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Results for R05D3.4

Gene ID Gene Name Reads Transcripts Annotation
R05D3.4 rfp-1 3613 R05D3.4a, R05D3.4b E3 ubiquitin-protein ligase bre-1 [Source:UniProtKB/Swiss-Prot;Acc:P34537]

Genes with expression patterns similar to R05D3.4

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. R05D3.4 rfp-1 3613 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 E3 ubiquitin-protein ligase bre-1 [Source:UniProtKB/Swiss-Prot;Acc:P34537]
2. C17H12.13 anat-1 12995 7.598 0.941 0.977 0.965 0.977 0.971 0.915 0.940 0.912 AANAT (Arylalkylamine N-AcetylTransferase) homolog [Source:RefSeq peptide;Acc:NP_001076663]
3. R06A4.4 imb-2 10302 7.563 0.951 0.966 0.972 0.966 0.953 0.964 0.946 0.845 IMportin Beta family [Source:RefSeq peptide;Acc:NP_496987]
4. F45E12.2 brf-1 4667 7.56 0.968 0.987 0.955 0.987 0.958 0.954 0.919 0.832 BRF (transcription factor) homolog [Source:RefSeq peptide;Acc:NP_495526]
5. C41C4.6 ulp-4 13338 7.556 0.963 0.949 0.968 0.949 0.972 0.934 0.936 0.885 Ubiquitin-like protease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q09275]
6. Y55F3AM.12 dcap-1 8679 7.542 0.961 0.982 0.975 0.982 0.956 0.939 0.906 0.841 mRNA DeCAPping enzyme [Source:RefSeq peptide;Acc:NP_500030]
7. D1007.8 D1007.8 1265 7.538 0.939 0.961 0.968 0.961 0.970 0.959 0.905 0.875
8. Y41D4B.19 npp-8 12992 7.522 0.969 0.975 0.970 0.975 0.940 0.926 0.922 0.845 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_500102]
9. T24H10.3 dnj-23 11446 7.512 0.947 0.972 0.956 0.972 0.951 0.968 0.920 0.826 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_495944]
10. ZK1128.6 ttll-4 6059 7.509 0.946 0.974 0.965 0.974 0.961 0.970 0.901 0.818 Tubulin polyglutamylase ttll-4 [Source:UniProtKB/Swiss-Prot;Acc:Q09647]
11. T21B10.7 cct-2 13999 7.508 0.967 0.944 0.943 0.944 0.938 0.975 0.928 0.869 T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:P47207]
12. Y38C9A.2 cgp-1 11756 7.502 0.944 0.975 0.963 0.975 0.970 0.950 0.923 0.802 GTP-binding protein cgp-1 [Source:UniProtKB/Swiss-Prot;Acc:Q18905]
13. CC4.3 smu-1 4169 7.499 0.939 0.968 0.980 0.968 0.955 0.929 0.907 0.853 Suppressor of Mec and Unc defects [Source:RefSeq peptide;Acc:NP_493279]
14. T05C12.7 cct-1 41264 7.498 0.959 0.985 0.957 0.985 0.904 0.890 0.950 0.868 T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P41988]
15. C38C10.5 rgr-1 4146 7.492 0.963 0.976 0.962 0.976 0.934 0.920 0.872 0.889 Mediator of RNA polymerase II transcription subunit 14 [Source:UniProtKB/Swiss-Prot;Acc:Q03570]
16. T21B10.1 mrpl-50 14595 7.488 0.949 0.957 0.934 0.957 0.912 0.969 0.930 0.880 Mitochondrial Ribosomal Protein, Large [Source:RefSeq peptide;Acc:NP_495899]
17. F53E4.1 F53E4.1 7979 7.487 0.956 0.945 0.961 0.945 0.932 0.902 0.947 0.899
18. F52C9.7 mog-3 9880 7.487 0.961 0.966 0.969 0.966 0.946 0.923 0.866 0.890 Masculinisation Of Germline [Source:RefSeq peptide;Acc:NP_498134]
19. ZK1290.4 nfi-1 5353 7.484 0.949 0.956 0.979 0.956 0.936 0.916 0.872 0.920 NFI (Nuclear Factor I) family [Source:RefSeq peptide;Acc:NP_001022505]
20. C26E6.7 eri-9 8069 7.483 0.947 0.972 0.930 0.972 0.960 0.919 0.923 0.860 Enhanced RNAI (RNA interference) [Source:RefSeq peptide;Acc:NP_001293626]
21. C02F5.4 cids-1 3125 7.48 0.926 0.970 0.955 0.970 0.973 0.969 0.923 0.794 CID domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P34281]
22. T24F1.1 raga-1 16171 7.478 0.945 0.980 0.971 0.980 0.893 0.878 0.939 0.892 RAs-related GTP-binding protein A [Source:RefSeq peptide;Acc:NP_496415]
23. C49H3.10 xpo-3 9101 7.478 0.942 0.967 0.975 0.967 0.922 0.931 0.910 0.864 eXPOrtin (nuclear export receptor) [Source:RefSeq peptide;Acc:NP_001294153]
24. C17G10.4 cdc-14 6262 7.474 0.966 0.948 0.941 0.948 0.923 0.918 0.915 0.915 Probable tyrosine-protein phosphatase cdc-14 [Source:UniProtKB/Swiss-Prot;Acc:P81299]
25. W06E11.4 sbds-1 6701 7.473 0.933 0.973 0.964 0.973 0.951 0.966 0.899 0.814 Ribosome maturation protein SBDS [Source:UniProtKB/Swiss-Prot;Acc:Q23202]
26. K04G2.2 aho-3 15189 7.472 0.937 0.960 0.956 0.960 0.973 0.919 0.935 0.832
27. C18E9.3 szy-20 6819 7.469 0.952 0.964 0.972 0.964 0.949 0.954 0.951 0.763 Suppressor of ZYg-1 [Source:RefSeq peptide;Acc:NP_495909]
28. C08B11.3 swsn-7 11608 7.458 0.942 0.980 0.960 0.980 0.906 0.902 0.852 0.936 SWI/SNF nucleosome remodeling complex component [Source:UniProtKB/Swiss-Prot;Acc:Q09441]
29. Y40B1B.6 spr-5 6252 7.458 0.973 0.975 0.976 0.975 0.919 0.975 0.844 0.821 Probable lysine-specific histone demethylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XWP6]
30. F43G6.9 patr-1 23000 7.454 0.920 0.963 0.949 0.963 0.951 0.891 0.940 0.877 Protein PAT1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q20374]
31. F59A2.1 npp-9 34375 7.453 0.966 0.975 0.972 0.975 0.942 0.934 0.930 0.759 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_871701]
32. F28D1.10 gex-3 5286 7.452 0.935 0.968 0.970 0.968 0.943 0.893 0.887 0.888 Membrane-associated protein gex-3 [Source:UniProtKB/Swiss-Prot;Acc:P55163]
33. C53A5.3 hda-1 18413 7.451 0.953 0.974 0.970 0.974 0.884 0.884 0.915 0.897 Histone deacetylase 1 [Source:UniProtKB/Swiss-Prot;Acc:O17695]
34. Y53C12B.3 nos-3 20231 7.449 0.952 0.976 0.964 0.976 0.941 0.953 0.907 0.780 NanOS related [Source:RefSeq peptide;Acc:NP_496101]
35. T25G3.4 T25G3.4 9394 7.448 0.951 0.962 0.943 0.962 0.938 0.934 0.914 0.844 Probable glycerol-3-phosphate dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P90795]
36. F32H2.1 snpc-4 7581 7.448 0.965 0.976 0.936 0.976 0.879 0.957 0.890 0.869 snRNA-activating protein complex subunit 4 homolog [Source:UniProtKB/Swiss-Prot;Acc:P91868]
37. Y47D3A.26 smc-3 6256 7.448 0.953 0.962 0.968 0.962 0.962 0.941 0.902 0.798 Structural maintenance of chromosomes protein 3 [Source:UniProtKB/Swiss-Prot;Acc:B2FDA8]
38. M03A1.1 vab-1 6654 7.447 0.927 0.977 0.928 0.977 0.976 0.928 0.900 0.834 Ephrin receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:O61460]
39. K07D4.3 rpn-11 8834 7.441 0.950 0.970 0.956 0.970 0.923 0.871 0.926 0.875 26S proteasome non-ATPase regulatory subunit 14 [Source:UniProtKB/Swiss-Prot;Acc:O76577]
40. F01F1.8 cct-6 29460 7.44 0.940 0.953 0.939 0.953 0.914 0.973 0.932 0.836 T-complex protein 1 subunit zeta [Source:UniProtKB/Swiss-Prot;Acc:P46550]
41. K08F4.2 gtbp-1 25222 7.44 0.957 0.954 0.940 0.954 0.918 0.977 0.941 0.799 ras-Gtpase-activating protein SH3 (Three) domain-Binding Protein [Source:RefSeq peptide;Acc:NP_501842]
42. Y62E10A.11 mdt-9 5971 7.436 0.953 0.967 0.953 0.967 0.905 0.929 0.926 0.836 MeDiaTor [Source:RefSeq peptide;Acc:NP_001255737]
43. Y51H1A.4 ing-3 8617 7.435 0.937 0.959 0.966 0.959 0.955 0.912 0.901 0.846 Inhibitor of growth protein [Source:RefSeq peptide;Acc:NP_496909]
44. R74.8 R74.8 7722 7.433 0.944 0.973 0.947 0.973 0.932 0.928 0.939 0.797
45. R11A5.2 nud-2 15326 7.431 0.946 0.960 0.979 0.960 0.920 0.849 0.917 0.900 Aspergillus NUclear Division related [Source:RefSeq peptide;Acc:NP_492172]
46. C36A4.5 maph-1.3 15493 7.431 0.926 0.964 0.965 0.964 0.970 0.925 0.947 0.770 Microtubule-Associated Protein Homolog [Source:RefSeq peptide;Acc:NP_497778]
47. C07H6.5 cgh-1 60576 7.43 0.938 0.937 0.958 0.937 0.979 0.965 0.926 0.790 ATP-dependent RNA helicase cgh-1 [Source:UniProtKB/Swiss-Prot;Acc:Q95YF3]
48. Y37D8A.9 mrg-1 14369 7.428 0.958 0.975 0.972 0.975 0.946 0.937 0.916 0.749 human MRG (Mortality factor-Related Gene) related [Source:RefSeq peptide;Acc:NP_499675]
49. ZK1251.9 dcaf-1 10926 7.427 0.968 0.975 0.959 0.975 0.954 0.927 0.884 0.785 DDB1- and CUL4-associated factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q21106]
50. K07A1.12 lin-53 15817 7.427 0.938 0.976 0.978 0.976 0.957 0.922 0.933 0.747 Probable histone-binding protein lin-53 [Source:UniProtKB/Swiss-Prot;Acc:P90916]
51. F44G4.4 tdp-1 3335 7.425 0.942 0.966 0.937 0.966 0.942 0.976 0.908 0.788 Tar DNA-binding protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:D0VWM8]
52. K07C5.1 arx-2 20142 7.425 0.948 0.971 0.972 0.971 0.896 0.841 0.938 0.888 Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P53489]
53. F53A2.4 nud-1 7818 7.425 0.945 0.965 0.947 0.965 0.962 0.953 0.938 0.750 Aspergillus NUclear Division related [Source:RefSeq peptide;Acc:NP_499749]
54. T26E3.3 par-6 8650 7.424 0.953 0.975 0.961 0.975 0.895 0.891 0.909 0.865 Partitioning defective protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9NAN2]
55. C07G2.3 cct-5 44703 7.424 0.956 0.940 0.930 0.940 0.910 0.935 0.949 0.864 T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:P47209]
56. F40F8.9 lsm-1 5917 7.421 0.944 0.946 0.903 0.946 0.958 0.922 0.926 0.876 LSM Sm-like protein [Source:RefSeq peptide;Acc:NP_496385]
57. F59G1.5 ptp-2 7879 7.417 0.954 0.975 0.973 0.975 0.937 0.937 0.825 0.841 Tyrosine-protein phosphatase non-receptor type [Source:RefSeq peptide;Acc:NP_001293512]
58. F21C3.4 rde-2 6286 7.417 0.910 0.976 0.942 0.976 0.934 0.967 0.897 0.815
59. C43E11.10 cdc-6 5331 7.417 0.954 0.964 0.941 0.964 0.893 0.941 0.919 0.841 Cell Division Cycle related [Source:RefSeq peptide;Acc:NP_491343]
60. T01B7.6 trcs-2 9792 7.414 0.936 0.976 0.956 0.976 0.947 0.897 0.908 0.818 TRansport of membrane to Cell Surface [Source:RefSeq peptide;Acc:NP_495857]
61. T19B4.2 npp-7 13073 7.413 0.972 0.967 0.979 0.967 0.864 0.898 0.921 0.845 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491665]
62. Y116A8C.42 snr-1 17062 7.413 0.949 0.970 0.958 0.970 0.938 0.926 0.931 0.771 Small nuclear ribonucleoprotein Sm D3 [Source:UniProtKB/Swiss-Prot;Acc:Q17348]
63. R07E5.14 rnp-4 11659 7.413 0.957 0.975 0.974 0.975 0.940 0.927 0.924 0.741 RNA-binding protein 8A [Source:RefSeq peptide;Acc:NP_497891]
64. Y41D4B.13 ced-2 10100 7.412 0.960 0.959 0.970 0.959 0.940 0.906 0.931 0.787 Cell death abnormality protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9NHC3]
65. F01F1.4 rabn-5 5269 7.412 0.934 0.968 0.941 0.968 0.881 0.938 0.865 0.917 RABaptiN (rab effector) [Source:RefSeq peptide;Acc:NP_498266]
66. Y71G12B.9 lin-65 7476 7.409 0.967 0.972 0.953 0.972 0.947 0.932 0.917 0.749 LIN-65L; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q95XN0]
67. C37A2.2 pqn-20 10913 7.405 0.945 0.974 0.969 0.974 0.850 0.909 0.900 0.884 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_491945]
68. C25A1.4 C25A1.4 15507 7.405 0.948 0.967 0.969 0.967 0.943 0.877 0.905 0.829
69. F09F7.3 rpc-2 9751 7.405 0.927 0.939 0.928 0.939 0.953 0.965 0.912 0.842 DNA-directed RNA polymerase [Source:RefSeq peptide;Acc:NP_498192]
70. F09G2.9 attf-2 14771 7.404 0.975 0.973 0.963 0.973 0.931 0.961 0.928 0.700 AT hook Transcription Factor family [Source:RefSeq peptide;Acc:NP_504825]
71. C34E10.2 gop-2 5684 7.4 0.951 0.966 0.960 0.966 0.930 0.944 0.906 0.777 GPN-loop GTPase 1 [Source:UniProtKB/Swiss-Prot;Acc:P46577]
72. B0035.12 sart-3 7188 7.398 0.968 0.959 0.944 0.959 0.954 0.966 0.900 0.748 human SART-3/p110 homolog [Source:RefSeq peptide;Acc:NP_502136]
73. F26H9.1 prom-1 6444 7.398 0.974 0.962 0.970 0.962 0.973 0.887 0.915 0.755 PRogression Of Meiosis [Source:RefSeq peptide;Acc:NP_492477]
74. C01G8.3 dhs-1 5394 7.396 0.942 0.967 0.969 0.967 0.915 0.915 0.916 0.805 DeHydrogenases, Short chain [Source:RefSeq peptide;Acc:NP_491557]
75. T22F3.3 T22F3.3 59630 7.394 0.923 0.911 0.965 0.911 0.927 0.934 0.920 0.903 Alpha-1,4 glucan phosphorylase [Source:RefSeq peptide;Acc:NP_504007]
76. M04B2.1 mep-1 14260 7.393 0.958 0.977 0.965 0.977 0.908 0.881 0.883 0.844 MOG interacting and ectopic P-granules protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q21502]
77. C55A6.2 ttll-5 5158 7.392 0.934 0.969 0.952 0.969 0.880 0.910 0.893 0.885 Tubulin Tyrosine Ligase Like [Source:RefSeq peptide;Acc:NP_001256332]
78. T22C1.3 T22C1.3 2305 7.391 0.965 0.941 0.979 0.941 0.940 0.917 0.869 0.839
79. F43G9.5 cfim-1 9169 7.39 0.950 0.963 0.981 0.963 0.958 0.916 0.908 0.751 Cleavage Factor IM (CFIm) homolog [Source:RefSeq peptide;Acc:NP_492334]
80. Y73B6A.5 lin-45 10864 7.389 0.945 0.958 0.953 0.958 0.905 0.827 0.927 0.916 Raf homolog serine/threonine-protein kinase [Source:UniProtKB/Swiss-Prot;Acc:Q07292]
81. K11H3.6 mrpl-36 7328 7.387 0.932 0.961 0.947 0.961 0.943 0.934 0.917 0.792 Ribosomal protein [Source:RefSeq peptide;Acc:NP_001022680]
82. Y17G7B.21 Y17G7B.21 10813 7.384 0.922 0.926 0.973 0.926 0.964 0.903 0.905 0.865
83. F15D4.1 btf-1 2519 7.383 0.967 0.955 0.951 0.955 0.905 0.955 0.926 0.769 BTAF (TBP-associated factor) homolog [Source:RefSeq peptide;Acc:NP_496802]
84. Y14H12B.2 Y14H12B.2 6496 7.383 0.947 0.959 0.978 0.959 0.968 0.926 0.931 0.715
85. C52E12.4 lst-6 5520 7.382 0.955 0.972 0.965 0.972 0.866 0.912 0.830 0.910 Lateral Signaling Target [Source:RefSeq peptide;Acc:NP_495437]
86. C09G9.2 npp-23 2886 7.381 0.941 0.958 0.957 0.958 0.897 0.936 0.934 0.800 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_501537]
87. C14B1.4 wdr-5.1 4424 7.38 0.920 0.951 0.958 0.951 0.911 0.939 0.927 0.823 WD repeat-containing protein wdr-5.1 [Source:UniProtKB/Swiss-Prot;Acc:Q17963]
88. F58E10.3 ddx-17 15107 7.38 0.954 0.966 0.959 0.966 0.862 0.951 0.926 0.796 DEAD boX helicase homolog [Source:RefSeq peptide;Acc:NP_001041134]
89. K01G5.1 rnf-113 4336 7.38 0.943 0.948 0.957 0.948 0.932 0.969 0.864 0.819 RING finger protein 113 homolog [Source:UniProtKB/Swiss-Prot;Acc:O17917]
90. F59E12.11 sam-4 8179 7.38 0.942 0.968 0.958 0.968 0.911 0.903 0.914 0.816
91. T23H2.1 npp-12 12425 7.379 0.978 0.972 0.960 0.972 0.890 0.934 0.877 0.796 Nuclear Pore complex Protein [Source:RefSeq peptide;Acc:NP_491855]
92. F41H10.11 sand-1 5039 7.376 0.924 0.957 0.941 0.957 0.970 0.955 0.897 0.775 SAND endocytosis protein family [Source:RefSeq peptide;Acc:NP_500791]
93. F16A11.2 rtcb-1 2276 7.376 0.951 0.957 0.943 0.957 0.926 0.906 0.888 0.848 tRNA-splicing ligase RtcB homolog [Source:UniProtKB/Swiss-Prot;Acc:P90838]
94. R10E11.3 usp-46 3909 7.375 0.940 0.957 0.954 0.957 0.944 0.864 0.870 0.889 Ubiquitin carboxyl-terminal hydrolase 46 [Source:UniProtKB/Swiss-Prot;Acc:P34547]
95. F55A12.3 ppk-1 8598 7.375 0.960 0.962 0.952 0.962 0.931 0.840 0.858 0.910 PIP Kinase [Source:RefSeq peptide;Acc:NP_491576]
96. F23F1.1 nfyc-1 9983 7.373 0.975 0.974 0.977 0.974 0.931 0.939 0.855 0.748 Nuclear transcription Factor Y, C (gamma) subunit [Source:RefSeq peptide;Acc:NP_493645]
97. W02F12.6 sna-1 7338 7.372 0.959 0.968 0.944 0.968 0.892 0.945 0.878 0.818 Small Nuclear RNA (snRNA) Associated protein [Source:RefSeq peptide;Acc:NP_504701]
98. T28D9.10 snr-3 9995 7.371 0.942 0.956 0.905 0.956 0.918 0.959 0.937 0.798 Probable small nuclear ribonucleoprotein Sm D1 [Source:UniProtKB/Swiss-Prot;Acc:Q10013]
99. Y71F9B.4 snr-7 13542 7.371 0.924 0.966 0.938 0.966 0.951 0.960 0.912 0.754 Probable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:Q9N4G9]
100. B0035.4 pfd-4 5006 7.371 0.925 0.957 0.931 0.957 0.929 0.876 0.932 0.864 Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q17435]

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Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA