C. elegans Tomo-Seq Search Original sections Merged regions Download

Data search


search
Exact
Search

Experiment male1, section s13.

Sample reads: 192,063. Showing entries 1-100.

No. Gene ID Gene Name Counts CPM Annotation
1. K08D12.6 K08D12.6 1140.00 5935.63
2. F11G11.11 col-20 1060.00 5519.09 COLlagen [Source:RefSeq peptide;Acc:NP_494879]
3. T04C12.6 act-1 1010.00 5258.76 Actin-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DM41]
4. F11C3.3 unc-54 959.00 4993.22 Myosin-4 [Source:UniProtKB/Swiss-Prot;Acc:P02566]
5. T04C12.4 act-3 959.00 4993.22 Actin-1 [Source:UniProtKB/Swiss-Prot;Acc:P0DM41]
6. C06A8.3 C06A8.3 920.00 4790.16
7. F07A5.7 unc-15 920.00 4790.16 Paramyosin [Source:UniProtKB/Swiss-Prot;Acc:P10567]
8. M03F4.2 act-4 885.00 4607.92 Actin-4 [Source:UniProtKB/Swiss-Prot;Acc:P10986]
9. C34F6.2 col-178 855.00 4451.72 COLlagen [Source:RefSeq peptide;Acc:NP_509869]
10. F11H8.3 col-8 855.00 4451.72 Cuticle collagen 8 [Source:UniProtKB/Swiss-Prot;Acc:P18833]
11. F26F12.1 col-140 855.00 4451.72 COLlagen [Source:RefSeq peptide;Acc:NP_504525]
12. T27E9.1 ant-1.1 855.00 4451.72 Adenine Nucleotide Translocator [Source:RefSeq peptide;Acc:NP_001022799]
13. C24F3.6 col-124 782.00 4071.63 COLlagen [Source:RefSeq peptide;Acc:NP_501867]
14. F02A9.3 far-2 782.00 4071.63 Fatty-acid and retinol-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P34383]
15. T05A1.2 col-122 782.00 4071.63 COLlagen [Source:RefSeq peptide;Acc:NP_501700]
16. C36E6.3 mlc-1 743.00 3868.57 Myosin regulatory light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:P19625]
17. F28H1.2 cpn-3 743.00 3868.57 CalPoNin [Source:RefSeq peptide;Acc:NP_491282]
18. K02F2.2 ahcy-1 743.00 3868.57 Adenosylhomocysteinase [Source:UniProtKB/Swiss-Prot;Acc:P27604]
19. F46H5.3 F46H5.3 725.00 3774.85 Probable arginine kinase F46H5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q10454]
20. C53B4.5 col-119 693.00 3608.24 COLlagen [Source:RefSeq peptide;Acc:NP_501561]
21. F57B1.4 col-160 693.00 3608.24 COLlagen [Source:RefSeq peptide;Acc:NP_506284]
22. Y105E8B.1 lev-11 693.00 3608.24 Tropomyosin isoforms a/b/d/f [Source:UniProtKB/Swiss-Prot;Acc:Q22866]
23. W03G11.1 col-181 678.00 3530.14 COLlagen [Source:RefSeq peptide;Acc:NP_001041295]
24. C34F6.3 col-179 664.00 3457.24 COLlagen [Source:RefSeq peptide;Acc:NP_509870]
25. F09F7.2 mlc-3 664.00 3457.24 Myosin, essential light chain [Source:UniProtKB/Swiss-Prot;Acc:P53014]
26. K10B3.9 mai-1 639.00 3327.08 ATPase inhibitor mai-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P37209]
27. Y82E9BR.3 Y82E9BR.3 594.00 3092.77 ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9BKS0]
28. E04A4.7 cyc-2.1 584.00 3040.71 Cytochrome c 2.1 [Source:UniProtKB/Swiss-Prot;Acc:P19974]
29. F13D12.6 F13D12.6 584.00 3040.71 Uncharacterized serine carboxypeptidase F13S12.6 [Source:UniProtKB/Swiss-Prot;Acc:P52715]
30. T25F10.6 clik-1 575.00 2993.85 CaLponIn-liKe proteins [Source:RefSeq peptide;Acc:NP_001024158]
31. T07D10.6 flp-33 565.00 2941.78 FMRF-Like Peptide [Source:RefSeq peptide;Acc:NP_871818]
32. Y77E11A.15 col-106 556.00 2894.92 COLlagen [Source:RefSeq peptide;Acc:NP_741318]
33. F02A9.2 far-1 548.00 2853.27 Fatty-acid and retinol-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P34382]
34. R05G6.7 vdac-1 548.00 2853.27 Probable voltage-dependent anion-selective channel [Source:UniProtKB/Swiss-Prot;Acc:Q21752]
35. C34E10.6 atp-2 516.00 2686.65 ATP synthase subunit beta, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P46561]
36. F08B6.4 unc-87 508.00 2645.00 Unc-87 protein [Source:UniProtKB/TrEMBL;Acc:Q6LD30]
37. F15A2.1 col-184 501.00 2608.55 COLlagen [Source:RefSeq peptide;Acc:NP_001257223]
38. T15B7.3 col-143 501.00 2608.55 COLlagen [Source:RefSeq peptide;Acc:NP_504738]
39. F52E1.7 hsp-17 474.00 2467.97 Heat Shock Protein [Source:RefSeq peptide;Acc:NP_001023957]
40. F52H3.7 lec-2 474.00 2467.97 gaLECtin [Source:RefSeq peptide;Acc:NP_496165]
41. T20G5.2 cts-1 468.00 2436.73 Probable citrate synthase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P34575]
42. Y94H6A.10 Y94H6A.10 462.00 2405.49
43. W07B8.5 cpr-5 456.00 2374.25 Cathepsin B-like cysteine proteinase 5 [Source:UniProtKB/Swiss-Prot;Acc:P43509]
44. Y39B6A.20 asp-1 444.00 2311.77 ASpartyl Protease [Source:RefSeq peptide;Acc:NP_741677]
45. F54E7.2 rps-12 433.00 2254.50 40S ribosomal protein S12 [Source:UniProtKB/Swiss-Prot;Acc:P49196]
46. T21B10.2 enol-1 433.00 2254.50 Enolase [Source:UniProtKB/Swiss-Prot;Acc:Q27527]
47. F54C1.7 pat-10 428.00 2228.46 Paralysed Arrest at Two-fold [Source:RefSeq peptide;Acc:NP_491501]
48. Y75B12B.2 cyn-7 428.00 2228.46 Peptidyl-prolyl cis-trans isomerase 7 [Source:UniProtKB/Swiss-Prot;Acc:P52015]
49. R10E11.8 vha-1 417.00 2171.19 V-type proton ATPase 16 kDa proteolipid subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q21898]
50. C04F12.4 rpl-14 412.00 2145.16 Ribosomal Protein, Large subunit [Source:RefSeq peptide;Acc:NP_492576]
51. ZK1193.1 col-19 412.00 2145.16 Cuticle collagen 19 [Source:UniProtKB/Swiss-Prot;Acc:P18835]
52. F53A9.10 tnt-2 407.00 2119.12 TropoNin T [Source:RefSeq peptide;Acc:NP_001024703]
53. T04C12.5 act-2 407.00 2119.12 Actin-2 [Source:UniProtKB/Swiss-Prot;Acc:P10984]
54. F14F7.1 col-98 402.00 2093.09 COLlagen [Source:RefSeq peptide;Acc:NP_499703]
55. F26D10.3 hsp-1 398.00 2072.26 Heat shock 70 kDa protein A [Source:UniProtKB/Swiss-Prot;Acc:P09446]
56. K09F5.3 spp-14 393.00 2046.23 SaPosin-like Protein family [Source:RefSeq peptide;Acc:NP_001041271]
57. D1007.6 rps-10 388.00 2020.20 Ribosomal Protein, Small subunit [Source:RefSeq peptide;Acc:NP_491398]
58. F42C5.8 rps-8 388.00 2020.20 40S ribosomal protein S8 [Source:UniProtKB/Swiss-Prot;Acc:P48156]
59. F21F8.7 asp-6 384.00 1999.37 Aspartic protease 6 [Source:UniProtKB/Swiss-Prot;Acc:O01530]
60. Y69A2AR.18 Y69A2AR.18 384.00 1999.37
61. F01G4.6 F01G4.6 375.00 1952.51 Phosphate carrier protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P40614]
62. W09C5.6 rpl-31 375.00 1952.51 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:Q9U332]
63. Y5F2A.1 ttr-16 371.00 1931.68 Transthyretin-like protein 16 [Source:UniProtKB/Swiss-Prot;Acc:P55955]
64. F25H2.5 ndk-1 366.00 1905.65 Nucleoside diphosphate kinase [Source:RefSeq peptide;Acc:NP_492761]
65. F52D10.3 ftt-2 366.00 1905.65 14-3-3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q20655]
66. ZK721.2 unc-27 366.00 1905.65 Troponin I 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9GYF1]
67. H28O16.1 H28O16.1 362.00 1884.82 ATP synthase subunit alpha, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XXK1]
68. C18A11.7 dim-1 358.00 1864.00 Disorganized muscle protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q18066]
69. R11A5.4 pck-2 354.00 1843.17 Phosphoenolypyruvate CarboxyKinase [Source:RefSeq peptide;Acc:NP_001021587]
70. RIT1P.688 354.00 1843.17
71. T05D4.1 aldo-1 354.00 1843.17 Fructose-bisphosphate aldolase 1 [Source:UniProtKB/Swiss-Prot;Acc:P54216]
72. F55D10.2 rpl-25.1 350.00 1822.34 60S ribosomal protein L23a 1 [Source:UniProtKB/Swiss-Prot;Acc:P48162]
73. F42F12.7 nspc-14 346.00 1801.52 Nematode Specific Peptide family, group C [Source:RefSeq peptide;Acc:NP_872249]
74. W09C5.8 W09C5.8 346.00 1801.52
75. F13D12.4 alh-8 342.00 1780.69 Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P52713]
76. F21F8.3 asp-5 342.00 1780.69 ASpartyl Protease [Source:RefSeq peptide;Acc:NP_505135]
77. C42C1.14 rpl-34 339.00 1765.07 Ribosomal Protein, Large subunit [Source:RefSeq peptide;Acc:NP_502330]
78. F56E10.4 rps-27 339.00 1765.07 40S ribosomal protein S27 [Source:UniProtKB/Swiss-Prot;Acc:Q9TXP0]
79. Y79H2A.1 brp-1 339.00 1765.07 Bypass of Response to Pheromone in yeast [Source:RefSeq peptide;Acc:NP_001022952]
80. C45B2.1 C45B2.1 335.00 1744.24
81. C47E8.11 C47E8.11 335.00 1744.24
82. F42F12.9 nspc-10 335.00 1744.24 Nematode Specific Peptide family, group C [Source:RefSeq peptide;Acc:NP_872250]
83. K02B2.5 rps-25 335.00 1744.24 40S ribosomal protein S25 [Source:UniProtKB/Swiss-Prot;Acc:P52821]
84. Y119D3B.21 Y119D3B.21 335.00 1744.24
85. F39B2.6 rps-26 331.00 1723.41 40S ribosomal protein S26 [Source:UniProtKB/Swiss-Prot;Acc:O45499]
86. Y49A3A.3 Y49A3A.3 331.00 1723.41
87. F26E4.6 F26E4.6 321.00 1671.35
88. Y38A10A.5 crt-1 321.00 1671.35 Calreticulin [Source:UniProtKB/Swiss-Prot;Acc:P27798]
89. F20H11.3 mdh-2 317.00 1650.52 Probable malate dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O02640]
90. F37C12.4 rpl-36 317.00 1650.52 60S ribosomal protein L36 [Source:UniProtKB/Swiss-Prot;Acc:P49181]
91. F31E3.5 eef-1A.1 314.00 1634.90 Elongation factor 1-alpha [Source:UniProtKB/Swiss-Prot;Acc:P53013]
92. Y71A12B.1 rps-6 314.00 1634.90 40S ribosomal protein S6 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEN6]
93. C14B9.7 rpl-21 307.00 1598.45 60S ribosomal protein L21 [Source:UniProtKB/Swiss-Prot;Acc:P34334]
94. F36A2.6 rps-15 307.00 1598.45 40S ribosomal protein S15 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVP0]
95. F20B6.2 vha-12 304.00 1582.83 Probable V-type proton ATPase subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q19626]
96. T27E4.8 hsp-16.1 304.00 1582.83 Heat shock protein Hsp-16.1/Hsp-16.11 [Source:UniProtKB/Swiss-Prot;Acc:P34696]
97. W05G11.6 pck-1 300.00 1562.01 Phosphoenolypyruvate CarboxyKinase [Source:RefSeq peptide;Acc:NP_497134]
98. C49F5.1 sams-1 297.00 1546.39 Probable S-adenosylmethionine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:O17680]
99. Y19D10A.9 clec-209 297.00 1546.39 C-type LECtin [Source:RefSeq peptide;Acc:NP_503650]
100. K02D7.3 col-101 294.00 1530.77 COLlagen [Source:RefSeq peptide;Acc:NP_499905]
First Previous 1 2 3 Next Last
Ebbing A, Vertesy A, Betist M, Spanjaard B, Junker JP, Berezikov E, van Oudenaarden A, Korswagen HC. Spatially-resolved transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes. Submitted.
Korswagen Lab - 2018 © Hubrecht Institute | Berezikov Lab - 2018 © ERIBA