peptide;Acc:NP_491403]
44. D1022.7 aka-1 10681 7.577 0.964 0.974 0.967 0.974 0.938 0.943 0.939 0.878 A Kinase Anchor protein [Source:RefSeq peptide;Acc:NP_001022045]
45. Y73F8A.34 tag-349 7966 7.576 0.928 0.949 0.963 0.949 0.972 0.987 0.929 0.899
46. Y34D9A.4 spd-1 3396 7.575 0.957 0.956 0.927 0.956 0.978 0.967 0.939 0.895 SPD-1; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5ED58]
47. EEED8.7 rsp-4 13043 7.574 0.955 0.950 0.972 0.950 0.961 0.990 0.919 0.877 Probable splicing factor, arginine/serine-rich 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09511]
48. F32A5.1 ada-2 8343 7.574 0.930 0.965 0.967 0.965 0.968 0.967 0.937 0.875 ADA (histone acetyltransferase complex) subunit [Source:RefSeq peptide;Acc:NP_001022133]
49. T05C12.6 mig-5 5242 7.573 0.958 0.956 0.972 0.956 0.954 0.926 0.942 0.909 Cytoplasmic signalling transducer; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EC49]
50. C09G4.3 cks-1 17852 7.573 0.939 0.975 0.972 0.975 0.984 0.955 0.927 0.846 Cyclin-dependent kinases regulatory subunit [Source:UniProtKB/Swiss-Prot;Acc:Q17868]
51. T20F5.7 T20F5.7 5210 7.572 0.963 0.942 0.943 0.942 0.961 0.986 0.932 0.903
52. F35B12.5 sas-5 4606 7.572 0.976 0.962 0.970 0.962 0.944 0.958 0.931 0.869 Spindle assembly abnormal protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q20010]
53. T07D4.3 rha-1 5898 7.572 0.927 0.942 0.961 0.942 0.981 0.963 0.947 0.909 Probable ATP-dependent RNA helicase A [Source:UniProtKB/Swiss-Prot;Acc:Q22307]
54. C03D6.4 npp-14 4889 7.571 0.944 0.980 0.939 0.980 0.971 0.960 0.918 0.879 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_492568]
55. F12F6.5 srgp-1 9048 7.57 0.972 0.962 0.973 0.962 0.921 0.957 0.945 0.878 Slit-Robo GAP homolog [Source:RefSeq peptide;Acc:NP_001255567]
56. C27B7.1 spr-2 14958 7.57 0.940 0.976 0.961 0.976 0.959 0.913 0.907 0.938 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
57. Y47G6A.8 crn-1 3494 7.569 0.944 0.963 0.957 0.963 0.961 0.952 0.901 0.928 Flap endonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9N3T2]
58. K10B2.1 lin-23 15896 7.567 0.961 0.967 0.981 0.967 0.942 0.942 0.950 0.857 F-box/WD repeat-containing protein lin-23 [Source:UniProtKB/Swiss-Prot;Acc:Q09990]
59. C39E9.13 rfc-3 9443 7.565 0.906 0.969 0.970 0.969 0.974 0.960 0.918 0.899 RFC (DNA replication factor) family [Source:RefSeq peptide;Acc:NP_502517]
60. C29E4.2 kle-2 5527 7.564 0.937 0.975 0.925 0.975 0.962 0.989 0.938 0.863 Kleisin, abnormal closure, protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P34341]
61. M106.1 mix-1 7950 7.564 0.920 0.970 0.945 0.970 0.970 0.960 0.948 0.881 Mitotic chromosome and X-chromosome-associated protein mix-1 [Source:UniProtKB/Swiss-Prot;Acc:Q09591]
62. T21B10.5 set-17 5292 7.563 0.942 0.945 0.956 0.945 0.951 0.970 0.929 0.925 SET (trithorax/polycomb) domain containing [Source:RefSeq peptide;Acc:NP_495902]
63. B0464.9 B0464.9 2997 7.563 0.949 0.968 0.919 0.968 0.969 0.922 0.926 0.942 Probable protein phosphatase methylesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BIB3]
64. T26A5.7 set-1 6948 7.562 0.943 0.977 0.955 0.977 0.986 0.924 0.859 0.941 Probable histone-lysine N-methyltransferase set-1 [Source:UniProtKB/Swiss-Prot;Acc:Q22795]
65. F56A3.3 npp-6 5425 7.561 0.910 0.954 0.947 0.954 0.951 0.989 0.938 0.918 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_740844]
66. R02D3.5 fnta-1 5258 7.56 0.915 0.958 0.934 0.958 0.969 0.967 0.921 0.938 FarNesylTransferase, Alpha subunit [Source:RefSeq peptide;Acc:NP_499882]
67. F28B3.7 him-1 18274 7.56 0.929 0.954 0.939 0.954 0.989 0.952 0.915 0.928 Structural maintenance of chromosomes protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O01789]
68. B0205.1 B0205.1 2403 7.559 0.916 0.973 0.942 0.973 0.967 0.987 0.909 0.892
69. D1081.9 D1081.9 3792 7.559 0.911 0.946 0.944 0.946 0.990 0.992 0.944 0.886
70. R144.4 wip-1 14168 7.557 0.949 0.980 0.971 0.980 0.954 0.903 0.918 0.902 Wiskott-Aldrich syndrome protein (WASP)-Interacting Protein and gene assignment [Source:RefSeq peptide;Acc:NP_741123]
71. K12D12.1 top-2 18694 7.557 0.951 0.962 0.960 0.962 0.940 0.981 0.940 0.861 Probable DNA topoisomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q23670]
72. Y65B4BL.2 deps-1 18277 7.556 0.953 0.959 0.957 0.959 0.965 0.932 0.914 0.917
73. F58D5.4 ksr-2 5973 7.556 0.980 0.966 0.947 0.966 0.956 0.914 0.912 0.915 Kinase suppressor of Ras B [Source:UniProtKB/Swiss-Prot;Acc:G5EDA5]
74. F23B2.6 aly-2 7301 7.556 0.952 0.943 0.953 0.943 0.977 0.975 0.933 0.880 Ref/ALY RNA export adaptor family [Source:RefSeq peptide;Acc:NP_501594]
75. ZC404.9 gck-2 8382 7.554 0.921 0.975 0.946 0.975 0.974 0.964 0.929 0.870 Mitogen-activated protein kinase kinase kinase kinase [Source:RefSeq peptide;Acc:NP_504721]
76. T05F1.6 hsr-9 13312 7.554 0.931 0.973 0.933 0.973 0.973 0.968 0.933 0.870
77. F37E3.1 ncbp-1 5649 7.554 0.946 0.955 0.956 0.955 0.957 0.959 0.940 0.886 Nuclear cap-binding protein subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:O01763]
78. T01G9.4 npp-2 5361 7.553 0.905 0.971 0.932 0.971 0.972 0.966 0.947 0.889 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_492256]
79. D1081.8 cdc-5L 8553 7.553 0.964 0.972 0.960 0.972 0.962 0.938 0.883 0.902 Cell Division Cycle related [Source:RefSeq peptide;Acc:NP_492303]
80. Y2H9A.1 mes-4 3566 7.553 0.954 0.955 0.964 0.955 0.980 0.936 0.941 0.868 Histone-lysine N-methyltransferase mes-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9NH52]
81. Y53H1A.5 nfya-2 4166 7.552 0.954 0.928 0.956 0.928 0.980 0.983 0.926 0.897 Nuclear transcription Factor Y, A (alpha) subunit [Source:RefSeq peptide;Acc:NP_001251586]
82. Y71G12B.1 chaf-2 3451 7.548 0.963 0.956 0.938 0.956 0.970 0.955 0.934 0.876 CHromatin Assembly Factor [Source:RefSeq peptide;Acc:NP_490901]
83. K02F2.1 dpf-3 11465 7.548 0.947 0.978 0.951 0.978 0.963 0.971 0.954 0.806 Dipeptidyl Peptidase Four (IV) family [Source:RefSeq peptide;Acc:NP_491956]
84. F28D9.1 rsr-1 4282 7.548 0.912 0.963 0.946 0.963 0.972 0.980 0.943 0.869 SR protein related [Source:RefSeq peptide;Acc:NP_492875]
85. Y105E8A.17 ekl-4 4732 7.546 0.935 0.965 0.946 0.965 0.984 0.960 0.920 0.871
86. C10C6.6 catp-8 8079 7.546 0.959 0.966 0.939 0.966 0.970 0.935 0.941 0.870 Probable manganese-transporting ATPase C10C6.6 [Source:UniProtKB/Swiss-Prot;Acc:P90747]
87. T12D8.3 acbp-5 6816 7.545 0.924 0.967 0.963 0.967 0.971 0.961 0.903 0.889 Acyl-Coenzyme A Binding Protein [Source:RefSeq peptide;Acc:NP_499817]
88. T06D10.2 chaf-1 8121 7.545 0.939 0.970 0.956 0.970 0.960 0.966 0.956 0.828 CHromatin Assembly Factor [Source:RefSeq peptide;Acc:NP_492440]
89. C25H3.6 mdt-26 9423 7.545 0.949 0.942 0.975 0.942 0.987 0.980 0.934 0.836 MeDiaTor [Source:RefSeq peptide;Acc:NP_495108]
90. F36A2.13 ubr-5 9047 7.545 0.953 0.961 0.943 0.961 0.980 0.938 0.933 0.876 UBR E3 ubiquitin ligase homolog [Source:RefSeq peptide;Acc:NP_492389]
91. B0035.3 B0035.3 4118 7.545 0.946 0.980 0.940 0.980 0.962 0.939 0.878 0.920
92. T28F3.1 nra-1 7034 7.544 0.927 0.965 0.939 0.965 0.924 0.940 0.945 0.939 Nicotinic receptor-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XUB9]
93. C14B9.4 plk-1 18785 7.543 0.920 0.975 0.971 0.975 0.924 0.969 0.915 0.894 Serine/threonine-protein kinase plk-1 [Source:UniProtKB/Swiss-Prot;Acc:P34331]
94. F01G4.3 skih-2 3353 7.543 0.929 0.945 0.948 0.945 0.962 0.970 0.923 0.921 SKI (yeast SuperKIller) Helicase homolog [Source:RefSeq peptide;Acc:NP_502084]
95. E01A2.4 let-504 9788 7.543 0.903 0.966 0.934 0.966 0.987 0.963 0.918 0.906
96. C47D12.1 trr-1 4646 7.543 0.956 0.966 0.953 0.966 0.960 0.953 0.920 0.869 Transcription-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:G5EEV2]
97. F10C2.2 kup-1 3852 7.542 0.974 0.953 0.952 0.953 0.956 0.965 0.918 0.871
98. R11A8.7 R11A8.7 15531 7.542 0.935 0.975 0.915 0.975 0.958 0.952 0.934 0.898 Ankyrin repeat and KH domain-containing protein R11A8.7 [Source:UniProtKB/Swiss-Prot;Acc:Q21920]
99. T08A11.2 T08A11.2 12269 7.54 0.926 0.951 0.965 0.951 0.956 0.940 0.921 0.930
100. VC5.4 mys-1 3996 7.539 0.934 0.960 0.963 0.960 0.981 0.933 0.927 0.881 Histone acetyltransferase Tip60 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9TYU5]

There are 2482 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA