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Results for LLC1.1

Gene ID Gene Name Reads Transcripts Annotation
LLC1.1 tra-3 1765 LLC1.1a, LLC1.1b Calpain-5 [Source:UniProtKB/Swiss-Prot;Acc:Q22036]

Genes with expression patterns similar to LLC1.1

Nr. Gene ID Gene Name Reads Σ scores herm1 herm2 herm3 herm4 male1 male2 male3 male4 Annotation
1. LLC1.1 tra-3 1765 6 1.000 1.000 1.000 1.000 - 1.000 1.000 - Calpain-5 [Source:UniProtKB/Swiss-Prot;Acc:Q22036]
2. D2030.9 wdr-23 12287 5.11 0.852 0.953 0.924 0.953 - 0.793 0.635 - DDB1- and CUL4-associated factor 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:P90794]
3. ZK1236.2 cec-1 7673 5.106 0.799 0.953 0.900 0.953 - 0.814 0.687 - Chromo domain-containing protein cec-1 [Source:UniProtKB/Swiss-Prot;Acc:P34618]
4. T04C10.2 epn-1 7689 5.106 0.719 0.912 0.907 0.912 - 0.952 0.704 - EPsiN (endocytic protein) homolog [Source:RefSeq peptide;Acc:NP_510459]
5. C27H6.4 rmd-2 9015 4.916 0.753 0.921 0.802 0.921 - 0.953 0.566 - Regulator of Microtubule Dynamics [Source:RefSeq peptide;Acc:NP_741608]
6. C47B2.6 gale-1 7383 4.816 0.663 0.913 0.877 0.913 - 0.950 0.500 - UDP-GALactose 4-Epimerase [Source:RefSeq peptide;Acc:NP_001021051]
7. H06O01.1 pdi-3 56179 4.67 0.731 0.855 0.748 0.855 - 0.954 0.527 -
8. R04A9.4 ife-2 3282 4.662 0.602 0.895 0.709 0.895 - 0.965 0.596 - Eukaryotic translation initiation factor 4E-2 [Source:UniProtKB/Swiss-Prot;Acc:Q21693]
9. W06H8.1 rme-1 35024 4.587 0.854 0.950 0.794 0.950 - 0.682 0.357 - Receptor Mediated Endocytosis [Source:RefSeq peptide;Acc:NP_001024192]
10. C37A2.5 pqn-21 2461 4.48 0.851 0.952 0.880 0.952 - 0.657 0.188 - Prion-like-(Q/N-rich)-domain-bearing protein [Source:RefSeq peptide;Acc:NP_001293280]
11. C34E11.1 rsd-3 5846 4.433 0.653 0.792 0.701 0.792 - 0.961 0.534 -
12. F09E5.13 agt-2 1697 4.239 0.840 0.950 0.926 0.950 - 0.418 0.155 - AlkylGuanine DNA alkylTransferase [Source:RefSeq peptide;Acc:NP_495008]
13. H13N06.5 hke-4.2 2888 4.191 0.721 0.789 0.475 0.789 - 0.951 0.466 - Histidine-rich membrane protein KE4 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XTQ7]
14. Y39A3CL.5 clp-4 3484 4.009 0.439 0.710 0.451 0.710 - 0.959 0.740 - CaLPain family [Source:RefSeq peptide;Acc:NP_497460]
15. B0563.4 tmbi-4 7067 3.99 0.487 0.732 0.447 0.732 - 0.956 0.636 - Transmembrane BAX inhibitor motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q11080]
16. C27C12.2 egrh-1 2282 3.851 0.712 0.807 0.952 0.807 - 0.573 - - EGR (Early Growth factor Response factor) Homolog [Source:RefSeq peptide;Acc:NP_510462]
17. C18B2.5 C18B2.5 5374 3.737 0.571 0.457 0.658 0.457 - 0.957 0.637 -
18. K10D3.3 taf-11.2 1834 3.685 0.790 0.962 0.948 0.962 - 0.023 - - TAF (TBP-associated transcription factor) family [Source:RefSeq peptide;Acc:NP_492019]
19. C32F10.8 C32F10.8 24073 3.48 0.404 0.849 - 0.849 - 0.951 0.427 -
20. C02F12.4 tag-52 586 3.343 0.603 0.891 0.958 0.891 - - - - Putative protein tag-52 [Source:UniProtKB/Swiss-Prot;Acc:Q11100]
21. R03G5.1 eef-1A.2 15061 3.336 0.465 0.547 0.223 0.547 - 0.953 0.601 - Elongation factor 1-alpha [Source:UniProtKB/Swiss-Prot;Acc:P53013]
22. F22E10.5 cept-1 2898 3.296 0.399 0.535 0.191 0.535 - 0.956 0.680 - Choline/EthanolaminePhosphoTransferase [Source:RefSeq peptide;Acc:NP_001257200]
23. F55D10.2 rpl-25.1 95984 3.292 0.399 0.526 0.286 0.526 - 0.951 0.604 - 60S ribosomal protein L23a 1 [Source:UniProtKB/Swiss-Prot;Acc:P48162]
24. B0416.6 gly-13 1256 3.288 0.628 0.637 0.430 0.637 - 0.956 - - Putative alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q11068]
25. F02A9.2 far-1 119216 3.221 0.389 0.527 0.318 0.527 - 0.952 0.508 - Fatty-acid and retinol-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P34382]
26. F09E10.3 dhs-25 9055 3.194 0.322 0.581 0.224 0.581 - 0.954 0.532 - DeHydrogenases, Short chain [Source:RefSeq peptide;Acc:NP_508282]
27. F07D10.1 rpl-11.2 64869 3.185 0.437 0.497 0.283 0.497 - 0.959 0.512 - Ribosomal Protein, Large subunit [Source:RefSeq peptide;Acc:NP_508413]
28. C03A3.3 C03A3.3 0 3.047 0.725 - 0.704 - - 0.953 0.665 -
29. B0416.7 B0416.7 852 2.985 0.747 - 0.745 - - 0.956 0.537 -
30. K07E3.3 dao-3 964 2.818 - 0.700 - 0.700 - 0.952 0.466 - Dauer or Aging adult Overexpression [Source:RefSeq peptide;Acc:NP_509362]
31. F13E6.2 F13E6.2 0 2.809 0.615 - 0.605 - - 0.951 0.638 -
32. C34F6.2 col-178 152954 2.785 0.324 0.449 0.235 0.449 - 0.956 0.372 - COLlagen [Source:RefSeq peptide;Acc:NP_509869]
33. F34H10.4 F34H10.4 0 2.743 0.657 - 0.479 - - 0.958 0.649 -
34. C34F6.3 col-179 100364 2.687 0.327 0.415 0.277 0.415 - 0.952 0.301 - COLlagen [Source:RefSeq peptide;Acc:NP_509870]
35. T10C6.13 his-2 127 2.612 0.622 0.516 - 0.516 - 0.958 - - Histone H3 [Source:UniProtKB/Swiss-Prot;Acc:P08898]
36. Y111B2A.21 Y111B2A.21 0 2.485 0.609 - 0.332 - - 0.951 0.593 -
37. Y72A10A.1 Y72A10A.1 1863 2.45 0.482 - 0.428 - - 0.952 0.588 -
38. M02F4.9 M02F4.9 0 2.428 0.559 - 0.246 - - 0.959 0.664 -
39. R12H7.5 skr-20 1219 2.273 - 0.412 - 0.412 - 0.957 0.492 - SKp1 Related (ubiquitin ligase complex component) [Source:RefSeq peptide;Acc:NP_510192]
40. C25E10.11 C25E10.11 0 2.267 0.564 - 0.446 - - 0.958 0.299 -
41. Y71F9AR.1 bam-2 2506 2.246 - 0.257 0.227 0.257 - 0.955 0.550 - BAM-2; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5ECL4]
42. F14B8.2 sid-5 1209 2.211 0.635 - - - - 0.969 0.607 - Systemic RNA interference defective protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q19443]
43. W10G6.3 mua-6 8806 2.211 0.158 0.232 0.098 0.232 - 0.953 0.538 - Intermediate filament protein ifa-2 [Source:UniProtKB/Swiss-Prot;Acc:O02365]
44. C09B8.3 C09B8.3 0 2.037 - - 0.543 - - 0.971 0.523 -
45. C35B1.7 C35B1.7 264 1.937 0.299 - 0.153 - - 0.951 0.534 -
46. F44A6.5 F44A6.5 424 1.936 - - 0.302 - - 0.972 0.662 -
47. T07F8.1 T07F8.1 0 1.893 - - 0.333 - - 0.957 0.603 -
48. F54F3.4 dhrs-4 1844 1.733 - - 0.147 - - 0.951 0.635 - Dehydrogenase/reductase SDR family member 4 [Source:UniProtKB/Swiss-Prot;Acc:G5EGA6]
49. C49F8.3 C49F8.3 0 1.516 - - - - - 0.953 0.563 -
50. F08F3.7 cyp-14A5 2751 1.44 - - - - - 0.957 0.483 - CYtochrome P450 family [Source:RefSeq peptide;Acc:NP_504435]
51. T27E4.9 hsp-16.49 18453 1.431 - - - - - 0.953 0.478 - Heat shock protein Hsp-16.48/Hsp-16.49 [Source:UniProtKB/Swiss-Prot;Acc:P02513]
52. R11.2 R11.2 1251 1.34 - - - - - 0.962 0.378 -
53. C54F6.3 C54F6.3 0 1.261 - - - - - 0.959 0.302 -
54. C17B7.11 fbxa-65 0 0.972 - - - - - 0.972 - - F-box A protein [Source:RefSeq peptide;Acc:NP_503929]
55. F36H9.7 F36H9.7 99 0.96 - - - - - 0.960 - -
56. F39H12.2 F39H12.2 0 0.954 - - - - - 0.954 - -
57. F35G12.6 mab-21 0 0.953 - - - - - 0.953 - - Protein male abnormal 21 [Source:UniProtKB/Swiss-Prot;Acc:Q20054]

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Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA