C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Results for F55F3.3

Gene ID Gene Name Reads Transcripts Annotation
F55F3.3 nkb-3 19665 F55F3.3a, F55F3.3b Probable sodium/potassium-transporting ATPase subunit beta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9XUY5]

Genes with expression patterns similar to F55F3.3

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. F55F3.3 nkb-3 19665 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Probable sodium/potassium-transporting ATPase subunit beta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9XUY5]
2. K10B3.9 mai-1 161647 7.183 0.967 0.926 0.930 0.926 0.857 0.843 0.898 0.836 ATPase inhibitor mai-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P37209]
3. K04D7.3 gta-1 20812 7.022 0.950 0.857 0.956 0.857 0.928 0.853 0.839 0.782 Probable 4-aminobutyrate aminotransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q21217]
4. F55D10.2 rpl-25.1 95984 6.969 0.959 0.880 0.883 0.880 0.879 0.883 0.812 0.793 60S ribosomal protein L23a 1 [Source:UniProtKB/Swiss-Prot;Acc:P48162]
5. Y77E11A.15 col-106 105434 6.871 0.960 0.856 0.868 0.856 0.911 0.876 0.832 0.712 COLlagen [Source:RefSeq peptide;Acc:NP_741318]
6. W05B2.5 col-93 64768 6.864 0.961 0.843 0.923 0.843 0.848 0.846 0.868 0.732 COLlagen [Source:RefSeq peptide;Acc:NP_499409]
7. W03G11.1 col-181 100180 6.811 0.951 0.862 0.863 0.862 0.916 0.897 0.745 0.715 COLlagen [Source:RefSeq peptide;Acc:NP_001041295]
8. T05A1.2 col-122 163233 6.798 0.956 0.859 0.880 0.859 0.890 0.851 0.801 0.702 COLlagen [Source:RefSeq peptide;Acc:NP_501700]
9. F54C1.7 pat-10 205614 6.731 0.956 0.839 0.866 0.839 0.845 0.815 0.841 0.730 Paralysed Arrest at Two-fold [Source:RefSeq peptide;Acc:NP_491501]
10. F26F12.1 col-140 160999 6.724 0.975 0.867 0.941 0.867 0.809 0.860 0.783 0.622 COLlagen [Source:RefSeq peptide;Acc:NP_504525]
11. F15A2.1 col-184 74319 6.718 0.964 0.805 0.852 0.805 0.918 0.870 0.798 0.706 COLlagen [Source:RefSeq peptide;Acc:NP_001257223]
12. W05B2.6 col-92 29501 6.709 0.953 0.837 0.938 0.837 0.823 0.868 0.771 0.682 COLlagen [Source:RefSeq peptide;Acc:NP_499408]
13. F13H8.7 upb-1 16734 6.693 0.961 0.841 0.907 0.841 0.853 0.788 0.799 0.703 UreidoPropionase Beta [Source:RefSeq peptide;Acc:NP_495261]
14. C09G5.5 col-80 59933 6.653 0.969 0.871 0.939 0.871 0.774 0.783 0.725 0.721 Putative cuticle collagen 80 [Source:UniProtKB/Swiss-Prot;Acc:Q09456]
15. C34F6.2 col-178 152954 6.647 0.967 0.839 0.935 0.839 0.761 0.877 0.782 0.647 COLlagen [Source:RefSeq peptide;Acc:NP_509869]
16. F09B9.2 unc-115 18081 6.639 0.833 0.793 0.856 0.793 0.809 0.957 0.705 0.893 Putative actin-binding protein UNC-115 [Source:UniProtKB/TrEMBL;Acc:O77133]
17. C24F3.6 col-124 156254 6.633 0.970 0.858 0.957 0.858 0.849 0.732 0.813 0.596 COLlagen [Source:RefSeq peptide;Acc:NP_501867]
18. T15B7.4 col-142 51426 6.611 0.960 0.809 0.921 0.809 0.853 0.917 0.718 0.624 COLlagen [Source:RefSeq peptide;Acc:NP_504736]
19. C34F6.3 col-179 100364 6.565 0.960 0.854 0.925 0.854 0.785 0.875 0.744 0.568 COLlagen [Source:RefSeq peptide;Acc:NP_509870]
20. F57B1.3 col-159 28012 6.464 0.959 0.789 0.849 0.789 0.859 0.834 0.763 0.622 COLlagen [Source:RefSeq peptide;Acc:NP_506283]
21. F38A3.1 col-81 56859 6.439 0.973 0.865 0.922 0.865 0.777 0.757 0.684 0.596 COLlagen [Source:RefSeq peptide;Acc:NP_496361]
22. C53B4.5 col-119 131020 6.389 0.957 0.829 0.950 0.829 0.578 0.868 0.755 0.623 COLlagen [Source:RefSeq peptide;Acc:NP_501561]
23. B0213.2 nlp-27 38894 6.376 0.970 0.756 0.902 0.756 0.816 0.810 0.550 0.816 Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_504111]
24. F11G11.11 col-20 174687 6.371 0.953 0.825 0.950 0.825 0.773 0.699 0.696 0.650 COLlagen [Source:RefSeq peptide;Acc:NP_494879]
25. M18.1 col-129 100644 6.37 0.966 0.876 0.932 0.876 0.823 0.710 0.690 0.497 COLlagen [Source:RefSeq peptide;Acc:NP_001293923]
26. F41F3.4 col-139 56412 6.356 0.959 0.884 0.910 0.884 0.776 0.757 0.651 0.535 COLlagen [Source:RefSeq peptide;Acc:NP_504252]
27. F41E7.5 fipr-21 37102 6.335 0.950 0.783 0.928 0.783 0.842 0.818 0.594 0.637 FIP (Fungus-Induced Protein) Related [Source:RefSeq peptide;Acc:NP_509727]
28. B0213.3 nlp-28 12751 6.274 0.950 0.748 0.874 0.748 0.837 0.818 0.654 0.645 Neuropeptide-like protein 28 QWGYGGY-amide GYGGYGGY-amide GMYGGY-amide GMYGGW-amide [Source:UniProtKB/Swiss-Prot;Acc:O44665]
29. F35B12.7 nlp-24 9351 5.795 0.951 0.708 0.816 0.708 0.703 0.725 0.564 0.620 Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_505946]
30. F46H6.2 dgk-2 4591 5.773 0.558 0.674 0.802 0.674 0.679 0.975 0.582 0.829 Diacylglycerol kinase [Source:RefSeq peptide;Acc:NP_001024679]
31. B0001.6 eri-12 6103 5.538 0.546 0.553 0.708 0.553 0.738 0.968 0.692 0.780 Enhanced RNAI (RNA interference) [Source:RefSeq peptide;Acc:NP_502310]
32. Y71G12A.3 tub-2 4497 5.516 0.584 0.594 0.670 0.594 0.731 0.958 0.573 0.812 TUBby-related [Source:RefSeq peptide;Acc:NP_001293352]
33. K10B3.10 spc-1 12653 5.374 0.340 0.603 0.657 0.603 0.664 0.957 0.681 0.869 SPeCtrin [Source:RefSeq peptide;Acc:NP_001256999]
34. T13F3.7 T13F3.7 397 5.265 0.954 - 0.860 - 0.862 0.962 0.864 0.763
35. C34G6.2 tyr-4 4411 5.179 0.960 0.665 - 0.665 0.781 0.855 0.715 0.538 TYRosinase [Source:RefSeq peptide;Acc:NP_491709]
36. T20B5.1 apa-2 3042 5.144 0.377 0.571 0.442 0.571 0.751 0.971 0.582 0.879 AdaPtin, Alpha chain (clathrin associated complex) [Source:RefSeq peptide;Acc:NP_509572]
37. W05B2.1 col-94 30273 5.13 0.952 - 0.940 - 0.864 0.874 0.785 0.715 COLlagen [Source:RefSeq peptide;Acc:NP_499410]
38. D1005.1 acly-1 8877 4.967 0.325 0.499 0.440 0.499 0.683 0.968 0.686 0.867 Probable ATP-citrate synthase [Source:UniProtKB/Swiss-Prot;Acc:P53585]
39. C17H12.2 C17H12.2 5955 4.811 0.491 0.218 0.711 0.218 0.671 0.961 0.703 0.838
40. K08F11.1 K08F11.1 307 4.808 0.964 - 0.650 - 0.825 0.933 0.835 0.601
41. T20B3.1 T20B3.1 369 4.571 0.758 - 0.383 - 0.798 0.972 0.745 0.915
42. F42G2.2 F42G2.2 0 4.517 0.679 - 0.750 - 0.694 0.973 0.566 0.855
43. F52E4.8 ztf-13 1373 4.373 0.495 0.605 0.546 0.605 0.485 0.950 0.687 - Zinc finger putative Transcription Factor family [Source:RefSeq peptide;Acc:NP_508531]
44. R03E1.1 sym-4 2393 4.345 0.494 0.504 0.612 0.504 0.620 0.952 - 0.659 SYM-4; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EEV4]
45. C48E7.10 spp-15 5610 4.243 0.963 - 0.755 - 0.575 0.643 0.652 0.655 SaPosin-like Protein family [Source:RefSeq peptide;Acc:NP_491803]
46. K09A9.2 rab-14 5898 4.176 0.114 0.307 0.173 0.307 0.795 0.953 0.639 0.888 RAB family [Source:RefSeq peptide;Acc:NP_510572]
47. F16B4.5 F16B4.5 0 4.168 0.951 - 0.934 - 0.874 0.823 0.275 0.311
48. C31B8.9 C31B8.9 0 4.083 0.960 - 0.891 - 0.754 0.738 0.205 0.535
49. ZK669.1 spv-1 2155 3.929 0.408 - 0.598 - 0.560 0.952 0.541 0.870 Spermathecal Physiology Variant [Source:RefSeq peptide;Acc:NP_495666]
50. F59F5.3 F59F5.3 0 3.503 - - 0.558 - 0.730 0.973 0.502 0.740
51. Y60A3A.23 Y60A3A.23 0 3.4 0.482 - 0.449 - 0.451 0.955 0.327 0.736
52. T25B9.11 T25B9.11 0 3.312 0.503 - 0.647 - 0.592 0.955 0.615 -
53. Y57G7A.2 Y57G7A.2 0 2.944 - - - - 0.550 0.962 0.582 0.850
54. F17H10.1 F17H10.1 2677 2.898 0.480 0.532 0.400 0.532 - 0.954 - -
55. C52A10.2 C52A10.2 408 2.763 - - - - 0.541 0.951 0.596 0.675 Carboxylic ester hydrolase [Source:RefSeq peptide;Acc:NP_504398]
56. F01G10.8 daf-14 1458 2.717 - - 0.402 - - 0.959 0.475 0.881 Smad protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5EEP2]
57. F53C11.8 swan-1 1974 2.485 0.123 0.306 0.192 0.306 - 0.973 0.585 - Seven WD repeats, AN11 family [Source:RefSeq peptide;Acc:NP_506418]
58. F54B11.3 unc-84 2491 2.463 0.143 0.229 0.159 0.229 0.738 0.965 - - Nuclear migration and anchoring protein unc-84 [Source:UniProtKB/Swiss-Prot;Acc:Q20745]
59. C52B9.3 coel-1 600 2.173 - - - - - 0.952 0.398 0.823 tubulin folding COfactor E-Like protein [Source:RefSeq peptide;Acc:NP_741764]
60. F40C5.1 F40C5.1 0 2.144 - - 0.437 - - 0.965 0.742 -
61. T12A7.4 lips-5 180 1.89 - - 0.628 - 0.310 0.952 - - LIPaSe related [Source:RefSeq peptide;Acc:NP_001255589]
62. K08A8.3 coh-1 732 1.873 0.061 0.325 0.210 0.325 - 0.952 - - COHesin family [Source:RefSeq peptide;Acc:NP_509262]
63. C35D10.1 C35D10.1 5595 1.755 0.109 0.342 - 0.342 - 0.962 - - ER membrane protein complex subunit 7 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8WQG1]
64. F35F10.11 arrd-18 311 0.97 - - - - - 0.970 - - ARRestin Domain protein [Source:RefSeq peptide;Acc:NP_503916]
65. T20D4.6 arrd-22 180 0.964 - - - - - 0.964 - - ARRestin Domain protein [Source:RefSeq peptide;Acc:NP_503955]
66. T22F7.3 T22F7.3 0 0.953 - - - - - 0.953 - -

Refine r cutoff to:    Show

Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA