C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for F55A11.3

Gene ID Gene Name Reads Transcripts Annotation
F55A11.3 sel-11 6513 F55A11.3 E3 ubiquitin-protein ligase hrd-1 [Source:UniProtKB/Swiss-Prot;Acc:Q20798]

Genes with expression patterns similar to F55A11.3

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. F55A11.3 sel-11 6513 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 E3 ubiquitin-protein ligase hrd-1 [Source:UniProtKB/Swiss-Prot;Acc:Q20798]
2. F25D7.1 cup-2 14977 7.717 0.940 0.984 0.957 0.984 0.966 0.983 0.956 0.947 Derlin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93561]
3. F45D3.5 sel-1 14277 7.675 0.972 0.969 0.948 0.969 0.952 0.975 0.928 0.962 Suppressor/Enhancer of Lin-12 [Source:RefSeq peptide;Acc:NP_506144]
4. F57B10.10 dad-1 22596 7.667 0.952 0.968 0.969 0.968 0.959 0.976 0.933 0.942 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad-1 [Source:UniProtKB/Swiss-Prot;Acc:P52872]
5. W09G3.3 tag-229 8943 7.62 0.917 0.940 0.942 0.940 0.979 0.987 0.954 0.961
6. M01A10.3 ostd-1 16979 7.617 0.949 0.959 0.944 0.959 0.970 0.976 0.911 0.949 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:P91390]
7. R07G3.1 cdc-42 35737 7.616 0.968 0.975 0.976 0.975 0.964 0.957 0.928 0.873 Cell division control protein 42 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q05062]
8. Y46H3A.6 gly-7 7098 7.611 0.971 0.964 0.948 0.964 0.943 0.960 0.910 0.951 Probable N-acetylgalactosaminyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:O61397]
9. T05B11.3 clic-1 19766 7.608 0.955 0.973 0.956 0.973 0.966 0.958 0.895 0.932 Clathrin LIght Chain [Source:RefSeq peptide;Acc:NP_504999]
10. F33G12.5 golg-2 7434 7.605 0.975 0.975 0.963 0.975 0.945 0.922 0.914 0.936 GOLGi associated coiled-coil protein homolog [Source:RefSeq peptide;Acc:NP_494929]
11. C39F7.4 rab-1 44088 7.585 0.963 0.960 0.971 0.960 0.941 0.965 0.881 0.944 RAB family [Source:RefSeq peptide;Acc:NP_503397]
12. Y37D8A.10 hpo-21 14222 7.566 0.964 0.963 0.957 0.963 0.942 0.940 0.896 0.941 Probable signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XWW1]
13. F25D7.2 tag-353 21026 7.555 0.967 0.972 0.965 0.972 0.950 0.959 0.865 0.905
14. T09A5.11 ostb-1 29365 7.554 0.960 0.946 0.959 0.946 0.924 0.934 0.931 0.954 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [Source:UniProtKB/Swiss-Prot;Acc:P45971]
15. Y71F9AL.10 Y71F9AL.10 4976 7.547 0.925 0.941 0.937 0.941 0.969 0.956 0.955 0.923
16. ZK652.3 ufm-1 12647 7.534 0.972 0.967 0.960 0.967 0.957 0.938 0.877 0.896 Ubiquitin-fold modifier 1 [Source:UniProtKB/Swiss-Prot;Acc:P34661]
17. Y56A3A.21 trap-4 58702 7.526 0.923 0.954 0.918 0.954 0.954 0.954 0.937 0.932 TRanslocon-Associated Protein [Source:RefSeq peptide;Acc:NP_499554]
18. T07A5.2 unc-50 4604 7.526 0.946 0.953 0.966 0.953 0.958 0.928 0.922 0.900
19. F28D1.11 dpm-3 5418 7.524 0.947 0.942 0.928 0.942 0.937 0.971 0.902 0.955 Probable dolichol-phosphate mannosyltransferase subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVV5]
20. D1014.3 snap-1 16776 7.521 0.974 0.970 0.968 0.970 0.953 0.942 0.852 0.892 SNAP (Soluble NSF Attachment Protein) homolog [Source:RefSeq peptide;Acc:NP_505099]
21. F15C11.2 ubql-1 22588 7.518 0.953 0.935 0.947 0.935 0.951 0.964 0.873 0.960 UBiQuiLin [Source:RefSeq peptide;Acc:NP_740884]
22. F52B11.1 cfp-1 8570 7.508 0.942 0.968 0.941 0.968 0.919 0.937 0.915 0.918 CFP1 (CpG-binding protein, CXXC Finger Protein 1) homolog [Source:RefSeq peptide;Acc:NP_001023214]
23. H21P03.3 sms-1 7737 7.492 0.966 0.954 0.966 0.954 0.954 0.956 0.861 0.881 Phosphatidylcholine:ceramide cholinephosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9U3D4]
24. C14B1.1 pdi-1 14109 7.488 0.957 0.939 0.968 0.939 0.889 0.967 0.907 0.922 Protein disulfide-isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q17967]
25. ZC395.3 toc-1 6437 7.484 0.963 0.959 0.972 0.959 0.960 0.901 0.867 0.903 similar to Transporter Of divalent Cations [Source:RefSeq peptide;Acc:NP_001033385]
26. ZK688.8 gly-3 8885 7.483 0.979 0.962 0.944 0.962 0.902 0.973 0.838 0.923 Polypeptide N-acetylgalactosaminyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:P34678]
27. Y63D3A.6 dnj-29 11593 7.472 0.961 0.937 0.957 0.937 0.951 0.941 0.867 0.921 DNaJ domain (prokaryotic heat shock protein) [Source:RefSeq peptide;Acc:NP_493463]
28. R05D3.7 unc-116 19451 7.472 0.947 0.921 0.953 0.921 0.926 0.956 0.891 0.957 Kinesin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:P34540]
29. C46C2.1 wnk-1 15184 7.461 0.927 0.962 0.976 0.962 0.924 0.917 0.899 0.894 Serine/threonine-protein kinase WNK [Source:UniProtKB/Swiss-Prot;Acc:X5M5N0]
30. ZK1307.9 ZK1307.9 2631 7.457 0.937 0.898 0.963 0.898 0.950 0.975 0.914 0.922 Coiled-coil domain-containing protein 130 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q09651]
31. Y79H2A.6 arx-3 17398 7.453 0.958 0.966 0.976 0.966 0.940 0.923 0.842 0.882 ARp2/3 compleX component [Source:RefSeq peptide;Acc:NP_499570]
32. F40F9.6 aagr-3 20254 7.449 0.924 0.933 0.940 0.933 0.951 0.933 0.911 0.924 Acid Alpha Glucosidase Relate [Source:RefSeq peptide;Acc:NP_001263844]
33. Y105E8A.8 Y105E8A.8 1328 7.448 0.961 0.895 0.914 0.895 0.954 0.984 0.915 0.930
34. R07B5.9 lsy-12 8400 7.448 0.941 0.969 0.968 0.969 0.917 0.928 0.866 0.890 Histone acetyltransferase [Source:RefSeq peptide;Acc:NP_001256148]
35. M7.1 let-70 85699 7.441 0.944 0.974 0.960 0.974 0.950 0.931 0.865 0.843 Ubiquitin-conjugating enzyme E2 2 [Source:UniProtKB/Swiss-Prot;Acc:P35129]
36. T12A2.2 stt-3 18807 7.44 0.973 0.923 0.970 0.923 0.869 0.946 0.927 0.909 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt-3 [Source:UniProtKB/Swiss-Prot;Acc:P46975]
37. F38H4.9 let-92 25368 7.427 0.969 0.963 0.959 0.963 0.962 0.928 0.846 0.837 Serine/threonine-protein phosphatase [Source:RefSeq peptide;Acc:NP_502247]
38. D1022.1 ubc-6 9722 7.425 0.978 0.977 0.961 0.977 0.913 0.894 0.866 0.859 UBiquitin Conjugating enzyme [Source:RefSeq peptide;Acc:NP_001040755]
39. Y105E8A.3 Y105E8A.3 3429 7.425 0.941 0.907 0.971 0.907 0.903 0.961 0.892 0.943
40. R10E11.1 cbp-1 20447 7.423 0.968 0.970 0.961 0.970 0.943 0.901 0.852 0.858
41. C06H2.6 lmtr-3 11122 7.42 0.959 0.978 0.962 0.978 0.946 0.890 0.868 0.839 Late endosomal/lysosomal adaptor, Mapk (MAPK) and mToR (MTOR) activator homolog [Source:RefSeq peptide;Acc:NP_741627]
42. F13H10.4 mogs-1 3777 7.412 0.964 0.953 0.965 0.953 0.926 0.922 0.894 0.835 Mannosyl-oligosaccharide glucosidase [Source:UniProtKB/Swiss-Prot;Acc:Q19426]
43. F38E11.5 copb-2 19313 7.411 0.921 0.950 0.955 0.950 0.932 0.956 0.865 0.882 Probable coatomer subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:Q20168]
44. F23C8.6 did-2 4233 7.411 0.935 0.930 0.931 0.930 0.934 0.957 0.899 0.895 Doa4-Independent Degradation, homologous to yeast Did2 [Source:RefSeq peptide;Acc:NP_490974]
45. F59E10.3 copz-1 5962 7.41 0.940 0.950 0.913 0.950 0.942 0.932 0.850 0.933 Probable coatomer subunit zeta [Source:UniProtKB/Swiss-Prot;Acc:O17901]
46. F12F6.6 sec-24.1 10754 7.407 0.963 0.957 0.947 0.957 0.939 0.902 0.835 0.907 yeast SEC homolog [Source:RefSeq peptide;Acc:NP_502178]
47. R11E3.8 dpf-5 8806 7.4 0.938 0.975 0.955 0.975 0.945 0.940 0.861 0.811 Dipeptidyl Peptidase Four (IV) family [Source:RefSeq peptide;Acc:NP_500647]
48. Y57A10A.18 pqn-87 31844 7.397 0.925 0.954 0.984 0.954 0.937 0.899 0.866 0.878 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_496594]
49. T12D8.6 mlc-5 19567 7.396 0.966 0.974 0.968 0.974 0.972 0.900 0.878 0.764 Myosin-2 essential light chain [Source:UniProtKB/Swiss-Prot;Acc:Q9XVI9]
50. T26A5.9 dlc-1 59038 7.395 0.955 0.973 0.971 0.973 0.952 0.903 0.792 0.876 Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799]
51. F53G12.1 rab-11.1 28814 7.395 0.897 0.924 0.956 0.924 0.950 0.929 0.873 0.942 RAB family [Source:RefSeq peptide;Acc:NP_490675]
52. T23H2.5 rab-10 31382 7.392 0.964 0.964 0.964 0.964 0.926 0.915 0.841 0.854 RAB family [Source:RefSeq peptide;Acc:NP_491857]
53. R144.4 wip-1 14168 7.391 0.982 0.967 0.970 0.967 0.962 0.909 0.862 0.772 Wiskott-Aldrich syndrome protein (WASP)-Interacting Protein and gene assignment [Source:RefSeq peptide;Acc:NP_741123]
54. C16C10.7 rnf-5 7067 7.391 0.976 0.951 0.955 0.951 0.904 0.944 0.829 0.881 RING finger protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q09463]
55. R05F9.10 sgt-1 35541 7.39 0.954 0.954 0.975 0.954 0.971 0.930 0.855 0.797 Small Glutamine-rich Tetratrico repeat protein [Source:RefSeq peptide;Acc:NP_494893]
56. ZC376.7 atfs-1 7905 7.384 0.954 0.966 0.976 0.966 0.835 0.942 0.851 0.894 Activating Transcription Factor associated with Stress [Source:RefSeq peptide;Acc:NP_506515]
57. C16C10.5 rnf-121 4043 7.384 0.968 0.943 0.949 0.943 0.935 0.910 0.874 0.862 RING finger protein 121 [Source:RefSeq peptide;Acc:NP_497832]
58. Y54G2A.2 atln-1 16823 7.38 0.969 0.973 0.967 0.973 0.931 0.925 0.766 0.876 ATLastiN (endoplasmic reticulum GTPase) related [Source:RefSeq peptide;Acc:NP_001023492]
59. Y111B2A.20 hut-1 4122 7.38 0.924 0.930 0.978 0.930 0.912 0.980 0.864 0.862 yeast Homolog UDP-Gal Transporter [Source:RefSeq peptide;Acc:NP_001293604]
60. T22D1.4 ribo-1 11776 7.377 0.948 0.908 0.980 0.908 0.887 0.910 0.917 0.919 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9GZH4]
61. Y57G11C.10 gdi-1 38397 7.372 0.955 0.963 0.959 0.963 0.905 0.913 0.822 0.892 GDI (RabGDP Dissociation Inhibitor) family [Source:RefSeq peptide;Acc:NP_001041043]
62. Y54G2A.31 ubc-13 22367 7.371 0.921 0.943 0.972 0.943 0.943 0.889 0.855 0.905 Ubiquitin-conjugating enzyme E2 13 [Source:UniProtKB/Swiss-Prot;Acc:Q95XX0]
63. R53.7 aakg-5 8491 7.371 0.929 0.959 0.951 0.959 0.962 0.958 0.928 0.725 AMP-Activated protein Kinase Gamma subunit [Source:RefSeq peptide;Acc:NP_871971]
64. F37C12.7 acs-4 25192 7.371 0.967 0.960 0.974 0.960 0.909 0.866 0.863 0.872 fatty Acid CoA Synthetase family [Source:RefSeq peptide;Acc:NP_498568]
65. Y65B4BR.4 wwp-1 23206 7.366 0.967 0.956 0.971 0.956 0.944 0.872 0.828 0.872 WW domain Protein (E3 ubiquitin ligase) [Source:RefSeq peptide;Acc:NP_001293271]
66. K05C4.1 pbs-5 17648 7.365 0.965 0.953 0.974 0.953 0.972 0.919 0.815 0.814 Proteasome subunit beta type [Source:RefSeq peptide;Acc:NP_493558]
67. Y59E9AL.7 nbet-1 13073 7.364 0.943 0.959 0.967 0.959 0.921 0.957 0.766 0.892 Nematode homolog of yeast BET1 (Blocked Early in Transport) [Source:RefSeq peptide;Acc:NP_001023538]
68. F25D1.1 ppm-1 16992 7.359 0.977 0.974 0.960 0.974 0.956 0.855 0.856 0.807 Protein Phosphatase, Mg2+/Mn2+ dependent [Source:RefSeq peptide;Acc:NP_001122929]
69. Y73B6BL.6 sqd-1 41708 7.357 0.915 0.948 0.970 0.948 0.939 0.887 0.903 0.847 homologous to Drosophila SQD (squid) protein [Source:RefSeq peptide;Acc:NP_001023573]
70. C15H11.4 dhs-22 21674 7.354 0.973 0.952 0.982 0.952 0.962 0.893 0.845 0.795 DeHydrogenases, Short chain [Source:RefSeq peptide;Acc:NP_506570]
71. Y113G7B.16 cdkr-3 1826 7.352 0.956 0.929 0.897 0.929 0.897 0.942 0.876 0.926 CDK5RAP3-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9U2Y2]
72. F40F9.7 drap-1 10298 7.35 0.971 0.962 0.965 0.962 0.955 0.845 0.785 0.905 DRAP1 corepressor homolog [Source:RefSeq peptide;Acc:NP_001023907]
73. C30C11.4 hsp-110 27892 7.35 0.951 0.939 0.965 0.939 0.951 0.861 0.894 0.850 Heat Shock Protein [Source:RefSeq peptide;Acc:NP_498868]
74. Y87G2A.9 ubc-14 3265 7.343 0.933 0.888 0.951 0.888 0.949 0.940 0.857 0.937 UBiquitin Conjugating enzyme [Source:RefSeq peptide;Acc:NP_493381]
75. Y92H12A.1 src-1 6186 7.343 0.971 0.950 0.954 0.950 0.899 0.899 0.835 0.885 Tyrosine protein-kinase src-1 [Source:UniProtKB/Swiss-Prot;Acc:G5EE56]
76. Y55B1BM.1 stim-1 3427 7.341 0.911 0.954 0.924 0.954 0.949 0.944 0.851 0.854 Stromal interaction molecule 1 [Source:UniProtKB/Swiss-Prot;Acc:G5EF60]
77. C50F4.14 nstp-10 4932 7.338 0.958 0.955 0.930 0.955 0.939 0.897 0.855 0.849 GDP-fucose transporter [Source:UniProtKB/Swiss-Prot;Acc:Q968A5]
78. B0041.2 ain-2 13092 7.338 0.964 0.971 0.964 0.971 0.938 0.898 0.784 0.848 ALG-1 INteracting protein [Source:RefSeq peptide;Acc:NP_001249682]
79. F08F8.3 kap-1 31437 7.335 0.955 0.971 0.963 0.971 0.946 0.881 0.846 0.802 Kinesin-Associated Protein [Source:RefSeq peptide;Acc:NP_001021246]
80. C24F3.1 tram-1 21190 7.335 0.930 0.954 0.922 0.954 0.934 0.900 0.840 0.901 Translocating chain-associated membrane protein [Source:RefSeq peptide;Acc:NP_501869]
81. C18A3.5 tiar-1 25400 7.335 0.957 0.971 0.968 0.971 0.946 0.847 0.843 0.832 TIA-1/TIAL RNA binding protein homolog [Source:RefSeq peptide;Acc:NP_495121]
82. H15N14.2 nsf-1 3900 7.334 0.953 0.935 0.929 0.935 0.941 0.905 0.807 0.929 Vesicle-fusing ATPase [Source:UniProtKB/Swiss-Prot;Acc:Q94392]
83. C47E12.7 C47E12.7 2630 7.334 0.945 0.888 0.962 0.888 0.960 0.979 0.780 0.932 Ribosomal RNA processing protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q18674]
84. C47E12.5 uba-1 36184 7.331 0.973 0.981 0.970 0.981 0.943 0.878 0.814 0.791 UBA (human ubiquitin) related [Source:RefSeq peptide;Acc:NP_001033405]
85. F08F8.2 hmgr-1 6483 7.331 0.952 0.933 0.957 0.933 0.942 0.927 0.878 0.809 3-hydroxy-3-methylglutaryl coenzyme A reductase [Source:RefSeq peptide;Acc:NP_498626]
86. R05D11.3 ran-4 15494 7.331 0.957 0.961 0.964 0.961 0.932 0.859 0.873 0.824 Probable nuclear transport factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q21735]
87. R151.7 hsp-75 3265 7.324 0.950 0.857 0.974 0.857 0.950 0.947 0.861 0.928 Heat Shock Protein [Source:RefSeq peptide;Acc:NP_741220]
88. F26H11.2 nurf-1 13015 7.324 0.976 0.967 0.966 0.967 0.904 0.816 0.813 0.915 Nucleosome-remodeling factor subunit NURF301-like [Source:UniProtKB/Swiss-Prot;Acc:Q6BER5]
89. Y71F9AL.17 copa-1 20285 7.324 0.953 0.946 0.962 0.946 0.865 0.895 0.850 0.907 Coatomer subunit alpha [Source:RefSeq peptide;Acc:NP_491069]
90. B0286.4 ntl-2 14207 7.322 0.967 0.982 0.946 0.982 0.921 0.836 0.837 0.851 NOT-Like (yeast CCR4/NOT complex component) [Source:RefSeq peptide;Acc:NP_494772]
91. C47G2.5 saps-1 7555 7.318 0.969 0.975 0.950 0.975 0.951 0.848 0.830 0.820 SAPS (phosphatase associated) domain protein [Source:RefSeq peptide;Acc:NP_496414]
92. Y48A6B.13 spat-2 21773 7.316 0.937 0.956 0.956 0.956 0.934 0.914 0.849 0.814 Suppressor of PAr-Two defect [Source:RefSeq peptide;Acc:NP_001255103]
93. ZK20.3 rad-23 35070 7.315 0.972 0.979 0.975 0.979 0.957 0.862 0.865 0.726
94. B0035.2 dnj-2 3905 7.315 0.972 0.957 0.956 0.957 0.941 0.888 0.860 0.784 DnaJ homolog dnj-2 [Source:UniProtKB/Swiss-Prot;Acc:Q17433]
95. Y6B3A.1 agef-1 6674 7.312 0.941 0.956 0.945 0.956 0.955 0.912 0.865 0.782 Arf-1 Guanine nucleotide Exchange Factor homolog [Source:RefSeq peptide;Acc:NP_001021798]
96. Y62E10A.10 emc-3 8138 7.31 0.957 0.951 0.943 0.951 0.942 0.863 0.824 0.879 EMC Endoplasmic Membrane protein Complex (yeast EMC) homolog [Source:RefSeq peptide;Acc:NP_502575]
97. F43E2.7 mtch-1 30689 7.302 0.939 0.958 0.967 0.958 0.950 0.820 0.834 0.876 MiTochondrial Carrier Homolog [Source:RefSeq peptide;Acc:NP_871994]
98. R10E12.1 alx-1 10631 7.297 0.959 0.948 0.972 0.948 0.932 0.883 0.782 0.873 Apoptosis-linked gene 2-interacting protein X 1 [Source:UniProtKB/Swiss-Prot;Acc:P34552]
99. Y38A8.2 pbs-3 18117 7.297 0.965 0.954 0.971 0.954 0.968 0.869 0.882 0.734 Proteasome subunit beta type-3 [Source:UniProtKB/Swiss-Prot;Acc:Q23237]
100. K05C4.11 sol-2 16560 7.296 0.945 0.951 0.936 0.951 0.939 0.886 0.850 0.838 Suppressor Of Lurcher movement defect [Source:RefSeq peptide;Acc:NP_493560]

There are 2421 more genes with r >= 0.95  Show all


Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA