C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Experiment herm2, section s9.

Sample reads: 167,683. Showing entries 1-100.

No. Gene ID Gene Name Counts CPM Annotation
1. T20G5.7 dod-6 3180.00 18964.75 Downstream Of DAF-16 (regulated by DAF-16) [Source:RefSeq peptide;Acc:NP_499257]
2. T27E9.1 ant-1.1 1420.00 8468.54 Adenine Nucleotide Translocator [Source:RefSeq peptide;Acc:NP_001022799]
3. T04C12.6 act-1 1240.00 7395.06 Actin-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DM41]
4. F09F7.2 mlc-3 1140.00 6798.69 Myosin, essential light chain [Source:UniProtKB/Swiss-Prot;Acc:P53014]
5. M03F4.2 act-4 1140.00 6798.69 Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]
6. F07A5.7 unc-15 1060.00 6321.58 Paramyosin [Source:UniProtKB/Swiss-Prot;Acc:P10567]
7. K08D12.6 K08D12.6 1060.00 6321.58
8. T04C12.4 act-3 1010.00 6023.40 Actin-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DM41]
9. F11C3.3 unc-54 782.00 4663.66 Myosin-4 [Source:UniProtKB/Swiss-Prot;Acc:P02566]
10. Y82E9BR.3 Y82E9BR.3 708.00 4222.34 ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9BKS0]
11. Y105E8B.1 lev-11 664.00 3959.94 Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Swiss-Prot;Acc:Q22866]
12. F01D4.4 egl-21 651.00 3882.41
13. C14B9.1 hsp-12.2 627.00 3739.28 Heat shock protein Hsp-12.2 [Source:UniProtKB/Swiss-Prot;Acc:P34328]
14. C36E6.3 mlc-1 627.00 3739.28 Myosin regulatory light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:P19625]
15. F52D10.3 ftt-2 594.00 3542.47 14-3-3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q20655]
16. K10B3.9 mai-1 594.00 3542.47 ATPase inhibitor mai-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P37209]
17. R05G6.7 vdac-1 594.00 3542.47 Probable voltage-dependent anion-selective channel [Source:UniProtKB/Swiss-Prot;Acc:Q21752]
18. C18A11.7 dim-1 575.00 3429.16 Disorganized muscle protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q18066]
19. F02A9.3 far-2 565.00 3369.52 Fatty-acid and retinol-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P34383]
20. F46H5.3 F46H5.3 565.00 3369.52 Probable arginine kinase F46H5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q10454]
21. F52H3.7 lec-2 565.00 3369.52 gaLECtin [Source:RefSeq peptide;Acc:NP_496165]
22. R102.2 R102.2 565.00 3369.52
23. C51E3.7 egl-3 548.00 3268.14 Prohormone convertase 2; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5ECN9]
24. F33A8.2 nlp-18 531.00 3166.76 Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_496365]
25. T23E7.4 nlp-6 531.00 3166.76 Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_001257288]
26. T25F10.6 clik-1 531.00 3166.76 CaLponIn-liKe proteins [Source:RefSeq peptide;Acc:NP_001024158]
27. C34E10.6 atp-2 468.00 2791.04 ATP synthase subunit beta, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P46561]
28. F01G4.6 F01G4.6 462.00 2755.26 Phosphate carrier protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P40614]
29. F28H1.2 cpn-3 456.00 2719.47 CalPoNin [Source:RefSeq peptide;Acc:NP_491282]
30. Y69A2AR.18 Y69A2AR.18 456.00 2719.47
31. R10E11.8 vha-1 450.00 2683.69 V-type proton ATPase 16 kDa proteolipid subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q21898]
32. F25H2.5 ndk-1 439.00 2618.09 Nucleoside diphosphate kinase [Source:RefSeq peptide;Acc:NP_492761]
33. R06C7.10 myo-1 439.00 2618.09 Myosin-1 [Source:UniProtKB/Swiss-Prot;Acc:P02567]
34. F27C1.7 atp-3 422.00 2516.71 ATP synthase subunit [Source:RefSeq peptide;Acc:NP_001021420]
35. C34F6.2 col-178 417.00 2486.89 COLlagen [Source:RefSeq peptide;Acc:NP_509869]
36. F57B1.4 col-160 417.00 2486.89 COLlagen [Source:RefSeq peptide;Acc:NP_506284]
37. T05A1.2 col-122 412.00 2457.07 COLlagen [Source:RefSeq peptide;Acc:NP_501700]
38. F49D11.8 cpn-4 407.00 2427.25 CalPoNin [Source:RefSeq peptide;Acc:NP_492849]
39. E04A4.7 cyc-2.1 402.00 2397.43 Cytochrome c 2.1 [Source:UniProtKB/Swiss-Prot;Acc:P19974]
40. F20A1.1 F20A1.1 402.00 2397.43
41. F33A8.3 cey-1 402.00 2397.43 C. Elegans Y-box [Source:RefSeq peptide;Acc:NP_496366]
42. K02F2.2 ahcy-1 402.00 2397.43 Adenosylhomocysteinase [Source:UniProtKB/Swiss-Prot;Acc:P27604]
43. T18D3.4 myo-2 393.00 2343.76 Myosin-2 [Source:UniProtKB/Swiss-Prot;Acc:P12845]
44. Y116F11B.1 daf-28 388.00 2313.94
45. C24F3.6 col-124 384.00 2290.08 COLlagen [Source:RefSeq peptide;Acc:NP_501867]
46. F11H8.3 col-8 384.00 2290.08 Cuticle collagen 8 [Source:UniProtKB/Swiss-Prot;Acc:P18833]
47. W03F8.1 tni-4 384.00 2290.08 Troponin I 4 [Source:UniProtKB/Swiss-Prot;Acc:O44572]
48. RIT6P.22 379.00 2260.26
49. F01G12.5 let-2 375.00 2236.41 Collagen alpha-2(IV) chain [Source:UniProtKB/Swiss-Prot;Acc:P17140]
50. F54C1.7 pat-10 375.00 2236.41 Paralysed Arrest at Two-fold [Source:RefSeq peptide;Acc:NP_491501]
51. F55D10.2 rpl-25.1 371.00 2212.55 60S ribosomal protein L23a 1 [Source:UniProtKB/Swiss-Prot;Acc:P48162]
52. T04C12.5 act-2 371.00 2212.55 Actin-2 [Source:UniProtKB/Swiss-Prot;Acc:P10984]
53. T20G5.8 T20G5.8 371.00 2212.55
54. K12G11.3 sodh-1 362.00 2158.88 Alcohol dehydrogenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q17334]
55. M18.1 col-129 354.00 2111.17 COLlagen [Source:RefSeq peptide;Acc:NP_001293923]
56. T03D8.3 sbt-1 354.00 2111.17 Seven B Two (mammalian 7BT prohormone convertase chaperone) homolog [Source:RefSeq peptide;Acc:NP_508020]
57. T20G5.2 cts-1 350.00 2087.32 Probable citrate synthase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34575]
58. F20H11.3 mdh-2 346.00 2063.46 Probable malate dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O02640]
59. F11G11.11 col-20 339.00 2021.71 COLlagen [Source:RefSeq peptide;Acc:NP_494879]
60. F54E7.2 rps-12 339.00 2021.71 40S ribosomal protein S12 [Source:UniProtKB/Swiss-Prot;Acc:P49196]
61. Y49A3A.3 Y49A3A.3 339.00 2021.71
62. C06A8.3 C06A8.3 335.00 1997.86
63. ZC21.3 ZC21.3 331.00 1974.00
64. C12D12.2 glt-1 328.00 1956.11 Excitatory amino acid transporter [Source:UniProtKB/Swiss-Prot;Acc:Q10901]
65. F26F12.1 col-140 324.00 1932.26 COLlagen [Source:RefSeq peptide;Acc:NP_504525]
66. F53A9.10 tnt-2 324.00 1932.26 TropoNin T [Source:RefSeq peptide;Acc:NP_001024703]
67. F15A4.6 F15A4.6 321.00 1914.37
68. C23H4.1 cab-1 317.00 1890.51
69. ZC15.8 pqn-94 314.00 1872.62 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_507911]
70. H28O16.1 H28O16.1 310.00 1848.77 ATP synthase subunit alpha, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XXK1]
71. C04F12.4 rpl-14 307.00 1830.87 Ribosomal Protein, Large subunit [Source:RefSeq peptide;Acc:NP_492576]
72. E03D2.1 nlp-13 307.00 1830.87 Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_504170]
73. T27C4.1 T27C4.1 307.00 1830.87
74. T05D4.1 aldo-1 294.00 1753.35 Fructose-bisphosphate aldolase 1 [Source:UniProtKB/Swiss-Prot;Acc:P54216]
75. W06H8.8 ttn-1 291.00 1735.45 TiTiN family [Source:RefSeq peptide;Acc:NP_001024198]
76. Y48B6A.14 hmg-1.1 291.00 1735.45 HMG [Source:RefSeq peptide;Acc:NP_496970]
77. F25H5.3 pyk-1 288.00 1717.56 Pyruvate kinase [Source:RefSeq peptide;Acc:NP_492459]
78. RIT6P.424 288.00 1717.56
79. F13D12.4 alh-8 285.00 1699.67 Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52713]
80. W09C5.6 rpl-31 282.00 1681.78 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q9U332]
81. T21B10.2 enol-1 279.00 1663.89 Enolase [Source:UniProtKB/Swiss-Prot;Acc:Q27527]
82. T21H3.3 cmd-1 279.00 1663.89 Calmodulin [Source:UniProtKB/Swiss-Prot;Acc:O16305]
83. ZK809.8 ZK809.8 279.00 1663.89
84. F42G8.12 isp-1 276.00 1646.00 Cytochrome b-c1 complex subunit Rieske, mitochondrial [Source:RefSeq peptide;Acc:NP_501361]
85. R02F2.1 R02F2.1 276.00 1646.00
86. Y73B6BL.35 Y73B6BL.35 276.00 1646.00
87. C44B12.5 perm-4 273.00 1628.11 PERMeable eggshell [Source:RefSeq peptide;Acc:NP_500041]
88. C49F5.1 sams-1 273.00 1628.11 Probable S-adenosylmethionine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:O17680]
89. C44B12.2 ost-1 270.00 1610.21 SPARC [Source:UniProtKB/Swiss-Prot;Acc:P34714]
90. F11E6.3 F11E6.3 270.00 1610.21
91. F08B6.4 unc-87 267.00 1592.32 Unc-87 protein [Source:UniProtKB/TrEMBL;Acc:Q6LD30]
92. K02F3.3 far-8 267.00 1592.32 Fatty Acid/Retinol binding protein [Source:RefSeq peptide;Acc:NP_497273]
93. F31E3.5 eef-1A.1 264.00 1574.43 Elongation factor 1-alpha [Source:UniProtKB/Swiss-Prot;Acc:P53013]
94. C49G7.3 C49G7.3 261.00 1556.54
95. C17H12.14 vha-8 259.00 1544.61 Vacuolar H ATPase [Source:RefSeq peptide;Acc:NP_501040]
96. B0034.3 casy-1 253.00 1508.83 CAlSYntenin/Alcadein homolog [Source:RefSeq peptide;Acc:NP_001021110]
97. F26E4.6 F26E4.6 253.00 1508.83
98. M7.1 let-70 253.00 1508.83 Ubiquitin-conjugating enzyme E2 2 [Source:UniProtKB/Swiss-Prot;Acc:P35129]
99. F56B6.4 gyg-1 251.00 1496.90 Glycogenin-1 [Source:UniProtKB/Swiss-Prot;Acc:H2KYQ5]
100. Y67H2A.5 Y67H2A.5 251.00 1496.90
First Previous 1 2 3 Next Last
Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA