C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact

Results for Y55F3BR.1

Gene ID Gene Name Reads Transcripts Annotation
Y55F3BR.1 Y55F3BR.1 1739 Y55F3BR.1

Genes with expression patterns similar to Y55F3BR.1

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. Y55F3BR.1 Y55F3BR.1 1739 2 - 1.000 - 1.000 - - - -
2. T13H5.4 T13H5.4 3041 1.952 - 0.976 - 0.976 - - - -
3. B0035.1 B0035.1 9802 1.948 - 0.974 - 0.974 - - - -
4. Y39H10A.7 chk-1 3350 1.946 - 0.973 - 0.973 - - - - Serine/threonine-protein kinase chk-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9N3Z3]
5. C13B4.2 usp-14 9000 1.942 - 0.971 - 0.971 - - - - Ubiquitin carboxyl-terminal hydrolase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q17361]
6. F59E12.4 npl-4.1 3224 1.938 - 0.969 - 0.969 - - - - NPL (yeast Nuclear Protein Localization) homolog [Source:RefSeq peptide;Acc:NP_495097]
7. T08G5.5 vps-39 4669 1.936 - 0.968 - 0.968 - - - - related to yeast Vacuolar Protein Sorting factor [Source:RefSeq peptide;Acc:NP_001041163]
8. D1054.2 pas-2 11518 1.934 - 0.967 - 0.967 - - - - Proteasome subunit alpha type-2 [Source:UniProtKB/Swiss-Prot;Acc:Q27488]
9. T09A12.5 T09A12.5 9445 1.932 - 0.966 - 0.966 - - - -
10. F45F2.10 F45F2.10 12248 1.932 - 0.966 - 0.966 - - - -
11. R02D3.5 fnta-1 5258 1.932 - 0.966 - 0.966 - - - - FarNesylTransferase, Alpha subunit [Source:RefSeq peptide;Acc:NP_499882]
12. C08B6.9 aos-1 3892 1.93 - 0.965 - 0.965 - - - - SUMO-activating enzyme subunit aos-1 [Source:UniProtKB/Swiss-Prot;Acc:Q17820]
13. R07E5.14 rnp-4 11659 1.928 - 0.964 - 0.964 - - - - RNA-binding protein 8A [Source:RefSeq peptide;Acc:NP_497891]
14. Y38A10A.7 Y38A10A.7 2665 1.928 - 0.964 - 0.964 - - - -
15. C32F10.2 lin-35 2455 1.928 - 0.964 - 0.964 - - - - Synthetic multivulva protein LIN-35 Rb; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EDT1]
16. B0041.2 ain-2 13092 1.926 - 0.963 - 0.963 - - - - ALG-1 INteracting protein [Source:RefSeq peptide;Acc:NP_001249682]
17. C36B1.4 pas-4 13140 1.926 - 0.963 - 0.963 - - - - Proteasome subunit alpha type-7 [Source:UniProtKB/Swiss-Prot;Acc:Q95005]
18. C25H3.4 C25H3.4 2526 1.926 - 0.963 - 0.963 - - - -
19. T19B4.7 unc-40 5563 1.926 - 0.963 - 0.963 - - - - Unc-40 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EF96]
20. F10D11.1 sod-2 7480 1.926 - 0.963 - 0.963 - - - - Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P31161]
21. ZK809.5 ZK809.5 5228 1.926 - 0.963 - 0.963 - - - -
22. T22D1.9 rpn-1 25674 1.926 - 0.963 - 0.963 - - - - proteasome Regulatory Particle, Non-ATPase-like [Source:RefSeq peptide;Acc:NP_501064]
23. R07G3.1 cdc-42 35737 1.924 - 0.962 - 0.962 - - - - Cell division control protein 42 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q05062]
24. F38H4.9 let-92 25368 1.924 - 0.962 - 0.962 - - - - Serine/threonine-protein phosphatase [Source:RefSeq peptide;Acc:NP_502247]
25. Y55F3BR.8 lem-4 1660 1.924 - 0.962 - 0.962 - - - - Ankyrin repeat and LEM domain-containing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:H2KZB2]
26. F25H5.5 F25H5.5 1948 1.922 - 0.961 - 0.961 - - - -
27. F13H10.2 ndx-9 3125 1.922 - 0.961 - 0.961 - - - - NADH pyrophosphatase [Source:UniProtKB/Swiss-Prot;Acc:Q19427]
28. Y43H11AL.2 laat-1 5712 1.922 - 0.961 - 0.961 - - - - Lysosomal amino acid transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q95XZ6]
29. B0001.7 B0001.7 1590 1.922 - 0.961 - 0.961 - - - -
30. F26F4.7 nhl-2 13541 1.922 - 0.961 - 0.961 - - - - NHL (ring finger b-box coiled coil) domain containing [Source:RefSeq peptide;Acc:NP_498026]
31. Y56A3A.17 npp-16 5391 1.922 - 0.961 - 0.961 - - - - Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_499550]
32. R12C12.2 ran-5 14517 1.92 - 0.960 - 0.960 - - - - associated with RAN (nuclear import/export) function [Source:RefSeq peptide;Acc:NP_495208]
33. Y53C10A.12 hsf-1 7899 1.92 - 0.960 - 0.960 - - - - Heat Shock Factor [Source:RefSeq peptide;Acc:NP_493031]
34. Y106G6A.2 epg-8 3015 1.92 - 0.960 - 0.960 - - - - Ectopic P Granules [Source:RefSeq peptide;Acc:NP_740908]
35. Y46G5A.17 cpt-1 14412 1.92 - 0.960 - 0.960 - - - - Carnitine Palmitoyl Transferase [Source:RefSeq peptide;Acc:NP_496721]
36. T27C4.4 lin-40 16565 1.92 - 0.960 - 0.960 - - - -
37. C17E4.6 C17E4.6 8416 1.918 - 0.959 - 0.959 - - - -
38. K07C5.6 K07C5.6 7375 1.918 - 0.959 - 0.959 - - - - Pre-mRNA-splicing factor SLU7 [Source:UniProtKB/Swiss-Prot;Acc:Q21278]
39. F10B5.8 F10B5.8 5954 1.918 - 0.959 - 0.959 - - - -
40. C16C2.4 C16C2.4 5756 1.918 - 0.959 - 0.959 - - - -
41. ZK945.2 pas-7 4169 1.918 - 0.959 - 0.959 - - - - Proteasome subunit alpha type-3 [Source:UniProtKB/Swiss-Prot;Acc:Q09583]
42. R12E2.3 rpn-8 11194 1.918 - 0.959 - 0.959 - - - - proteasome Regulatory Particle, Non-ATPase-like [Source:RefSeq peptide;Acc:NP_491319]
43. C23G10.4 rpn-2 17587 1.918 - 0.959 - 0.959 - - - - 26S proteasome non-ATPase regulatory subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q18115]
44. F56D1.1 F56D1.1 3768 1.918 - 0.959 - 0.959 - - - - Putative zinc finger protein F56D1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q10127]
45. C50E3.5 C50E3.5 1746 1.918 - 0.959 - 0.959 - - - -
46. C24D10.6 C24D10.6 5413 1.918 - 0.959 - 0.959 - - - -
47. ZC395.8 ztf-8 5521 1.916 - 0.958 - 0.958 - - - - Zinc finger putative Transcription Factor family [Source:RefSeq peptide;Acc:NP_498124]
48. R05D3.11 met-2 3364 1.916 - 0.958 - 0.958 - - - - Histone-lysine N-methyltransferase met-2 [Source:UniProtKB/Swiss-Prot;Acc:P34544]
49. R06A4.9 pfs-2 4733 1.916 - 0.958 - 0.958 - - - - Polyadenylation Factor Subunit homolog [Source:RefSeq peptide;Acc:NP_001293597]
50. K08E3.6 cyk-4 8158 1.916 - 0.958 - 0.958 - - - - CYtoKinesis defect [Source:RefSeq peptide;Acc:NP_499845]
51. F29B9.4 psr-1 4355 1.916 - 0.958 - 0.958 - - - - Bifunctional arginine demethylase and lysyl-hydroxylase psr-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9GYI4]
52. T04A8.10 sel-13 3109 1.916 - 0.958 - 0.958 - - - - Suppressor/Enhancer of Lin-12 [Source:RefSeq peptide;Acc:NP_497963]
53. R12E2.1 R12E2.1 4421 1.916 - 0.958 - 0.958 - - - -
54. Y52B11A.3 Y52B11A.3 1827 1.916 - 0.958 - 0.958 - - - -
55. C55B7.9 mdt-18 2592 1.916 - 0.958 - 0.958 - - - - Mediator of RNA polymerase II transcription subunit 18 [Source:UniProtKB/Swiss-Prot;Acc:Q966M5]
56. K10D2.7 K10D2.7 4982 1.914 - 0.957 - 0.957 - - - - Molybdopterin synthase sulfur carrier subunit [Source:UniProtKB/Swiss-Prot;Acc:Q09412]
57. Y49E10.1 rpt-6 7806 1.914 - 0.957 - 0.957 - - - - proteasome Regulatory Particle, ATPase-like [Source:RefSeq peptide;Acc:NP_499609]
58. Y34D9A.1 mrpl-38 5291 1.914 - 0.957 - 0.957 - - - - Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_490808]
59. K10B2.5 ani-2 11397 1.914 - 0.957 - 0.957 - - - - Anillin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q09994]
60. C12D8.1 C12D8.1 4255 1.914 - 0.957 - 0.957 - - - -
61. M02B1.3 M02B1.3 15234 1.914 - 0.957 - 0.957 - - - -
62. B0464.8 tag-342 1050 1.914 - 0.957 - 0.957 - - - -
63. F26F4.4 tag-340 7760 1.914 - 0.957 - 0.957 - - - -
64. Y59A8B.7 ebp-1 6297 1.914 - 0.957 - 0.957 - - - - microtubule End Binding Protein [Source:RefSeq peptide;Acc:NP_507526]
65. C05C10.6 ufd-3 6304 1.914 - 0.957 - 0.957 - - - - Ubiquitin Fusion Degradation (yeast UFD homolog) [Source:RefSeq peptide;Acc:NP_496146]
66. F32D1.9 fipp-1 10239 1.914 - 0.957 - 0.957 - - - - Factor Interacting with Poly(A) Polymerase [Source:RefSeq peptide;Acc:NP_504203]
67. T01B11.3 syx-4 1573 1.914 - 0.957 - 0.957 - - - - Putative syntaxin-4 [Source:UniProtKB/Swiss-Prot;Acc:P91409]
68. C54G10.2 rfc-1 8814 1.914 - 0.957 - 0.957 - - - - RFC (DNA replication factor) family [Source:RefSeq peptide;Acc:NP_001256606]
69. B0286.4 ntl-2 14207 1.914 - 0.957 - 0.957 - - - - NOT-Like (yeast CCR4/NOT complex component) [Source:RefSeq peptide;Acc:NP_494772]
70. M01E5.3 M01E5.3 17209 1.914 - 0.957 - 0.957 - - - -
71. H20J04.2 athp-2 5149 1.912 - 0.956 - 0.956 - - - - AT Hook plus PHD finger transcription factor [Source:RefSeq peptide;Acc:NP_494767]
72. F08F8.3 kap-1 31437 1.912 - 0.956 - 0.956 - - - - Kinesin-Associated Protein [Source:RefSeq peptide;Acc:NP_001021246]
73. R13H4.4 hmp-1 7668 1.912 - 0.956 - 0.956 - - - - Alpha-catenin-like protein hmp-1 [Source:UniProtKB/Swiss-Prot;Acc:P90947]
74. T06D8.8 rpn-9 11282 1.912 - 0.956 - 0.956 - - - - proteasome Regulatory Particle, Non-ATPase-like [Source:RefSeq peptide;Acc:NP_496405]
75. F01G4.1 swsn-4 14710 1.912 - 0.956 - 0.956 - - - - SWI/SNF nucleosome remodeling complex component [Source:RefSeq peptide;Acc:NP_502082]
76. C24G6.8 C24G6.8 7427 1.912 - 0.956 - 0.956 - - - - Probable peptidyl-tRNA hydrolase 2 [Source:UniProtKB/Swiss-Prot;Acc:O76387]
77. Y42H9AR.4 Y42H9AR.4 5102 1.912 - 0.956 - 0.956 - - - -
78. Y110A7A.13 chp-1 6714 1.912 - 0.956 - 0.956 - - - - CHORD Protein [Source:RefSeq peptide;Acc:NP_491519]
79. C29H12.2 C29H12.2 11018 1.91 - 0.955 - 0.955 - - - -
80. K07A1.12 lin-53 15817 1.91 - 0.955 - 0.955 - - - - Probable histone-binding protein lin-53 [Source:UniProtKB/Swiss-Prot;Acc:P90916]
81. Y43F4B.4 npp-18 4780 1.91 - 0.955 - 0.955 - - - - Nucleoporin SEH1 [Source:UniProtKB/Swiss-Prot;Acc:O45933]
82. C07H4.2 clh-5 6446 1.91 - 0.955 - 0.955 - - - - Chloride channel protein [Source:RefSeq peptide;Acc:NP_495940]
83. R119.7 rnp-8 5640 1.91 - 0.955 - 0.955 - - - - RNP (RRM RNA binding domain) containing [Source:RefSeq peptide;Acc:NP_001293232]
84. ZK1248.13 ZK1248.13 1528 1.91 - 0.955 - 0.955 - - - -
85. R06C1.2 fdps-1 4504 1.91 - 0.955 - 0.955 - - - - Farnesyl DiPhosphate Synthetase [Source:RefSeq peptide;Acc:NP_493027]
86. C04E6.11 C04E6.11 2161 1.91 - 0.955 - 0.955 - - - -
87. F57B1.2 sun-1 5721 1.91 - 0.955 - 0.955 - - - - Sun domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q20924]
88. ZK1128.8 vps-29 5118 1.91 - 0.955 - 0.955 - - - - Vacuolar protein sorting-associated protein 29 [Source:RefSeq peptide;Acc:NP_001022987]
89. F56F11.4 F56F11.4 4598 1.91 - 0.955 - 0.955 - - - -
90. Y94H6A.9 ubxn-2 7082 1.91 - 0.955 - 0.955 - - - - UBX-containing protein in Nematodes [Source:RefSeq peptide;Acc:NP_001023590]
91. Y54G2A.2 atln-1 16823 1.908 - 0.954 - 0.954 - - - - ATLastiN (endoplasmic reticulum GTPase) related [Source:RefSeq peptide;Acc:NP_001023492]
92. C33H5.6 swd-2.1 2044 1.908 - 0.954 - 0.954 - - - - Set1 WD40 repeat protein homolog [Source:RefSeq peptide;Acc:NP_501281]
93. Y54E5B.3 let-49 2437 1.908 - 0.954 - 0.954 - - - - Mediator of RNA polymerase II transcription subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q95Q17]
94. F52G2.1 dcap-2 2598 1.908 - 0.954 - 0.954 - - - - mRNA-decapping enzyme 2 [Source:UniProtKB/Swiss-Prot;Acc:O62255]
95. F45D3.5 sel-1 14277 1.908 - 0.954 - 0.954 - - - - Suppressor/Enhancer of Lin-12 [Source:RefSeq peptide;Acc:NP_506144]
96. Y54G2A.12 Y54G2A.12 977 1.908 - 0.954 - 0.954 - - - -
97. K07A1.1 K07A1.1 5567 1.908 - 0.954 - 0.954 - - - -
98. ZK1055.1 hcp-1 5565 1.908 - 0.954 - 0.954 - - - - HoloCentric chromosome binding Protein [Source:RefSeq peptide;Acc:NP_504677]
99. T25D3.4 T25D3.4 6343 1.908 - 0.954 - 0.954 - - - -
100. C02F5.13 C02F5.13 1998 1.908 - 0.954 - 0.954 - - - - TM2 domain-containing protein C02F5.13 [Source:UniProtKB/Swiss-Prot;Acc:P61228]

There are 62 more genes with r >= 0.95  Show all


Refine r cutoff to:   

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA