C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Experiment herm2, section s6.

Sample reads: 85,325. Showing entries 1-100.

No. Gene ID Gene Name Counts CPM Annotation
1. F09F7.2 mlc-3 3180.00 37269.12 Myosin, essential light chain [Source:UniProtKB/Swiss-Prot;Acc:P53014]
2. M03F4.2 act-4 1240.00 14532.61 Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]
3. T04C12.6 act-1 1240.00 14532.61 Actin-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DM41]
4. C36E6.3 mlc-1 1140.00 13360.63 Myosin regulatory light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:P19625]
5. T04C12.4 act-3 1010.00 11837.05 Actin-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DM41]
6. W03F8.1 tni-4 920.00 10782.26 Troponin I 4 [Source:UniProtKB/Swiss-Prot;Acc:O44572]
7. T27E9.1 ant-1.1 828.00 9704.03 Adenine Nucleotide Translocator [Source:RefSeq peptide;Acc:NP_001022799]
8. C14B9.1 hsp-12.2 804.00 9422.76 Heat shock protein Hsp-12.2 [Source:UniProtKB/Swiss-Prot;Acc:P34328]
9. F07A5.7 unc-15 761.00 8918.80 Paramyosin [Source:UniProtKB/Swiss-Prot;Acc:P10567]
10. F11C3.3 unc-54 743.00 8707.85 Myosin-4 [Source:UniProtKB/Swiss-Prot;Acc:P02566]
11. R06C7.10 myo-1 725.00 8496.89 Myosin-1 [Source:UniProtKB/Swiss-Prot;Acc:P02567]
12. K08D12.6 K08D12.6 708.00 8297.65
13. Y105E8B.1 lev-11 693.00 8121.85 Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Swiss-Prot;Acc:Q22866]
14. Y82E9BR.3 Y82E9BR.3 678.00 7946.06 ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9BKS0]
15. F02A9.3 far-2 651.00 7629.62 Fatty-acid and retinol-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P34383]
16. T18D3.4 myo-2 627.00 7348.34 Myosin-2 [Source:UniProtKB/Swiss-Prot;Acc:P12845]
17. C53C9.2 C53C9.2 575.00 6738.91
18. C06A8.3 C06A8.3 531.00 6223.24
19. F49D11.8 cpn-4 531.00 6223.24 CalPoNin [Source:RefSeq peptide;Acc:NP_492849]
20. W06H8.8 ttn-1 487.00 5707.57 TiTiN family [Source:RefSeq peptide;Acc:NP_001024198]
21. Y69A2AR.18 Y69A2AR.18 487.00 5707.57
22. R05G6.7 vdac-1 450.00 5273.93 Probable voltage-dependent anion-selective channel [Source:UniProtKB/Swiss-Prot;Acc:Q21752]
23. C34E10.6 atp-2 444.00 5203.61 ATP synthase subunit beta, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P46561]
24. F52H3.7 lec-2 428.00 5016.09 gaLECtin [Source:RefSeq peptide;Acc:NP_496165]
25. F46H5.3 F46H5.3 407.00 4769.98 Probable arginine kinase F46H5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q10454]
26. T25F10.6 clik-1 393.00 4605.90 CaLponIn-liKe proteins [Source:RefSeq peptide;Acc:NP_001024158]
27. F01G4.6 F01G4.6 388.00 4547.30 Phosphate carrier protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P40614]
28. K10B3.9 mai-1 388.00 4547.30 ATPase inhibitor mai-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P37209]
29. K12G11.3 sodh-1 375.00 4394.94 Alcohol dehydrogenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q17334]
30. C18A11.7 dim-1 362.00 4242.58 Disorganized muscle protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q18066]
31. ZC449.5 ZC449.5 358.00 4195.71
32. T20G5.2 cts-1 314.00 3680.03 Probable citrate synthase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34575]
33. F27C1.7 atp-3 300.00 3515.95 ATP synthase subunit [Source:RefSeq peptide;Acc:NP_001021420]
34. F20H11.3 mdh-2 288.00 3375.32 Probable malate dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O02640]
35. RIT6P.22 276.00 3234.68
36. F25H2.5 ndk-1 267.00 3129.20 Nucleoside diphosphate kinase [Source:RefSeq peptide;Acc:NP_492761]
37. H28O16.1 H28O16.1 267.00 3129.20 ATP synthase subunit alpha, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XXK1]
38. F28H1.2 cpn-3 253.00 2965.12 CalPoNin [Source:RefSeq peptide;Acc:NP_491282]
39. C36E6.5 mlc-2 245.00 2871.36 Myosin regulatory light chain 2 [Source:UniProtKB/Swiss-Prot;Acc:P19626]
40. F32A5.4 F32A5.4 245.00 2871.36
41. T08B1.2 tnt-4 243.00 2847.92 TropoNin T [Source:RefSeq peptide;Acc:NP_001263832]
42. T04C12.5 act-2 235.00 2754.16 Actin-2 [Source:UniProtKB/Swiss-Prot;Acc:P10984]
43. F53A9.10 tnt-2 228.00 2672.13 TropoNin T [Source:RefSeq peptide;Acc:NP_001024703]
44. ZK673.7 tnc-2 225.00 2636.97 Troponin C, isoform 2 [Source:UniProtKB/Swiss-Prot;Acc:Q09665]
45. F01G12.5 let-2 223.00 2613.53 Collagen alpha-2(IV) chain [Source:UniProtKB/Swiss-Prot;Acc:P17140]
46. F33A8.3 cey-1 223.00 2613.53 C. Elegans Y-box [Source:RefSeq peptide;Acc:NP_496366]
47. Y67H2A.5 Y67H2A.5 221.00 2590.09
48. F13D12.4 alh-8 214.00 2508.05 Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52713]
49. E04A4.7 cyc-2.1 211.00 2472.89 Cytochrome c 2.1 [Source:UniProtKB/Swiss-Prot;Acc:P19974]
50. F52D10.3 ftt-2 209.00 2449.45 14-3-3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q20655]
51. T23E7.2 T23E7.2 204.00 2390.85
52. F26E4.6 F26E4.6 202.00 2367.41
53. F42G8.12 isp-1 202.00 2367.41 Cytochrome b-c1 complex subunit Rieske, mitochondrial [Source:RefSeq peptide;Acc:NP_501361]
54. F54C1.7 pat-10 202.00 2367.41 Paralysed Arrest at Two-fold [Source:RefSeq peptide;Acc:NP_491501]
55. T28D6.3 T28D6.3 200.00 2343.97
56. F58G4.1 myo-5 198.00 2320.53 MYOsin heavy chain structural genes [Source:RefSeq peptide;Acc:NP_505094]
57. ZC15.8 pqn-94 198.00 2320.53 Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_507911]
58. F02E8.1 asb-2 183.00 2144.73 ATP Synthase B homolog [Source:RefSeq peptide;Acc:NP_508770]
59. T07C12.9 anmt-3 183.00 2144.73 Amine N-MethylTransferase [Source:RefSeq peptide;Acc:NP_505563]
60. F11E6.3 F11E6.3 179.00 2097.85
61. W09C5.8 W09C5.8 175.00 2050.97
62. C10G8.5 ncx-2 173.00 2027.53 Na/Ca eXchangers [Source:RefSeq peptide;Acc:NP_504414]
63. T05A1.2 col-122 171.00 2004.09 COLlagen [Source:RefSeq peptide;Acc:NP_501700]
64. F47B7.1 F47B7.1 167.00 1957.21 UPF0057 membrane protein F47B7.1 [Source:UniProtKB/Swiss-Prot;Acc:Q20516]
65. C34F6.2 col-178 165.00 1933.77 COLlagen [Source:RefSeq peptide;Acc:NP_509869]
66. T21B10.2 enol-1 165.00 1933.77 Enolase [Source:UniProtKB/Swiss-Prot;Acc:Q27527]
67. C44B12.2 ost-1 163.00 1910.34 SPARC [Source:UniProtKB/Swiss-Prot;Acc:P34714]
68. M18.1 col-129 163.00 1910.34 COLlagen [Source:RefSeq peptide;Acc:NP_001293923]
69. Y73B6BL.24 acp-6 163.00 1910.34 ACid Phosphatase family [Source:RefSeq peptide;Acc:NP_500982]
70. F57B1.4 col-160 162.00 1898.62 COLlagen [Source:RefSeq peptide;Acc:NP_506284]
71. T20B3.2 tni-3 162.00 1898.62 Troponin I 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9XUN9]
72. F49E2.5 F49E2.5 160.00 1875.18
73. F08B6.4 unc-87 158.00 1851.74 Unc-87 protein [Source:UniProtKB/TrEMBL;Acc:Q6LD30]
74. F25H5.3 pyk-1 158.00 1851.74 Pyruvate kinase [Source:RefSeq peptide;Acc:NP_492459]
75. F11H8.3 col-8 154.00 1804.86 Cuticle collagen 8 [Source:UniProtKB/Swiss-Prot;Acc:P18833]
76. K02F2.2 ahcy-1 154.00 1804.86 Adenosylhomocysteinase [Source:UniProtKB/Swiss-Prot;Acc:P27604]
77. F02A9.2 far-1 152.00 1781.42 Fatty-acid and retinol-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P34382]
78. Y51A2D.14 Y51A2D.14 147.00 1722.82
79. C06H2.1 atp-5 143.00 1675.94 ATP synthase subunit [Source:RefSeq peptide;Acc:NP_505829]
80. Y79H2A.1 brp-1 143.00 1675.94 Bypass of Response to Pheromone in yeast [Source:RefSeq peptide;Acc:NP_001022952]
81. C45B2.1 C45B2.1 142.00 1664.22
82. T05D4.1 aldo-1 142.00 1664.22 Fructose-bisphosphate aldolase 1 [Source:UniProtKB/Swiss-Prot;Acc:P54216]
83. Y37D8A.14 cco-2 142.00 1664.22 Cytochrome c oxidase subunit 5A, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P55954]
84. R02F2.1 R02F2.1 140.00 1640.78
85. T22B11.5 ogdh-1 140.00 1640.78 2-oxoglutarate dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O61199]
86. C09D1.1 unc-89 138.00 1617.34 Muscle M-line assembly protein unc-89 [Source:UniProtKB/Swiss-Prot;Acc:O01761]
87. C16C10.11 har-1 135.00 1582.18 Hemiasterlin resistant protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q09254]
88. C53A5.1 ril-1 135.00 1582.18 RNAi-Induced Longevity [Source:RefSeq peptide;Acc:NP_506598]
89. F11G11.11 col-20 135.00 1582.18 COLlagen [Source:RefSeq peptide;Acc:NP_494879]
90. F22E10.3 pgp-14 135.00 1582.18 P-GlycoProtein related [Source:RefSeq peptide;Acc:NP_510128]
91. F14F7.1 col-98 130.00 1523.58 COLlagen [Source:RefSeq peptide;Acc:NP_499703]
92. LLC1.3 dld-1 130.00 1523.58 Dihydrolipoyl dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O17953]
93. R10E11.8 vha-1 128.00 1500.14 V-type proton ATPase 16 kDa proteolipid subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q21898]
94. C09B8.6 hsp-25 127.00 1488.42 Heat Shock Protein [Source:RefSeq peptide;Acc:NP_001024374]
95. T21H3.3 cmd-1 127.00 1488.42 Calmodulin [Source:UniProtKB/Swiss-Prot;Acc:O16305]
96. W03G11.1 col-181 127.00 1488.42 COLlagen [Source:RefSeq peptide;Acc:NP_001041295]
97. C49F5.1 sams-1 125.00 1464.98 Probable S-adenosylmethionine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:O17680]
98. F29B9.11 F29B9.11 125.00 1464.98
99. M7.1 let-70 125.00 1464.98 Ubiquitin-conjugating enzyme E2 2 [Source:UniProtKB/Swiss-Prot;Acc:P35129]
100. T02H6.11 T02H6.11 125.00 1464.98
First Previous 1 2 3 Next Last
Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA