C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for F52E1.13

Gene ID Gene Name Reads Transcripts Annotation
F52E1.13 lmd-3 25047 F52E1.13a, F52E1.13b.1, F52E1.13b.2, F52E1.13c, F52E1.13d LysM Domain (peptidoglycan binding) protein [Source:RefSeq peptide;Acc:NP_872149]

Genes with expression patterns similar to F52E1.13

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. F52E1.13 lmd-3 25047 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LysM Domain (peptidoglycan binding) protein [Source:RefSeq peptide;Acc:NP_872149]
2. F49C12.8 rpn-7 15688 7.773 0.975 0.990 0.982 0.990 0.975 0.971 0.938 0.952 26S proteasome non-ATPase regulatory subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q20585]
3. F56H1.4 rpt-5 16849 7.754 0.977 0.984 0.985 0.984 0.969 0.962 0.947 0.946 proteasome Regulatory Particle, ATPase-like [Source:RefSeq peptide;Acc:NP_491672]
4. T22D1.9 rpn-1 25674 7.751 0.969 0.982 0.972 0.982 0.981 0.978 0.950 0.937 proteasome Regulatory Particle, Non-ATPase-like [Source:RefSeq peptide;Acc:NP_501064]
5. B0205.3 rpn-10 16966 7.746 0.990 0.979 0.959 0.979 0.973 0.978 0.949 0.939 proteasome Regulatory Particle, Non-ATPase-like [Source:RefSeq peptide;Acc:NP_492809]
6. F23F12.6 rpt-3 6433 7.741 0.980 0.968 0.941 0.968 0.972 0.984 0.966 0.962 Probable 26S protease regulatory subunit 6B [Source:UniProtKB/Swiss-Prot;Acc:P46502]
7. E01A2.6 akir-1 25022 7.741 0.980 0.980 0.987 0.980 0.976 0.975 0.949 0.914 AKIRin (conserved nuclear protein family) homolog [Source:RefSeq peptide;Acc:NP_491304]
8. F29G9.5 rpt-2 18618 7.733 0.978 0.989 0.983 0.989 0.979 0.957 0.927 0.931 Probable 26S protease regulatory subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:O16368]
9. F53C11.5 F53C11.5 7387 7.73 0.977 0.976 0.977 0.976 0.977 0.971 0.946 0.930
10. C06A1.1 cdc-48.1 52743 7.716 0.984 0.989 0.983 0.989 0.977 0.945 0.907 0.942 Transitional endoplasmic reticulum ATPase homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P54811]
11. C47B2.3 tba-2 31086 7.713 0.980 0.980 0.978 0.980 0.954 0.977 0.930 0.934 Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P34690]
12. K01G5.7 tbb-1 26039 7.712 0.983 0.968 0.971 0.968 0.965 0.983 0.926 0.948 TuBulin, Beta [Source:RefSeq peptide;Acc:NP_499367]
13. M18.7 aly-3 7342 7.707 0.979 0.977 0.966 0.977 0.979 0.976 0.938 0.915 Ref/ALY RNA export adaptor family [Source:RefSeq peptide;Acc:NP_001076697]
14. C23G10.4 rpn-2 17587 7.702 0.957 0.981 0.965 0.981 0.980 0.974 0.911 0.953 26S proteasome non-ATPase regulatory subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q18115]
15. C34C12.3 pph-6 12139 7.7 0.957 0.979 0.980 0.979 0.969 0.955 0.921 0.960 Putative serine/threonine-protein phosphatase pph-6 [Source:UniProtKB/Swiss-Prot;Acc:Q09496]
16. K04F10.4 bli-4 9790 7.697 0.978 0.983 0.957 0.983 0.971 0.977 0.906 0.942 Endoprotease bli-4 [Source:UniProtKB/Swiss-Prot;Acc:P51559]
17. F16A11.3 ppfr-1 12640 7.697 0.969 0.981 0.988 0.981 0.974 0.954 0.938 0.912 Protein Phosphatase Four Regulatory subunit [Source:RefSeq peptide;Acc:NP_001122456]
18. Y49E10.1 rpt-6 7806 7.693 0.968 0.963 0.973 0.963 0.982 0.943 0.935 0.966 proteasome Regulatory Particle, ATPase-like [Source:RefSeq peptide;Acc:NP_499609]
19. C13G3.3 pptr-2 13586 7.691 0.979 0.975 0.977 0.975 0.973 0.970 0.935 0.907 Protein Phosphatase 2A (Two A) Regulatory subunit [Source:RefSeq peptide;Acc:NP_001256283]
20. F20G4.3 nmy-2 27210 7.684 0.973 0.987 0.966 0.987 0.962 0.950 0.912 0.947 Non-muscle MYosin [Source:RefSeq peptide;Acc:NP_492186]
21. R12E2.3 rpn-8 11194 7.684 0.967 0.987 0.966 0.987 0.976 0.950 0.922 0.929 proteasome Regulatory Particle, Non-ATPase-like [Source:RefSeq peptide;Acc:NP_491319]
22. D1037.4 rab-8 14097 7.682 0.977 0.978 0.981 0.978 0.981 0.945 0.885 0.957 RAB family [Source:RefSeq peptide;Acc:NP_491199]
23. Y54G2A.5 dml-1 7705 7.679 0.956 0.983 0.958 0.983 0.970 0.971 0.941 0.917 yeast DiM Like [Source:RefSeq peptide;Acc:NP_001023505]
24. C41C4.8 cdc-48.2 7843 7.67 0.969 0.980 0.951 0.980 0.968 0.971 0.906 0.945 Transitional endoplasmic reticulum ATPase homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:P54812]
25. Y75B7AL.4 rga-4 7903 7.668 0.973 0.959 0.974 0.959 0.970 0.967 0.944 0.922 Rho GTPase Activating protein [Source:RefSeq peptide;Acc:NP_001041201]
26. F58A4.10 ubc-7 29547 7.663 0.975 0.964 0.961 0.964 0.977 0.985 0.934 0.903 Probable ubiquitin-conjugating enzyme E2 7 [Source:UniProtKB/Swiss-Prot;Acc:P34477]
27. ZK858.7 ZK858.7 2817 7.659 0.977 0.979 0.962 0.979 0.972 0.937 0.906 0.947
28. C04F12.10 fce-1 5550 7.656 0.959 0.969 0.971 0.969 0.948 0.963 0.938 0.939 CAAX prenyl protease 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9XVE5]
29. Y110A2AR.2 ubc-15 15884 7.654 0.946 0.968 0.985 0.968 0.952 0.978 0.937 0.920 UBiquitin Conjugating enzyme [Source:RefSeq peptide;Acc:NP_494397]
30. ZK783.2 upp-1 10266 7.649 0.950 0.978 0.960 0.978 0.952 0.972 0.902 0.957 Uridine PhosPhorylase [Source:RefSeq peptide;Acc:NP_498671]
31. ZK20.5 rpn-12 9173 7.648 0.977 0.961 0.933 0.961 0.981 0.963 0.936 0.936 26S proteasome non-ATPase regulatory subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q23449]
32. Y59A8A.3 tcc-1 20646 7.647 0.932 0.972 0.940 0.972 0.980 0.963 0.954 0.934 Transmembrane and Coiled-Coil protein [Source:RefSeq peptide;Acc:NP_507506]
33. C50C3.8 bath-42 18053 7.645 0.975 0.988 0.975 0.988 0.963 0.924 0.927 0.905 BTB and MATH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:P34371]
34. K02D10.5 snap-29 8184 7.638 0.980 0.967 0.959 0.967 0.977 0.974 0.928 0.886 Soluble NSF attachment protein 29 [Source:UniProtKB/Swiss-Prot;Acc:P83351]
35. C36E8.5 tbb-2 19603 7.638 0.970 0.963 0.938 0.963 0.968 0.941 0.940 0.955 Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P52275]
36. C52E4.4 rpt-1 16724 7.638 0.956 0.964 0.973 0.964 0.986 0.937 0.923 0.935 26S protease regulatory subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q18787]
37. H05C05.2 H05C05.2 3688 7.636 0.963 0.946 0.988 0.946 0.983 0.975 0.903 0.932
38. F10G7.8 rpn-5 16014 7.634 0.973 0.984 0.979 0.984 0.955 0.964 0.901 0.894 proteasome Regulatory Particle, Non-ATPase-like [Source:RefSeq peptide;Acc:NP_494835]
39. K04G2.11 scbp-2 9123 7.633 0.961 0.970 0.972 0.970 0.955 0.949 0.915 0.941 SECIS (SeCis) Binding Protein homolog, partial [Source:RefSeq peptide;Acc:NP_492214]
40. C43G2.1 paqr-1 17585 7.625 0.975 0.976 0.990 0.976 0.952 0.918 0.891 0.947 Progestin and adipoQ receptor-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94177]
41. ZK40.1 acl-9 4364 7.619 0.960 0.966 0.963 0.966 0.971 0.985 0.897 0.911 ACyLtransferase-like [Source:RefSeq peptide;Acc:NP_504644]
42. W08F4.8 cdc-37 23424 7.616 0.983 0.982 0.989 0.982 0.954 0.942 0.897 0.887 Probable Hsp90 co-chaperone cdc37 [Source:UniProtKB/Swiss-Prot;Acc:O02108]
43. K09H11.3 rga-3 6319 7.615 0.977 0.959 0.970 0.959 0.965 0.950 0.927 0.908 Rho GTPase Activating protein [Source:RefSeq peptide;Acc:NP_504503]
44. F59E12.5 npl-4.2 5567 7.61 0.963 0.968 0.958 0.968 0.977 0.952 0.891 0.933 NPL (yeast Nuclear Protein Localization) homolog [Source:RefSeq peptide;Acc:NP_495094]
45. F09G2.8 F09G2.8 2899 7.609 0.979 0.976 0.982 0.976 0.956 0.939 0.901 0.900 Probable phospholipase D F09G2.8 [Source:UniProtKB/Swiss-Prot;Acc:O17405]
46. K02B2.3 mcu-1 20448 7.608 0.966 0.985 0.984 0.985 0.977 0.943 0.897 0.871 Mitochondrial Calcium Uniporter [Source:RefSeq peptide;Acc:NP_500892]
47. F30A10.6 sac-1 4596 7.607 0.963 0.972 0.979 0.972 0.973 0.956 0.859 0.933 SAC1 PIP phosphatase (yeast Suppressor of ACtin) homolog [Source:RefSeq peptide;Acc:NP_492518]
48. T20F5.2 pbs-4 8985 7.606 0.974 0.982 0.981 0.982 0.937 0.925 0.892 0.933 Proteasome subunit beta type-2 [Source:UniProtKB/Swiss-Prot;Acc:P91477]
49. E04F6.5 acdh-12 6267 7.606 0.947 0.976 0.957 0.976 0.955 0.983 0.899 0.913 Acyl CoA DeHydrogenase [Source:RefSeq peptide;Acc:NP_001022062]
50. F23F1.8 rpt-4 14303 7.601 0.984 0.980 0.974 0.980 0.954 0.912 0.889 0.928 Probable 26S protease regulatory subunit 10B [Source:UniProtKB/Swiss-Prot;Acc:O17071]
51. Y32H12A.5 paqr-2 6739 7.599 0.953 0.954 0.991 0.954 0.983 0.981 0.937 0.846 Progestin and AdipoQ Receptor family [Source:RefSeq peptide;Acc:NP_498148]
52. D2085.3 D2085.3 2166 7.597 0.973 0.940 0.970 0.940 0.967 0.947 0.926 0.934
53. C30C11.2 rpn-3 14437 7.597 0.981 0.970 0.970 0.970 0.957 0.935 0.904 0.910 26S proteasome non-ATPase regulatory subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q04908]
54. T26A5.8 T26A5.8 2463 7.589 0.961 0.938 0.947 0.938 0.967 0.979 0.932 0.927
55. F55A11.2 syx-5 6410 7.589 0.957 0.962 0.961 0.962 0.961 0.957 0.890 0.939 Putative syntaxin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q20797]
56. W02B12.2 rsp-2 14764 7.584 0.978 0.985 0.972 0.985 0.922 0.927 0.909 0.906 Probable splicing factor, arginine/serine-rich 2 [Source:UniProtKB/Swiss-Prot;Acc:Q23120]
57. D2096.4 sqv-1 5567 7.583 0.965 0.974 0.950 0.974 0.961 0.969 0.926 0.864 SQuashed Vulva [Source:RefSeq peptide;Acc:NP_001294050]
58. R166.5 mnk-1 28617 7.582 0.980 0.978 0.973 0.978 0.966 0.950 0.868 0.889 MAP kinase iNtegrating Kinase (MNK) homolog [Source:RefSeq peptide;Acc:NP_496272]
59. Y71F9B.7 plk-2 6594 7.58 0.957 0.974 0.968 0.974 0.971 0.943 0.918 0.875 Serine/threonine-protein kinase plk-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9N2L7]
60. T09E8.1 noca-1 12494 7.58 0.924 0.987 0.944 0.987 0.956 0.947 0.922 0.913 NOn-Centrosomal microtubule Array [Source:RefSeq peptide;Acc:NP_872199]
61. T20G5.1 chc-1 32620 7.579 0.979 0.983 0.973 0.983 0.951 0.899 0.911 0.900 Probable clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:P34574]
62. F29D11.2 capg-1 9440 7.579 0.963 0.961 0.963 0.961 0.981 0.954 0.903 0.893 CAP-G condensin subunit [Source:RefSeq peptide;Acc:NP_492128]
63. F30A10.10 usp-48 11536 7.577 0.967 0.980 0.978 0.980 0.958 0.917 0.896 0.901 Ubiquitin carboxyl-terminal hydrolase [Source:RefSeq peptide;Acc:NP_492524]
64. C32F10.1 obr-4 7473 7.573 0.975 0.984 0.967 0.984 0.930 0.953 0.877 0.903 Oxysterol-binding protein [Source:RefSeq peptide;Acc:NP_491691]
65. T16H12.5 bath-43 10021 7.572 0.944 0.988 0.959 0.988 0.967 0.953 0.881 0.892 BTB and MATH domain-containing protein 43 [Source:UniProtKB/Swiss-Prot;Acc:P34568]
66. R74.4 dnj-16 3492 7.569 0.951 0.971 0.950 0.971 0.980 0.941 0.920 0.885 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_001254890]
67. T08B2.7 ech-1.2 16663 7.568 0.946 0.974 0.971 0.974 0.966 0.965 0.879 0.893 Enoyl-CoA Hydratase [Source:RefSeq peptide;Acc:NP_491789]
68. C02F5.6 henn-1 5223 7.567 0.929 0.965 0.944 0.965 0.978 0.967 0.944 0.875 HEN1 (RNA 3'end methyltransferase) of Nematode [Source:RefSeq peptide;Acc:NP_741251]
69. C02F5.9 pbs-6 20120 7.565 0.970 0.991 0.975 0.991 0.952 0.903 0.861 0.922 Proteasome subunit beta type-1 [Source:UniProtKB/Swiss-Prot;Acc:P34286]
70. Y40B10A.1 lbp-9 30119 7.564 0.954 0.972 0.977 0.972 0.967 0.911 0.894 0.917 Fatty acid-binding protein homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q965W1]
71. M18.8 dhhc-6 7929 7.562 0.970 0.956 0.980 0.956 0.964 0.949 0.895 0.892 Palmitoyltransferase [Source:RefSeq peptide;Acc:NP_502302]
72. F56H1.7 oxy-5 12425 7.558 0.940 0.939 0.959 0.939 0.968 0.952 0.942 0.919
73. F25B5.4 ubq-1 19910 7.558 0.954 0.965 0.886 0.965 0.982 0.976 0.908 0.922 Polyubiquitin-A Ubiquitin Ubiquitin-related [Source:UniProtKB/Swiss-Prot;Acc:P0CG71]
74. W10D5.3 gei-17 8809 7.554 0.941 0.982 0.979 0.982 0.958 0.946 0.894 0.872 E3 SUMO-protein ligase gei-17 [Source:UniProtKB/Swiss-Prot;Acc:Q94361]
75. F23C8.4 ubxn-1 25368 7.553 0.959 0.962 0.914 0.962 0.966 0.936 0.927 0.927 UBX-containing protein in Nematodes [Source:RefSeq peptide;Acc:NP_490978]
76. Y119D3B.15 dss-1 19116 7.552 0.956 0.974 0.970 0.974 0.938 0.908 0.905 0.927 Probable 26S proteasome complex subunit dss-1 [Source:UniProtKB/Swiss-Prot;Acc:Q95Y72]
77. F40F9.1 xbx-6 23586 7.551 0.952 0.976 0.981 0.976 0.975 0.917 0.887 0.887 X-BoX promoter element regulated [Source:RefSeq peptide;Acc:NP_741597]
78. F36H9.3 dhs-13 21659 7.551 0.971 0.979 0.983 0.979 0.947 0.901 0.874 0.917 DeHydrogenases, Short chain [Source:RefSeq peptide;Acc:NP_503501]
79. C34G6.7 stam-1 9506 7.548 0.968 0.965 0.956 0.965 0.952 0.965 0.893 0.884 Signal transducing adapter molecule 1 [Source:UniProtKB/Swiss-Prot;Acc:O01498]
80. Y53C12A.1 wee-1.3 16766 7.547 0.949 0.949 0.971 0.949 0.971 0.942 0.914 0.902 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 [Source:UniProtKB/Swiss-Prot;Acc:O18209]
81. T27A3.2 usp-5 11388 7.545 0.979 0.983 0.984 0.983 0.966 0.934 0.887 0.829 Ubiquitin carboxyl-terminal hydrolase [Source:RefSeq peptide;Acc:NP_491765]
82. F59A6.6 rnh-1.0 8629 7.544 0.958 0.945 0.959 0.945 0.966 0.960 0.903 0.908 RNase H [Source:RefSeq peptide;Acc:NP_001040787]
83. F26F4.6 F26F4.6 2992 7.544 0.967 0.975 0.939 0.975 0.970 0.925 0.914 0.879
84. T12A2.8 gen-1 10490 7.543 0.930 0.982 0.950 0.982 0.970 0.943 0.903 0.883 GEN1 Holliday junction resolvase homolog [Source:RefSeq peptide;Acc:NP_498361]
85. Y97E10AL.3 Y97E10AL.3 3022 7.542 0.958 0.953 0.951 0.953 0.946 0.955 0.924 0.902
86. F55B12.3 sel-10 10304 7.542 0.969 0.984 0.954 0.984 0.952 0.917 0.879 0.903 F-box/WD repeat-containing protein sel-10 [Source:UniProtKB/Swiss-Prot;Acc:Q93794]
87. C03C10.1 kin-19 53180 7.541 0.944 0.954 0.965 0.954 0.959 0.897 0.926 0.942 Casein kinase I isoform alpha [Source:UniProtKB/Swiss-Prot;Acc:P42168]
88. Y71H2B.10 apb-1 10457 7.54 0.981 0.978 0.983 0.978 0.958 0.913 0.897 0.852 AP complex subunit beta [Source:RefSeq peptide;Acc:NP_001022937]
89. C06E7.3 sams-4 24373 7.539 0.973 0.970 0.952 0.970 0.969 0.921 0.905 0.879 Probable S-adenosylmethionine synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:P50306]
90. R11D1.1 R11D1.1 2431 7.539 0.967 0.949 0.980 0.949 0.965 0.904 0.902 0.923
91. B0464.5 spk-1 35112 7.539 0.946 0.974 0.980 0.974 0.949 0.879 0.896 0.941 Serine/threonine-protein kinase spk-1 [Source:UniProtKB/Swiss-Prot;Acc:Q03563]
92. ZK353.8 ubxn-4 6411 7.538 0.939 0.970 0.947 0.970 0.955 0.935 0.888 0.934 UBX domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P34631]
93. T05G5.8 vps-53 3157 7.533 0.966 0.961 0.955 0.961 0.959 0.933 0.914 0.884 Vacuolar protein sorting-associated protein 53 homolog [Source:UniProtKB/Swiss-Prot;Acc:P34561]
94. F49D11.9 tag-296 7973 7.533 0.940 0.978 0.945 0.978 0.967 0.925 0.885 0.915
95. ZK520.4 cul-2 6732 7.533 0.950 0.954 0.948 0.954 0.965 0.928 0.899 0.935 Cullin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q17390]
96. C56C10.3 vps-32.1 24107 7.532 0.971 0.987 0.981 0.987 0.952 0.973 0.836 0.845 related to yeast Vacuolar Protein Sorting factor [Source:RefSeq peptide;Acc:NP_495337]
97. T05A6.2 cki-2 13153 7.532 0.969 0.987 0.982 0.987 0.938 0.924 0.903 0.842 CKI family (Cyclin-dependent Kinase Inhibitor) [Source:RefSeq peptide;Acc:NP_001022309]
98. Y92C3B.2 uaf-1 14981 7.531 0.977 0.982 0.988 0.982 0.930 0.899 0.871 0.902 Splicing factor U2AF 65 kDa subunit [Source:UniProtKB/Swiss-Prot;Acc:P90978]
99. Y45F10D.9 sas-6 9563 7.53 0.955 0.978 0.946 0.978 0.969 0.905 0.918 0.881 Spindle assembly abnormal protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O62479]
100. F44E7.5 F44E7.5 1980 7.528 0.943 0.962 0.954 0.962 0.949 0.932 0.909 0.917

There are 3099 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA