C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for T04H1.4

Gene ID Gene Name Reads Transcripts Annotation
T04H1.4 rad-50 2736 T04H1.4a.1, T04H1.4a.2, T04H1.4b.1, T04H1.4b.2 DNA repair protein rad-50 [Source:UniProtKB/Swiss-Prot;Acc:O44199]

Genes with expression patterns similar to T04H1.4

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. T04H1.4 rad-50 2736 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DNA repair protein rad-50 [Source:UniProtKB/Swiss-Prot;Acc:O44199]
2. F56C9.6 F56C9.6 4303 7.624 0.915 0.950 0.956 0.950 0.967 0.945 0.964 0.977
3. Y38E10A.6 ceh-100 5505 7.612 0.932 0.962 0.977 0.962 0.931 0.974 0.978 0.896 C. Elegans Homeobox [Source:RefSeq peptide;Acc:NP_001022428]
4. K08E7.3 let-99 6791 7.591 0.909 0.954 0.919 0.954 0.988 0.947 0.983 0.937
5. R05D11.5 R05D11.5 2074 7.588 0.925 0.937 0.936 0.937 0.960 0.972 0.979 0.942
6. R05D3.11 met-2 3364 7.586 0.922 0.962 0.942 0.962 0.928 0.935 0.958 0.977 Histone-lysine N-methyltransferase met-2 [Source:UniProtKB/Swiss-Prot;Acc:P34544]
7. F09E8.3 msh-5 2136 7.586 0.941 0.917 0.946 0.917 0.967 0.972 0.967 0.959 MutS protein homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:Q19272]
8. C04H5.6 mog-4 4517 7.584 0.953 0.947 0.903 0.947 0.941 0.984 0.954 0.955 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 [Source:UniProtKB/Swiss-Prot;Acc:O45244]
9. B0464.2 ctr-9 7610 7.582 0.959 0.931 0.966 0.931 0.945 0.960 0.950 0.940 RNA polymerase-associated protein CTR9 [Source:UniProtKB/Swiss-Prot;Acc:Q03560]
10. F56D2.6 ddx-15 12282 7.569 0.929 0.970 0.927 0.970 0.951 0.948 0.958 0.916 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Source:UniProtKB/Swiss-Prot;Acc:Q20875]
11. Y71G12B.9 lin-65 7476 7.569 0.951 0.965 0.925 0.965 0.920 0.969 0.952 0.922 LIN-65L; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q95XN0]
12. Y38A8.3 ulp-2 7403 7.564 0.941 0.955 0.921 0.955 0.928 0.960 0.946 0.958 Ubiquitin-Like Protease [Source:RefSeq peptide;Acc:NP_494914]
13. R12C12.2 ran-5 14517 7.564 0.914 0.954 0.922 0.954 0.955 0.947 0.962 0.956 associated with RAN (nuclear import/export) function [Source:RefSeq peptide;Acc:NP_495208]
14. C46A5.9 hcf-1 6295 7.562 0.905 0.978 0.946 0.978 0.940 0.971 0.927 0.917 human HCF1 related [Source:RefSeq peptide;Acc:NP_501279]
15. C05C8.6 hpo-9 8263 7.556 0.927 0.964 0.968 0.964 0.932 0.918 0.926 0.957
16. T25G3.3 T25G3.3 7285 7.555 0.912 0.965 0.955 0.965 0.943 0.945 0.918 0.952
17. Y39G10AR.13 icp-1 3445 7.55 0.916 0.938 0.923 0.938 0.967 0.952 0.972 0.944 InCenP homolog [Source:RefSeq peptide;Acc:NP_001293363]
18. Y37H2A.5 fbxa-210 2230 7.547 0.911 0.945 0.942 0.945 0.926 0.950 0.946 0.982 F-box A protein [Source:RefSeq peptide;Acc:NP_001256783]
19. T23H2.1 npp-12 12425 7.541 0.930 0.944 0.920 0.944 0.957 0.947 0.946 0.953 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491855]
20. C13G5.2 C13G5.2 3532 7.541 0.938 0.946 0.930 0.946 0.945 0.963 0.919 0.954
21. F18C5.2 wrn-1 3792 7.54 0.927 0.948 0.938 0.948 0.936 0.976 0.953 0.914 Probable Werner syndrome ATP-dependent helicase homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q19546]
22. F30F8.3 gras-1 5902 7.54 0.895 0.960 0.930 0.960 0.946 0.951 0.955 0.943 GRASP (General Receptor for phosphoinositides 1-Associated Scaffold Protein) homolog [Source:RefSeq peptide;Acc:NP_492164]
23. Y17G7B.5 mcm-2 6246 7.538 0.926 0.940 0.961 0.940 0.929 0.934 0.951 0.957 DNA helicase [Source:RefSeq peptide;Acc:NP_001022416]
24. C27B7.1 spr-2 14958 7.536 0.900 0.958 0.947 0.958 0.936 0.930 0.936 0.971 Suppressor of presenilin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q18240]
25. ZK328.2 eftu-2 7040 7.536 0.945 0.949 0.917 0.949 0.933 0.957 0.971 0.915 Elongation Factor TU family [Source:RefSeq peptide;Acc:NP_498308]
26. F01F1.7 ddx-23 4217 7.536 0.959 0.953 0.883 0.953 0.897 0.973 0.979 0.939 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_498260]
27. T07G12.6 zim-1 1330 7.535 0.900 0.951 0.962 0.951 0.929 0.950 0.945 0.947 Zinc finger In Meiosis [Source:RefSeq peptide;Acc:NP_501948]
28. Y46G5A.4 snrp-200 13827 7.532 0.940 0.955 0.935 0.955 0.890 0.962 0.948 0.947 Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Source:UniProtKB/Swiss-Prot;Acc:Q9U2G0]
29. ZK686.4 snu-23 9040 7.53 0.925 0.945 0.932 0.945 0.941 0.935 0.972 0.935 Putative zinc finger protein ZK686.4 [Source:RefSeq peptide;Acc:NP_498692]
30. C14A4.4 crn-3 6558 7.529 0.909 0.963 0.877 0.963 0.957 0.971 0.985 0.904 Cell-death-Related Nuclease [Source:RefSeq peptide;Acc:NP_871964]
31. H20J04.2 athp-2 5149 7.528 0.922 0.965 0.973 0.965 0.860 0.952 0.932 0.959 AT Hook plus PHD finger transcription factor [Source:RefSeq peptide;Acc:NP_494767]
32. ZK973.2 cec-10 7108 7.526 0.943 0.953 0.908 0.953 0.969 0.938 0.936 0.926 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_491360]
33. Y53C12B.3 nos-3 20231 7.526 0.906 0.963 0.922 0.963 0.941 0.968 0.962 0.901 NanOS related [Source:RefSeq peptide;Acc:NP_496101]
34. F58D5.4 ksr-2 5973 7.521 0.909 0.960 0.949 0.960 0.930 0.918 0.940 0.955 Kinase suppressor of Ras B [Source:UniProtKB/Swiss-Prot;Acc:G5EDA5]
35. Y18D10A.1 attf-6 6942 7.517 0.957 0.957 0.918 0.957 0.920 0.974 0.919 0.915 AT hook Transcription Factor family [Source:RefSeq peptide;Acc:NP_871800]
36. D1054.15 plrg-1 2282 7.514 0.919 0.929 0.939 0.929 0.931 0.964 0.962 0.941 PLeiotropic ReGulator (vertebrate) homolog [Source:RefSeq peptide;Acc:NP_001256260]
37. Y80D3A.2 emb-4 3717 7.514 0.906 0.954 0.918 0.954 0.936 0.941 0.976 0.929
38. Y39G10AR.7 ekl-7 7072 7.512 0.908 0.953 0.945 0.953 0.929 0.961 0.908 0.955
39. F43G9.9 cpn-1 14505 7.51 0.882 0.944 0.948 0.944 0.956 0.944 0.931 0.961 CalPoNin [Source:RefSeq peptide;Acc:NP_492339]
40. T26A5.5 jhdm-1 12698 7.509 0.966 0.941 0.936 0.941 0.909 0.972 0.940 0.904 JmjC domain-containing histone demethylation protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q95Q98]
41. C02B10.5 C02B10.5 9171 7.508 0.901 0.958 0.943 0.958 0.936 0.933 0.938 0.941
42. Y65B4BL.2 deps-1 18277 7.508 0.946 0.954 0.929 0.954 0.910 0.943 0.920 0.952
43. ZK507.6 cya-1 6807 7.507 0.898 0.957 0.961 0.957 0.929 0.933 0.927 0.945 G2/mitotic-specific cyclin-A1 [Source:UniProtKB/Swiss-Prot;Acc:P34638]
44. Y41D4B.19 npp-8 12992 7.506 0.941 0.957 0.923 0.957 0.914 0.949 0.938 0.927 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_500102]
45. F48E8.3 F48E8.3 4186 7.506 0.945 0.924 0.930 0.924 0.946 0.968 0.976 0.893
46. C33H5.15 sgo-1 3674 7.503 0.919 0.932 0.943 0.932 0.937 0.930 0.940 0.970 Shugoshin [Source:UniProtKB/Swiss-Prot;Acc:Q18412]
47. K02F2.4 ulp-5 3433 7.502 0.856 0.939 0.955 0.939 0.967 0.944 0.951 0.951 Ubiquitin-Like Protease [Source:RefSeq peptide;Acc:NP_491952]
48. M03C11.2 chl-1 1035 7.502 0.905 0.930 0.936 0.930 0.942 0.980 0.933 0.946 ATP-dependent RNA helicase chl-1 [Source:UniProtKB/Swiss-Prot;Acc:Q21489]
49. B0035.3 B0035.3 4118 7.501 0.925 0.934 0.932 0.934 0.952 0.898 0.960 0.966
50. Y17G7A.1 hmg-12 29989 7.501 0.928 0.952 0.896 0.952 0.944 0.941 0.924 0.964 HMG [Source:RefSeq peptide;Acc:NP_496544]
51. Y37A1B.1 lst-3 10739 7.499 0.935 0.964 0.879 0.964 0.917 0.947 0.956 0.937 Lateral Signaling Target [Source:RefSeq peptide;Acc:NP_001255780]
52. F58G11.5 tag-65 3259 7.498 0.923 0.937 0.953 0.937 0.948 0.937 0.953 0.910 SR-related CTD associated factor 6; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5ED97]
53. F45E12.2 brf-1 4667 7.498 0.954 0.957 0.948 0.957 0.873 0.954 0.927 0.928 BRF (transcription factor) homolog [Source:RefSeq peptide;Acc:NP_495526]
54. B0001.8 B0001.8 1978 7.498 0.909 0.948 0.938 0.948 0.946 0.977 0.941 0.891
55. F10E9.7 F10E9.7 1842 7.497 0.923 0.923 0.938 0.923 0.924 0.983 0.980 0.903
56. T28D9.2 rsp-5 6460 7.496 0.913 0.943 0.944 0.943 0.919 0.957 0.950 0.927 Probable splicing factor, arginine/serine-rich 5 [Source:UniProtKB/Swiss-Prot;Acc:Q10021]
57. C16C10.6 ccdc-55 3581 7.489 0.970 0.935 0.947 0.935 0.908 0.908 0.959 0.927 Nuclear speckle splicing regulatory protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q09252]
58. C06A5.1 inst-1 5068 7.488 0.906 0.954 0.949 0.954 0.941 0.937 0.935 0.912 INtegrator complex SubuniT 1 homolog [Source:RefSeq peptide;Acc:NP_491739]
59. T13F2.7 sna-2 4771 7.488 0.945 0.956 0.949 0.956 0.887 0.932 0.925 0.938 Small Nuclear RNA (snRNA) Associated protein [Source:RefSeq peptide;Acc:NP_501744]
60. C55B7.5 uri-1 3156 7.486 0.924 0.951 0.964 0.951 0.919 0.927 0.947 0.903 URI (Unconventional prefoldin RPB5 Interactor) homolog [Source:RefSeq peptide;Acc:NP_491870]
61. Y37D8A.9 mrg-1 14369 7.485 0.929 0.954 0.928 0.954 0.927 0.947 0.942 0.904 human MRG (Mortality factor-Related Gene) related [Source:RefSeq peptide;Acc:NP_499675]
62. ZK353.1 cyy-1 5745 7.485 0.899 0.950 0.931 0.950 0.943 0.956 0.949 0.907 Cyclin-Y [Source:UniProtKB/Swiss-Prot;Acc:P34624]
63. F32E10.6 cec-5 10643 7.482 0.934 0.930 0.942 0.930 0.915 0.970 0.946 0.915 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_501232]
64. T23B5.1 prmt-3 10677 7.478 0.920 0.929 0.938 0.929 0.926 0.905 0.990 0.941 PRotein arginine MethylTransferase [Source:RefSeq peptide;Acc:NP_001040990]
65. F59E10.1 orc-2 4698 7.478 0.892 0.947 0.921 0.947 0.944 0.964 0.976 0.887 Origin recognition complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q21037]
66. Y56A3A.17 npp-16 5391 7.476 0.912 0.939 0.934 0.939 0.871 0.969 0.964 0.948 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_499550]
67. Y37D8A.11 cec-7 8801 7.475 0.906 0.954 0.925 0.954 0.916 0.952 0.923 0.945 C.Elegans Chromodomain protein [Source:RefSeq peptide;Acc:NP_001022828]
68. F32H2.1 snpc-4 7581 7.474 0.924 0.929 0.937 0.929 0.955 0.952 0.950 0.898 snRNA-activating protein complex subunit 4 homolog [Source:UniProtKB/Swiss-Prot;Acc:P91868]
69. C26E6.7 eri-9 8069 7.474 0.916 0.955 0.968 0.955 0.914 0.940 0.909 0.917 Enhanced RNAI (RNA interference) [Source:RefSeq peptide;Acc:NP_001293626]
70. F59E12.2 zyg-1 1718 7.473 0.932 0.935 0.888 0.935 0.914 0.976 0.950 0.943 Probable serine/threonine-protein kinase zyg-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9GT24]
71. F25B3.6 rtfo-1 11965 7.471 0.917 0.938 0.944 0.938 0.935 0.933 0.962 0.904 RNA polymerase-associated protein RTF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:G5EBY0]
72. C08B11.2 hda-2 2313 7.469 0.946 0.942 0.892 0.942 0.931 0.961 0.946 0.909 Putative histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q09440]
73. C03D6.5 asfl-1 1678 7.469 0.920 0.927 0.920 0.927 0.965 0.951 0.925 0.934 Probable histone chaperone asf-1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q17603]
74. T09A5.10 lin-5 3600 7.469 0.904 0.923 0.926 0.923 0.954 0.939 0.940 0.960 Spindle apparatus protein lin-5 [Source:UniProtKB/Swiss-Prot;Acc:P45970]
75. F33H2.5 pole-1 3734 7.469 0.912 0.901 0.945 0.901 0.941 0.964 0.941 0.964 DNA polymerase [Source:RefSeq peptide;Acc:NP_493616]
76. F23F1.1 nfyc-1 9983 7.467 0.942 0.939 0.921 0.939 0.902 0.935 0.938 0.951 Nuclear transcription Factor Y, C (gamma) subunit [Source:RefSeq peptide;Acc:NP_493645]
77. F08B4.5 pole-2 8234 7.465 0.940 0.939 0.913 0.939 0.930 0.895 0.949 0.960 Probable DNA polymerase epsilon subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q19196]
78. R119.4 pqn-59 16065 7.465 0.963 0.951 0.929 0.951 0.898 0.933 0.918 0.922 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_490727]
79. Y37E3.15 npp-13 7250 7.464 0.923 0.939 0.868 0.939 0.950 0.945 0.953 0.947 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_001293351]
80. F44B9.7 mdt-30 3651 7.463 0.921 0.924 0.915 0.924 0.951 0.954 0.947 0.927 Prion-like-(Q/N-rich) domain-bearing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:P34428]
81. B0336.1 wrm-1 8284 7.463 0.918 0.925 0.940 0.925 0.930 0.906 0.958 0.961 Armadillo repeat-containing protein wrm-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10953]
82. F10E9.8 sas-4 3703 7.462 0.930 0.933 0.939 0.933 0.909 0.938 0.975 0.905 Spindle assembly abnormal protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P34402]
83. ZK1320.12 taf-8 3558 7.462 0.934 0.928 0.939 0.928 0.944 0.957 0.945 0.887 TAF (TBP-associated transcription factor) family [Source:RefSeq peptide;Acc:NP_001022514]
84. C35D10.9 ced-4 3446 7.462 0.896 0.939 0.948 0.939 0.931 0.939 0.955 0.915 Cell death protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P30429]
85. Y43C5A.5 thk-1 2504 7.461 0.914 0.960 0.912 0.960 0.954 0.935 0.910 0.916 Thymidine kinase [Source:RefSeq peptide;Acc:NP_001255477]
86. W03G1.6 pig-1 5015 7.461 0.899 0.921 0.940 0.921 0.940 0.969 0.933 0.938 Maternal embryonic leucine zipper kinase [Source:UniProtKB/Swiss-Prot;Acc:U4PR86]
87. Y74C9A.4 rcor-1 4686 7.46 0.916 0.970 0.950 0.970 0.875 0.888 0.943 0.948 RCOR (REST CO-Repressor) homolog [Source:RefSeq peptide;Acc:NP_001293207]
88. Y32F6A.1 set-22 2474 7.459 0.888 0.941 0.929 0.941 0.960 0.887 0.950 0.963 SET (trithorax/polycomb) domain containing [Source:RefSeq peptide;Acc:NP_505681]
89. F36F2.6 fcp-1 3946 7.458 0.926 0.939 0.927 0.939 0.925 0.944 0.905 0.953 FCP1 (yeast TFIIF-interacting CTD phosphatase subunit) homolog [Source:RefSeq peptide;Acc:NP_492423]
90. Y47G6A.8 crn-1 3494 7.458 0.943 0.927 0.935 0.927 0.897 0.922 0.952 0.955 Flap endonuclease 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9N3T2]
91. F52C9.7 mog-3 9880 7.456 0.919 0.918 0.928 0.918 0.916 0.973 0.962 0.922 Masculinisation Of Germline [Source:RefSeq peptide;Acc:NP_498134]
92. F37D6.1 mus-101 1886 7.456 0.893 0.945 0.957 0.945 0.960 0.891 0.911 0.954
93. C26E6.4 rpb-2 7053 7.454 0.922 0.953 0.879 0.953 0.944 0.945 0.947 0.911 DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578]
94. D1081.8 cdc-5L 8553 7.454 0.912 0.949 0.933 0.949 0.930 0.917 0.902 0.962 Cell Division Cycle related [Source:RefSeq peptide;Acc:NP_492303]
95. K07A12.2 egg-6 18331 7.451 0.889 0.937 0.922 0.937 0.962 0.972 0.962 0.870 Leucine-rich repeat-containing protein egg-6 [Source:UniProtKB/Swiss-Prot;Acc:P90920]
96. C08B11.3 swsn-7 11608 7.45 0.940 0.940 0.959 0.940 0.938 0.935 0.945 0.853 SWI/SNF nucleosome remodeling complex component [Source:UniProtKB/Swiss-Prot;Acc:Q09441]
97. F44C4.4 gon-14 3947 7.449 0.911 0.937 0.936 0.937 0.949 0.904 0.954 0.921
98. F58E10.3 ddx-17 15107 7.448 0.908 0.959 0.923 0.959 0.925 0.921 0.905 0.948 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_001041134]
99. ZK381.1 him-3 4913 7.447 0.873 0.945 0.929 0.945 0.935 0.970 0.910 0.940 High Incidence of Males (increased X chromosome loss) [Source:RefSeq peptide;Acc:NP_501078]
100. T05H4.14 gad-1 7979 7.446 0.913 0.943 0.938 0.943 0.925 0.962 0.961 0.861 Gastrulation defective protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O16519]

There are 1325 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA