C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Experiment herm4, section s2.

Sample reads: 55. Showing entries 1-100.

No. Gene ID Gene Name Counts CPM Annotation
1. F33A8.3 cey-1 2.00 36363.64 C. Elegans Y-box [Source:RefSeq peptide;Acc:NP_496366]
2. Y24D9A.4 rpl-7A 2.00 36363.64 60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:Q966C6]
3. AH6.5 mex-6 1.00 18181.82 Zinc finger protein mex-6 [Source:UniProtKB/Swiss-Prot;Acc:Q09436]
4. C04A2.3 egl-27 1.00 18181.82 Egg-laying defective protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q09228]
5. C05G5.4 sucl-1 1.00 18181.82 Probable succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P53596]
6. C09G5.5 col-80 1.00 18181.82 Putative cuticle collagen 80 [Source:UniProtKB/Swiss-Prot;Acc:Q09456]
7. C34E10.6 atp-2 1.00 18181.82 ATP synthase subunit beta, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P46561]
8. C36B1.5 prp-4 1.00 18181.82 yeast PRP (splicing factor) related [Source:RefSeq peptide;Acc:NP_492363]
9. C37E2.5 ceh-37 1.00 18181.82 Homeobox protein ceh-37 [Source:UniProtKB/Swiss-Prot;Acc:Q93356]
10. C39F7.4 rab-1 1.00 18181.82 RAB family [Source:RefSeq peptide;Acc:NP_503397]
11. C40H1.5 ttr-5 1.00 18181.82 Transthyretin-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q03575]
12. C47E12.5 uba-1 1.00 18181.82 UBA (human ubiquitin) related [Source:RefSeq peptide;Acc:NP_001033405]
13. C47E8.11 C47E8.11 1.00 18181.82
14. C49H3.11 rps-2 1.00 18181.82 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P51403]
15. E04A4.7 cyc-2.1 1.00 18181.82 Cytochrome c 2.1 [Source:UniProtKB/Swiss-Prot;Acc:P19974]
16. F01G4.1 swsn-4 1.00 18181.82 SWI/SNF nucleosome remodeling complex component [Source:RefSeq peptide;Acc:NP_502082]
17. F02A9.3 far-2 1.00 18181.82 Fatty-acid and retinol-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P34383]
18. F20D12.1 csr-1 1.00 18181.82 Chromosome-Segregation and RNAi deficient [Source:RefSeq peptide;Acc:NP_001040938]
19. F20G2.2 F20G2.2 1.00 18181.82
20. F22A3.6 ilys-5 1.00 18181.82 Invertebrate LYSozyme [Source:RefSeq peptide;Acc:NP_001024594]
21. F25H2.5 ndk-1 1.00 18181.82 Nucleoside diphosphate kinase [Source:RefSeq peptide;Acc:NP_492761]
22. F26E4.8 tba-1 1.00 18181.82 TuBulin, Alpha [Source:RefSeq peptide;Acc:NP_001251213]
23. F26F4.7 nhl-2 1.00 18181.82 NHL (ring finger b-box coiled coil) domain containing [Source:RefSeq peptide;Acc:NP_498026]
24. F31E3.5 eef-1A.1 1.00 18181.82 Elongation factor 1-alpha [Source:UniProtKB/Swiss-Prot;Acc:P53013]
25. F32A5.4 F32A5.4 1.00 18181.82
26. F33H1.1 daf-19 1.00 18181.82 RFX-like transcription factor daf-19 [Source:UniProtKB/Swiss-Prot;Acc:Q09555]
27. F36A2.9 F36A2.9 1.00 18181.82
28. F39B2.6 rps-26 1.00 18181.82 40S ribosomal protein S26 [Source:UniProtKB/Swiss-Prot;Acc:O45499]
29. F40F11.1 rps-11 1.00 18181.82 Ribosomal Protein, Small subunit [Source:RefSeq peptide;Acc:NP_502186]
30. F54E7.2 rps-12 1.00 18181.82 40S ribosomal protein S12 [Source:UniProtKB/Swiss-Prot;Acc:P49196]
31. F56B6.4 gyg-1 1.00 18181.82 Glycogenin-1 [Source:UniProtKB/Swiss-Prot;Acc:H2KYQ5]
32. K08D12.6 K08D12.6 1.00 18181.82
33. K12G11.3 sodh-1 1.00 18181.82 Alcohol dehydrogenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q17334]
34. M03F4.2 act-4 1.00 18181.82 Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]
35. R10E11.8 vha-1 1.00 18181.82 V-type proton ATPase 16 kDa proteolipid subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q21898]
36. T01C3.6 rps-16 1.00 18181.82 40S ribosomal protein S16 [Source:UniProtKB/Swiss-Prot;Acc:Q22054]
37. T03G6.2 nhr-40 1.00 18181.82 Nuclear hormone receptor family member nhr-40 [Source:UniProtKB/Swiss-Prot;Acc:Q22127]
38. T03G6.3 T03G6.3 1.00 18181.82
39. T22F3.3 T22F3.3 1.00 18181.82 Alpha-1,4 glucan phosphorylase [Source:RefSeq peptide;Acc:NP_504007]
40. T23D8.4 eif-3.C 1.00 18181.82 Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O02328]
41. T23E7.2 T23E7.2 1.00 18181.82
42. T24D1.1 sqv-5 1.00 18181.82 Chondroitin sulfate synthase sqv-5 [Source:UniProtKB/Swiss-Prot;Acc:Q7Z1Z1]
43. T24H7.1 phb-2 1.00 18181.82 Mitochondrial prohibitin complex protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P50093]
44. T27C4.1 T27C4.1 1.00 18181.82
45. W01B11.3 nol-5 1.00 18181.82 NucleOLar protein [Source:RefSeq peptide;Acc:NP_491134]
46. Y119D3B.13 Y119D3B.13 1.00 18181.82
47. Y41C4A.4 crh-1 1.00 18181.82 CREB Homolog [Source:RefSeq peptide;Acc:NP_001022861]
48. Y59A8A.3 tcc-1 1.00 18181.82 Transmembrane and Coiled-Coil protein [Source:RefSeq peptide;Acc:NP_507506]
49. Y59E9AL.7 nbet-1 1.00 18181.82 Nematode homolog of yeast BET1 (Blocked Early in Transport) [Source:RefSeq peptide;Acc:NP_001023538]
50. ZK1073.1 ZK1073.1 1.00 18181.82
51. ZK20.3 rad-23 1.00 18181.82
52. ZK484.4 ZK484.4 1.00 18181.82
53. ZK673.7 tnc-2 1.00 18181.82 Troponin C, isoform 2 [Source:UniProtKB/Swiss-Prot;Acc:Q09665]
54. AC3.5 AC3.5 0.00 0.00 Aminopeptidase-like protein AC3.5 [Source:UniProtKB/Swiss-Prot;Acc:Q17405]
55. AC3.7 ugt-1 0.00 0.00 UDP-GlucuronosylTransferase [Source:RefSeq peptide;Acc:NP_505671]
56. AC7.2 soc-2 0.00 0.00 Leucine-rich repeat protein soc-2 [Source:UniProtKB/Swiss-Prot;Acc:Q22875]
57. AC8.11 AC8.11 0.00 0.00
58. AH10.1 acs-10 0.00 0.00 fatty Acid CoA Synthetase family [Source:RefSeq peptide;Acc:NP_506502]
59. AH6.3 AH6.3 0.00 0.00
60. AH9.2 crn-4 0.00 0.00 Cell death-related nuclease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q10905]
61. AH9.3 AH9.3 0.00 0.00
62. B0001.1 lin-24 0.00 0.00
63. B0001.2 B0001.2 0.00 0.00
64. B0001.3 B0001.3 0.00 0.00
65. B0001.4 B0001.4 0.00 0.00 Probable uridine-cytidine kinase [Source:UniProtKB/Swiss-Prot;Acc:Q17413]
66. B0001.5 B0001.5 0.00 0.00
67. B0001.6 eri-12 0.00 0.00 Enhanced RNAI (RNA interference) [Source:RefSeq peptide;Acc:NP_502310]
68. B0001.7 B0001.7 0.00 0.00
69. B0001.8 B0001.8 0.00 0.00
70. B0019.1 amx-2 0.00 0.00 AMine oXidase family [Source:RefSeq peptide;Acc:NP_493236]
71. B0019.2 B0019.2 0.00 0.00
72. B0024.1 col-149 0.00 0.00 COLlagen [Source:RefSeq peptide;Acc:NP_505646]
73. B0024.10 B0024.10 0.00 0.00
74. B0024.11 B0024.11 0.00 0.00 Putative pseudouridine synthase B0024.11 [Source:UniProtKB/Swiss-Prot;Acc:Q17426]
75. B0024.13 B0024.13 0.00 0.00 Polyprenol reductase [Source:UniProtKB/Swiss-Prot;Acc:Q17428]
76. B0024.2 col-150 0.00 0.00 COLlagen [Source:RefSeq peptide;Acc:NP_505647]
77. B0024.4 B0024.4 0.00 0.00
78. B0024.9 trx-2 0.00 0.00 Probable thioredoxin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q17424]
79. B0025.1 vps-34 0.00 0.00 Phosphatidylinositol 3-kinase [Source:RefSeq peptide;Acc:NP_491741]
80. B0025.2 csn-2 0.00 0.00 COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O01422]
81. B0025.4 B0025.4 0.00 0.00
82. B0034.3 casy-1 0.00 0.00 CAlSYntenin/Alcadein homolog [Source:RefSeq peptide;Acc:NP_001021110]
83. B0035.1 B0035.1 0.00 0.00
84. B0035.10 his-45 0.00 0.00 Histone H3 [Source:UniProtKB/Swiss-Prot;Acc:P08898]
85. B0035.11 leo-1 0.00 0.00 RNA polymerase-associated protein LEO1 [Source:UniProtKB/Swiss-Prot;Acc:Q17431]
86. B0035.12 sart-3 0.00 0.00 human SART-3/p110 homolog [Source:RefSeq peptide;Acc:NP_502136]
87. B0035.13 B0035.13 0.00 0.00
88. B0035.14 dnj-1 0.00 0.00 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_001263785]
89. B0035.15 B0035.15 0.00 0.00
90. B0035.16 mttu-1 0.00 0.00 Probable mitochondrial tRNA-specific 2-thiouridylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q17440]
91. B0035.18 B0035.18 0.00 0.00
92. B0035.2 dnj-2 0.00 0.00 DnaJ homolog dnj-2 [Source:UniProtKB/Swiss-Prot;Acc:Q17433]
93. B0035.3 B0035.3 0.00 0.00
94. B0035.4 pfd-4 0.00 0.00 Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q17435]
95. B0035.5 gspd-1 0.00 0.00 Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:Q27464]
96. B0035.6 B0035.6 0.00 0.00
97. B0041.2 ain-2 0.00 0.00 ALG-1 INteracting protein [Source:RefSeq peptide;Acc:NP_001249682]
98. B0041.3 lmd-2 0.00 0.00 LysM Domain (peptidoglycan binding) protein [Source:RefSeq peptide;Acc:NP_491415]
99. B0041.4 rpl-4 0.00 0.00 60S ribosomal protein L4 [Source:UniProtKB/Swiss-Prot;Acc:O02056]
100. B0041.5 B0041.5 0.00 0.00
First Previous 1 2 3 Next Last
Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA