C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for C55A6.9

Gene ID Gene Name Reads Transcripts Annotation
C55A6.9 pafo-1 2328 C55A6.9 RNA polymerase II-associated factor 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:P90783]

Genes with expression patterns similar to C55A6.9

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. C55A6.9 pafo-1 2328 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RNA polymerase II-associated factor 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:P90783]
2. C17E4.10 C17E4.10 7034 7.613 0.980 0.954 0.964 0.954 0.959 0.972 0.958 0.872
3. C18G1.5 hil-4 21692 7.606 0.978 0.971 0.960 0.971 0.963 0.957 0.965 0.841 Histone H1.4 [Source:UniProtKB/Swiss-Prot;Acc:O17536]
4. C09G4.3 cks-1 17852 7.593 0.963 0.976 0.961 0.976 0.975 0.962 0.932 0.848 Cyclin-dependent kinases regulatory subunit [Source:UniProtKB/Swiss-Prot;Acc:Q17868]
5. Y11D7A.12 flh-1 4612 7.59 0.954 0.967 0.970 0.967 0.944 0.958 0.940 0.890 FLYWCH zinc finger transcription factor homolog [Source:RefSeq peptide;Acc:NP_501618]
6. Y73F8A.34 tag-349 7966 7.565 0.968 0.982 0.968 0.982 0.953 0.980 0.948 0.784
7. F44B9.4 cit-1.1 4631 7.563 0.918 0.966 0.964 0.966 0.966 0.958 0.925 0.900 Cyclin-T1.1 [Source:UniProtKB/Swiss-Prot;Acc:P34425]
8. T09A5.8 cec-3 5813 7.561 0.967 0.968 0.949 0.968 0.975 0.974 0.949 0.811 Chromo domain-containing protein cec-3 [Source:UniProtKB/Swiss-Prot;Acc:P45968]
9. T06D10.2 chaf-1 8121 7.561 0.978 0.972 0.948 0.972 0.928 0.969 0.917 0.877 CHromatin Assembly Factor [Source:RefSeq peptide;Acc:NP_492440]
10. T04A8.14 emb-5 11746 7.556 0.973 0.982 0.979 0.982 0.958 0.948 0.942 0.792 Suppressor of Ty 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34703]
11. F18E2.3 scc-3 13464 7.552 0.969 0.966 0.977 0.966 0.937 0.978 0.952 0.807 Cohesin subunit scc-3 [Source:UniProtKB/Swiss-Prot;Acc:Q19555]
12. Y71D11A.2 smr-1 4976 7.55 0.967 0.953 0.972 0.953 0.957 0.953 0.927 0.868 SMN (Survival of Motor Neuron protein) Related [Source:RefSeq peptide;Acc:NP_001022932]
13. Y47G6A.20 rnp-6 5542 7.55 0.942 0.977 0.949 0.977 0.958 0.974 0.954 0.819 RNP (RRM RNA binding domain) containing [Source:RefSeq peptide;Acc:NP_491177]
14. F36A2.13 ubr-5 9047 7.548 0.954 0.962 0.973 0.962 0.962 0.950 0.927 0.858 UBR E3 ubiquitin ligase homolog [Source:RefSeq peptide;Acc:NP_492389]
15. C03D6.4 npp-14 4889 7.548 0.965 0.976 0.943 0.976 0.969 0.965 0.909 0.845 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_492568]
16. F56A8.6 cpf-2 2730 7.547 0.926 0.976 0.954 0.976 0.966 0.976 0.959 0.814 Cleavage and Polyadenylation Factor [Source:RefSeq peptide;Acc:NP_499734]
17. C05C8.4 gei-6 6026 7.545 0.956 0.950 0.962 0.950 0.969 0.985 0.927 0.846 GEX Interacting protein [Source:RefSeq peptide;Acc:NP_504836]
18. W01B6.9 ndc-80 4670 7.545 0.962 0.970 0.962 0.970 0.953 0.976 0.909 0.843 Kinetochore protein ndc-80 [Source:UniProtKB/Swiss-Prot;Acc:Q17635]
19. T12D8.3 acbp-5 6816 7.542 0.959 0.971 0.958 0.971 0.967 0.965 0.921 0.830 Acyl-Coenzyme A Binding Protein [Source:RefSeq peptide;Acc:NP_499817]
20. Y65B4BL.2 deps-1 18277 7.541 0.980 0.969 0.973 0.969 0.971 0.936 0.960 0.783
21. F58B6.3 par-2 3914 7.538 0.943 0.971 0.971 0.971 0.920 0.976 0.938 0.848
22. C47D12.1 trr-1 4646 7.538 0.978 0.952 0.974 0.952 0.918 0.946 0.948 0.870 Transcription-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:G5EEV2]
23. F57B1.2 sun-1 5721 7.537 0.976 0.960 0.958 0.960 0.956 0.960 0.901 0.866 Sun domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q20924]
24. K08E3.8 mdt-29 4678 7.537 0.950 0.957 0.947 0.957 0.972 0.958 0.933 0.863 Mediator of RNA polymerase II transcription subunit 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9XUS2]
25. D2089.1 rsp-7 11057 7.536 0.962 0.965 0.964 0.965 0.944 0.984 0.901 0.851 Probable splicing factor, arginine/serine-rich 7 [Source:UniProtKB/Swiss-Prot;Acc:O01159]
26. F10C2.2 kup-1 3852 7.533 0.980 0.960 0.970 0.960 0.951 0.962 0.926 0.824
27. K02F2.1 dpf-3 11465 7.532 0.970 0.975 0.958 0.975 0.937 0.981 0.927 0.809 Dipeptidyl Peptidase Four (IV) family [Source:RefSeq peptide;Acc:NP_491956]
28. T27F2.1 skp-1 3532 7.532 0.966 0.964 0.949 0.964 0.956 0.934 0.952 0.847 mammalian SKIP (Ski interacting protein) homolog [Source:RefSeq peptide;Acc:NP_505950]
29. T10F2.4 prp-19 11298 7.529 0.935 0.970 0.950 0.970 0.969 0.969 0.921 0.845 Pre-mRNA-processing factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q10051]
30. T05F1.6 hsr-9 13312 7.529 0.961 0.975 0.961 0.975 0.935 0.967 0.934 0.821
31. T01G9.4 npp-2 5361 7.525 0.944 0.971 0.960 0.971 0.944 0.972 0.927 0.836 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_492256]
32. C26E6.5 fsn-1 6615 7.523 0.967 0.957 0.971 0.957 0.940 0.984 0.932 0.815 F-box/SPRY domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q18223]
33. D1081.8 cdc-5L 8553 7.523 0.985 0.972 0.966 0.972 0.950 0.936 0.948 0.794 Cell Division Cycle related [Source:RefSeq peptide;Acc:NP_492303]
34. B0025.2 csn-2 5205 7.521 0.932 0.972 0.963 0.972 0.985 0.962 0.920 0.815 COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O01422]
35. T21B10.4 T21B10.4 11648 7.521 0.973 0.926 0.962 0.926 0.980 0.959 0.957 0.838
36. E01A2.4 let-504 9788 7.521 0.948 0.967 0.950 0.967 0.972 0.977 0.911 0.829
37. F16D3.2 rsd-6 8211 7.52 0.963 0.979 0.978 0.979 0.920 0.981 0.923 0.797
38. F36D4.3 hum-2 16493 7.518 0.970 0.978 0.963 0.978 0.934 0.959 0.924 0.812 Heavy chain, Unconventional Myosin [Source:RefSeq peptide;Acc:NP_505433]
39. Y81G3A.3 gcn-2 5831 7.518 0.942 0.960 0.932 0.960 0.952 0.978 0.907 0.887 Eukaryotic translation initiation factor 2-alpha kinase gcn-2 [Source:UniProtKB/Swiss-Prot;Acc:D0Z5N4]
40. T20H4.4 adr-2 5495 7.518 0.954 0.983 0.964 0.983 0.906 0.985 0.951 0.792 Probable double-stranded RNA-specific adenosine deaminase [Source:UniProtKB/Swiss-Prot;Acc:Q22618]
41. T07F8.3 gld-3 9324 7.516 0.967 0.964 0.960 0.964 0.949 0.985 0.909 0.818 Defective in germ line development protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q95ZK7]
42. F23F1.1 nfyc-1 9983 7.512 0.965 0.979 0.964 0.979 0.958 0.927 0.943 0.797 Nuclear transcription Factor Y, C (gamma) subunit [Source:RefSeq peptide;Acc:NP_493645]
43. T23B12.4 natc-1 7759 7.511 0.975 0.956 0.968 0.956 0.936 0.957 0.926 0.837 N-alpha-AcetylTransferase C complex subunit [Source:RefSeq peptide;Acc:NP_505179]
44. B0334.5 B0334.5 4713 7.511 0.965 0.953 0.961 0.953 0.884 0.968 0.903 0.924
45. F37A4.8 isw-1 9337 7.509 0.972 0.982 0.974 0.982 0.917 0.969 0.902 0.811 Chromatin-remodeling complex ATPase chain isw-1 [Source:UniProtKB/Swiss-Prot;Acc:P41877]
46. C08B11.5 sap-49 10553 7.509 0.943 0.966 0.926 0.966 0.982 0.941 0.941 0.844 Splicing factor 3B subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09442]
47. R05H5.3 R05H5.3 15041 7.508 0.968 0.965 0.957 0.965 0.954 0.925 0.894 0.880
48. M106.1 mix-1 7950 7.507 0.943 0.965 0.972 0.965 0.918 0.965 0.909 0.870 Mitotic chromosome and X-chromosome-associated protein mix-1 [Source:UniProtKB/Swiss-Prot;Acc:Q09591]
49. C39E9.13 rfc-3 9443 7.504 0.967 0.971 0.964 0.971 0.968 0.966 0.939 0.758 RFC (DNA replication factor) family [Source:RefSeq peptide;Acc:NP_502517]
50. D1054.14 prp-38 6504 7.503 0.930 0.960 0.957 0.960 0.967 0.963 0.904 0.862 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_505762]
51. ZK1098.8 mut-7 4940 7.503 0.972 0.959 0.963 0.959 0.969 0.943 0.933 0.805 Exonuclease mut-7 [Source:UniProtKB/Swiss-Prot;Acc:P34607]
52. F32H2.4 thoc-3 3861 7.501 0.941 0.986 0.965 0.986 0.983 0.929 0.928 0.783 THO Complex (transcription factor/nuclear export) subunit [Source:RefSeq peptide;Acc:NP_492416]
53. C09H10.6 nasp-1 6094 7.501 0.973 0.967 0.953 0.967 0.919 0.944 0.939 0.839 NASP (human Nuclear Autoantigenic Sperm Protein) homolog [Source:RefSeq peptide;Acc:NP_496380]
54. T10C6.4 srx-44 8454 7.501 0.943 0.972 0.978 0.972 0.960 0.956 0.915 0.805 Serpentine Receptor, class X [Source:RefSeq peptide;Acc:NP_507023]
55. Y105E8A.17 ekl-4 4732 7.499 0.949 0.964 0.974 0.964 0.937 0.963 0.921 0.827
56. T23G7.5 pir-1 2816 7.499 0.958 0.967 0.965 0.967 0.936 0.955 0.920 0.831 Phosphatase Interacting with RNA/RNP [Source:RefSeq peptide;Acc:NP_495959]
57. Y113G7B.23 swsn-1 13766 7.498 0.964 0.972 0.956 0.972 0.937 0.945 0.944 0.808 SWI/SNF nucleosome remodeling complex component [Source:RefSeq peptide;Acc:NP_001256906]
58. C02B10.5 C02B10.5 9171 7.498 0.960 0.954 0.974 0.954 0.950 0.934 0.944 0.828
59. T20G5.11 rde-4 3966 7.498 0.951 0.961 0.954 0.961 0.956 0.979 0.942 0.794 RNA interference promoting factor; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EBF5]
60. F46F11.10 F46F11.10 968 7.497 0.958 0.950 0.979 0.950 0.910 0.978 0.935 0.837
61. F52C9.7 mog-3 9880 7.497 0.969 0.970 0.963 0.970 0.966 0.913 0.928 0.818 Masculinisation Of Germline [Source:RefSeq peptide;Acc:NP_498134]
62. T24F1.2 samp-1 8422 7.496 0.971 0.935 0.962 0.935 0.958 0.976 0.957 0.802 Spindle Associated Membrane Protein homolog [Source:RefSeq peptide;Acc:NP_496416]
63. W03F9.5 ttb-1 8682 7.494 0.951 0.963 0.979 0.963 0.919 0.982 0.882 0.855 Transcription initiation factor IIB [Source:UniProtKB/Swiss-Prot;Acc:O16991]
64. C53D5.6 imb-3 28921 7.494 0.906 0.955 0.933 0.955 0.958 0.973 0.925 0.889 IMportin Beta family [Source:RefSeq peptide;Acc:NP_490715]
65. ZK328.5 npp-10 7652 7.494 0.974 0.952 0.955 0.952 0.939 0.980 0.915 0.827 Nuclear pore complex protein Nup98-Nup96 Nuclear pore complex protein Nup98 Nuclear pore complex protein Nup96 [Source:UniProtKB/Swiss-Prot;Acc:G5EEH9]
66. Y43C5A.6 rad-51 5327 7.494 0.963 0.952 0.953 0.952 0.954 0.967 0.937 0.816 RAD51 short isoform; RecA/Rad51/Dmc1-like protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EGG8]
67. C43E11.1 acin-1 7781 7.493 0.940 0.962 0.948 0.962 0.966 0.973 0.963 0.779 ACINus (mammalian Apoptotic Chromatin condensation Inducer in the Nucleus) homolog [Source:RefSeq peptide;Acc:NP_491344]
68. R06A4.7 mes-2 2612 7.493 0.946 0.962 0.961 0.962 0.929 0.979 0.937 0.817 Histone-lysine N-methyltransferase mes-2 [Source:UniProtKB/Swiss-Prot;Acc:O17514]
69. C29E4.2 kle-2 5527 7.492 0.955 0.968 0.956 0.968 0.911 0.985 0.893 0.856 Kleisin, abnormal closure, protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P34341]
70. B0035.3 B0035.3 4118 7.492 0.979 0.968 0.968 0.968 0.961 0.943 0.932 0.773
71. Y110A7A.8 prp-31 4436 7.492 0.968 0.952 0.919 0.952 0.971 0.970 0.895 0.865 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_491527]
72. K02F3.11 rnp-5 6205 7.49 0.962 0.976 0.966 0.976 0.967 0.925 0.911 0.807 RNP (RRM RNA binding domain) containing [Source:RefSeq peptide;Acc:NP_497276]
73. F32E10.6 cec-5 10643 7.489 0.969 0.952 0.965 0.952 0.971 0.929 0.959 0.792 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_501232]
74. F32A5.1 ada-2 8343 7.488 0.969 0.969 0.965 0.969 0.924 0.979 0.929 0.784 ADA (histone acetyltransferase complex) subunit [Source:RefSeq peptide;Acc:NP_001022133]
75. Y71G12B.1 chaf-2 3451 7.486 0.980 0.977 0.938 0.977 0.940 0.957 0.923 0.794 CHromatin Assembly Factor [Source:RefSeq peptide;Acc:NP_490901]
76. C50C3.6 prp-8 19582 7.485 0.926 0.952 0.934 0.952 0.956 0.968 0.951 0.846 Pre-mRNA-splicing factor 8 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34369]
77. R151.8 R151.8 2527 7.485 0.945 0.955 0.897 0.955 0.953 0.973 0.925 0.882
78. R02D3.5 fnta-1 5258 7.485 0.956 0.965 0.974 0.965 0.942 0.969 0.930 0.784 FarNesylTransferase, Alpha subunit [Source:RefSeq peptide;Acc:NP_499882]
79. F28B3.7 him-1 18274 7.483 0.963 0.951 0.970 0.951 0.964 0.960 0.948 0.776 Structural maintenance of chromosomes protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O01789]
80. F31C3.3 F31C3.3 31153 7.48 0.961 0.946 0.939 0.946 0.918 0.985 0.934 0.851
81. F33H2.1 dog-1 2417 7.48 0.933 0.949 0.957 0.949 0.956 0.956 0.940 0.840 Deletions Of G-rich DNA [Source:RefSeq peptide;Acc:NP_493618]
82. Y38F2AR.1 eri-5 1443 7.479 0.977 0.951 0.884 0.951 0.961 0.971 0.930 0.854 Enhanced RNAI (RNA interference) [Source:RefSeq peptide;Acc:NP_500199]
83. ZK856.12 hpo-40 7855 7.479 0.941 0.928 0.969 0.928 0.981 0.959 0.930 0.843
84. T10F2.3 ulp-1 8351 7.479 0.970 0.950 0.964 0.950 0.926 0.968 0.928 0.823 Sentrin-specific protease [Source:UniProtKB/Swiss-Prot;Acc:Q09353]
85. ZC395.8 ztf-8 5521 7.478 0.948 0.960 0.975 0.960 0.961 0.972 0.894 0.808 Zinc finger putative Transcription Factor family [Source:RefSeq peptide;Acc:NP_498124]
86. ZK1127.4 ZK1127.4 3088 7.477 0.945 0.944 0.949 0.944 0.968 0.950 0.947 0.830 Protein BCCIP homolog [Source:UniProtKB/Swiss-Prot;Acc:Q23402]
87. Y54G9A.6 bub-3 9123 7.477 0.959 0.977 0.956 0.977 0.921 0.938 0.867 0.882 yeast BUB homolog [Source:RefSeq peptide;Acc:NP_496879]
88. B0546.2 otub-4 2466 7.476 0.963 0.957 0.948 0.957 0.962 0.935 0.905 0.849 OTUBain deubiquitylating protease homolog [Source:RefSeq peptide;Acc:NP_500333]
89. C06E7.1 sams-3 26921 7.475 0.914 0.966 0.929 0.966 0.952 0.963 0.943 0.842 Probable S-adenosylmethionine synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:P50305]
90. F33H1.4 F33H1.4 2447 7.474 0.908 0.956 0.976 0.956 0.976 0.963 0.905 0.834
91. T01C3.1 cdt-2 5193 7.473 0.954 0.931 0.949 0.931 0.969 0.957 0.933 0.849 CDT (S. pombe CDC10 Dependent Transcript) homolog [Source:RefSeq peptide;Acc:NP_506685]
92. Y71F9B.16 dnj-30 4262 7.472 0.906 0.959 0.957 0.959 0.929 0.959 0.946 0.857 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_001293377]
93. ZK858.1 gld-4 14162 7.47 0.959 0.961 0.964 0.961 0.960 0.981 0.953 0.731 Poly(A) RNA polymerase gld-4 [Source:UniProtKB/Swiss-Prot;Acc:G5EFL0]
94. C08B11.6 arp-6 4646 7.47 0.952 0.932 0.919 0.932 0.951 0.977 0.953 0.854 Actin-like protein C08B11.6 [Source:UniProtKB/Swiss-Prot;Acc:Q09443]
95. H31G24.4 cyb-2.2 14285 7.468 0.935 0.934 0.909 0.934 0.924 0.975 0.955 0.902 CYclin B [Source:RefSeq peptide;Acc:NP_491297]
96. C27B7.1 spr-2 14958 7.468 0.969 0.971 0.972 0.971 0.965 0.915 0.931 0.774 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
97. F23B2.6 aly-2 7301 7.468 0.957 0.954 0.922 0.954 0.959 0.979 0.937 0.806 Ref/ALY RNA export adaptor family [Source:RefSeq peptide;Acc:NP_501594]
98. F36F2.3 rbpl-1 15376 7.468 0.888 0.953 0.956 0.953 0.967 0.982 0.923 0.846 Retinoblastoma Binding Protein Like [Source:RefSeq peptide;Acc:NP_001032975]
99. F56D1.7 daz-1 23684 7.468 0.939 0.947 0.969 0.947 0.964 0.962 0.913 0.827 DAZ protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q20870]
100. F41E6.4 smk-1 22394 7.467 0.953 0.953 0.972 0.953 0.920 0.973 0.920 0.823 SMEK (Dictyostelium Suppressor of MEK null) homolog [Source:RefSeq peptide;Acc:NP_001023911]

There are 2893 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA